Effective results for Capnocytophaga ochracea F0287 (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 31 proteins (1 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
873517.HMPREF1977_2321(PF13306)ER
873517.HMPREF1977_0162(PF03162)ER
873517.HMPREF1977_0096(PF13583)ER
873517.HMPREF1977_2000(PF01535)ER
873517.HMPREF1977_0939(PF13290)ER
873517.HMPREF1977_0841(PF13290)ER
873517.HMPREF1977_1630(PF03083)ER
873517.HMPREF1977_0910(PF02494)ER
873517.HMPREF1977_2214(PF13306)ER
873517.HMPREF1977_2213(PF02494)ER
873517.HMPREF1977_1052(PF13306)ER
873517.HMPREF1977_2226(PF13290)ER
873517.HMPREF1977_1704(PF13583)ER
873517.HMPREF1977_1712(PF03083)ER; (ER)
873517.HMPREF1977_1274(PF13583)ER
873517.HMPREF1977_1275(PF13583)ER
873517.HMPREF1977_1273(PF13583)ER
873517.HMPREF1977_1133(PF13306)ER
873517.HMPREF1977_1810(PF13306)ER
873517.HMPREF1977_1801(PF13306)ER
873517.HMPREF1977_1807(PF13306)ER
873517.HMPREF1977_0076(PF13306)ER
873517.HMPREF1977_1906(PF13306)ER
873517.HMPREF1977_1344(PF13306)ER
873517.HMPREF1977_0314(PF13306)ER
873517.HMPREF1977_1211(PF14771)
873517.HMPREF1977_0161(PF13306)
873517.HMPREF1977_1679PF03414
873517.HMPREF1977_1808(PF13306)
873517.HMPREF1977_2331(PF02689)
873517.HMPREF1977_2153(PF05693)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================