Effective results for Deinococcus maricopensis DSM 21211 (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 35 proteins (4 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
709986.Deima_1203(PF05922)ER
709986.Deima_2642PF09056ER
709986.Deima_1833(PF04098)(mitochondrial)
709986.Deima_2356(PF07466)ER
709986.Deima_1259(PF07466)ER
709986.Deima_2577(PF05922)ER
709986.Deima_0732(PF13529)ER
709986.Deima_3192(PF05922)ER
709986.Deima_0143(PF13529)ER
709986.Deima_0413(PF10138)(mitochondrial)
709986.Deima_1170(PF10162)ER
709986.Deima_3157PF09056ER
709986.Deima_2286PF09056ER
709986.Deima_2614(PF13529)(mitochondrial)
709986.Deima_2317(PF05922)ER
709986.Deima_2318(PF05922)ER
709986.Deima_2177(PF13668)(ER)
709986.Deima_2176(PF13668)(ER)
709986.Deima_1927(PF13668)(ER)
709986.Deima_2656(PF03449)
709986.Deima_1721(PF03449)
709986.Deima_1863(PF09414)
709986.Deima_2167(PF10138)
709986.Deima_2760(PF01991)
709986.Deima_2496PF08152
709986.Deima_1623(PF13151)
709986.Deima_0576(PF10138)
709986.Deima_2034(PF13668)
709986.Deima_2991(PF00025)
709986.Deima_0351(PF09414)
709986.Deima_2465(PF03449)
709986.Deima_1965(PF03449)
709986.Deima_3228(PF04930)
709986.Deima_3049(PF14328)
709986.Deima_3042(PF13529)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================