Effective results for Nitratifractor salsuginis DSM 16511 (eggnog40)

Summary

Number of putative secreted proteins: 16
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 16 proteins (3 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
749222.Nitsa_1995(PF17101) (PF11380) (PF17102)
749222.Nitsa_1993(PF17101) (PF11380) (PF17102)
749222.Nitsa_1991(PF02516)(ER)
749222.Nitsa_0784PF02037(mitochondrial); mitochondrial
749222.Nitsa_0169(PF06455)ER
749222.Nitsa_0878(PF02943)
749222.Nitsa_0843(PF02689)
749222.Nitsa_1709(PF09458)
749222.Nitsa_1080(PF12513)
749222.Nitsa_0826(PF07998)
749222.Nitsa_1215(PF04930)
749222.Nitsa_0767PF02807
749222.Nitsa_1225(PF01142)
749222.Nitsa_0576(PF16114)
749222.Nitsa_0889(PF01142)
749222.Nitsa_1585PF00627

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================