Effective results for Succinatimonas hippei YIT 12066 (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 35 proteins (0 high, 35 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
762983.HMPREF9444_01344(PF00209)ER
762983.HMPREF9444_02250(PF01000) (PF01193)
762983.HMPREF9444_02077(PF09820) (PF08011)not used
762983.HMPREF9444_02248(PF01000) (PF01193)
762983.HMPREF9444_01345(PF00209)(ER)
762983.HMPREF9444_00369(PF02661)(mitochondrial)
762983.HMPREF9444_01167(PF09820) (PF08011)
762983.HMPREF9444_01768(PF09820) (PF08011)
762983.HMPREF9444_01071(PF09820)(plastid)
762983.HMPREF9444_01130(PF08011)
762983.HMPREF9444_01912(PF02661)
762983.HMPREF9444_01916(PF09820)not used
762983.HMPREF9444_00648(PF02661)
762983.HMPREF9444_00522(PF02661)
762983.HMPREF9444_01343(PF00209)
762983.HMPREF9444_01978(PF09820)
762983.HMPREF9444_01808(PF05932)
762983.HMPREF9444_00617(PF05932)
762983.HMPREF9444_01174(PF02661)
762983.HMPREF9444_00604(PF07720)
762983.HMPREF9444_00361(PF00209)
762983.HMPREF9444_00392(PF02661)
762983.HMPREF9444_01023(PF09820)
762983.HMPREF9444_01024(PF08011)
762983.HMPREF9444_01146(PF02661)
762983.HMPREF9444_02084(PF09820)
762983.HMPREF9444_00546(PF08011)not used
762983.HMPREF9444_00936(PF05932)
762983.HMPREF9444_01183(PF00209)
762983.HMPREF9444_01613(PF09820)
762983.HMPREF9444_00225(PF02661)
762983.HMPREF9444_01072(PF09820)
762983.HMPREF9444_01073(PF08011)
762983.HMPREF9444_02200(PF08011)
762983.HMPREF9444_00066(PF05932)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================