Effective results for Vibrio anguillarum 775 (eggnog40)
Summary
Number of putative secreted proteins: 551
- Predicted by EffectiveT3: 162 (high confidence), 279 (low confidence)
- Predicted by EffectiveCCBD: 31 within, 25 before, 53 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 26 proteins (1 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
882102.VAA_00832 | + | mitochondrial | |||
882102.VAA_01169 | + | (mitochondrial) | |||
882102.VAA_00041 | (PF06042) | mitochondrial | |||
882102.VAA_03135 | + | (mitochondrial) | |||
882102.VAA_02173 | (<) | ER | |||
882102.VAA_01871 | (PF08180) | ER | |||
882102.VAA_01869 | + | ER | |||
882102.VAA_02256 | (>) | ER | |||
882102.VAA_02797 | (PF13582) | ER | |||
882102.VAA_01998 | + | ER | |||
882102.VAA_03179 | (>) | ER | |||
882102.VAA_02953 | (>) | ER | |||
882102.VAA_02426 | (>) | ER | |||
882102.VAA_00396 | + | mitochondrial | |||
882102.VAA_01042 | (>) | mitochondrial | |||
882102.VAA_01310 | (PF00031) | ER | |||
882102.VAA_01221 | + | ER; (ER) | |||
882102.VAA_03731 | + | ER | |||
882102.VAA_02332 | + | ER | |||
882102.VAA_01565 | + | (ER) | |||
882102.VAA_00405 | + | (ER) | |||
882102.VAA_00193 | PF04927 | (ER) | |||
882102.VAA_01972 | (+) | + | ER | ||
882102.VAA_02860 | + | ER | |||
882102.VAA_02008 | (>) | ER | |||
882102.VAA_02716 | + | mitochondrial | |||
882102.VAA_01013 | + | mitochondrial | |||
882102.VAA_00502 | + | (ER) | |||
882102.VAA_01345 | + | (mitochondrial) | |||
882102.VAA_00180 | (>) | ER | |||
882102.VAA_02276 | (>) | ER | |||
882102.VAA_02873 | (>) | ER | |||
882102.VAA_02494 | + | ER | |||
882102.VAA_02709 | (>) | ER | |||
882102.VAA_01009 | (>) | (mitochondrial) | |||
882102.VAA_00534 | (>) | (mitochondrial) | |||
882102.VAA_01105 | + | ER | |||
882102.VAA_02811 | + | (mitochondrial) | |||
882102.VAA_01425 | (PF10462) | ER; (ER) | |||
882102.VAA_01415 | (>) | ER | |||
882102.VAA_00275 | + | (mitochondrial) | |||
882102.VAA_02520 | + | (mitochondrial) | |||
882102.VAA_00915 | (+) | (mitochondrial); (plastid) | |||
882102.VAA_03337 | (+) | ER | |||
882102.VAA_03648 | (>) | plastid | |||
882102.VAA_02776 | (+) | ER | |||
882102.VAA_04004 | + | (plastid) | |||
882102.VAA_02508 | (+) | mitochondrial; (mitochondrial) | |||
882102.VAA_03209 | (+) | ER | |||
882102.VAA_02382 | (<) | ||||
882102.VAA_01675 | + | ||||
882102.VAA_01520 | (+) | (ER); ER | |||
882102.VAA_03566 | (+) | (mitochondrial) | |||
882102.VAA_03761 | + | (plastid) | |||
882102.VAA_02967 | (+) | mitochondrial; (mitochondrial) | |||
882102.VAA_03311 | + | (plastid) | |||
882102.VAA_03310 | + | (ER) | |||
882102.VAA_02954 | (>) | (ER) | |||
882102.VAA_02157 | (+) | (mitochondrial); plastid | |||
882102.VAA_00943 | (+) | (mitochondrial) | |||
882102.VAA_02303 | + | (>) | |||
882102.VAA_03647 | (+) | (mitochondrial) | |||
882102.VAA_00578 | (+) | mitochondrial | |||
882102.VAA_00971 | + | (plastid) | |||
882102.VAA_00978 | (+) | mitochondrial; (mitochondrial) | |||
882102.VAA_02354 | + | (<) | |||
882102.VAA_03885 | (+) | mitochondrial; (mitochondrial) | |||
882102.VAA_01892 | + | (>) | |||
882102.VAA_03429 | + | plastid | |||
882102.VAA_01812 | + | (plastid) | |||
882102.VAA_01784 | (+) | (PF11523) | (plastid) | ||
882102.VAA_03639 | (+) | (mitochondrial); plastid | |||
882102.VAA_03527 | + | (plastid) | |||
882102.VAA_03520 | + | (plastid) | |||
882102.VAA_02859 | (+) | (mitochondrial); plastid | |||
882102.VAA_02070 | (+) | ER | |||
882102.VAA_01801 | + | (ER) | |||
882102.VAA_02661 | + | (mitochondrial); not used | |||
882102.VAA_01878 | + | (mitochondrial) | |||
882102.VAA_00344 | (+) | (ER); ER | |||
882102.VAA_00232 | (>) | plastid | |||
882102.VAA_03470 | (+) | (mitochondrial); plastid | |||
882102.VAA_04238 | (<) | ER; not used | |||
882102.VAA_01358 | + | (ER) | |||
882102.VAA_00537 | (+) | ER | |||
882102.VAA_00241 | + | (>) | |||
882102.VAA_02366 | (+) | ER | |||
882102.VAA_03511 | + | plastid | |||
882102.VAA_03469 | + | (plastid) | |||
882102.VAA_01100 | (+) | ER | |||
882102.VAA_03078 | (+) | (mitochondrial) | |||
882102.VAA_03670 | + | (mitochondrial) | |||
882102.VAA_01735 | (+) | (ER) | |||
882102.VAA_01424 | (+) | ER | |||
882102.VAA_01126 | + | ||||
882102.VAA_00654 | (+) | (mitochondrial) | |||
882102.VAA_01385 | (+) | ER | |||
882102.VAA_01416 | + | ||||
882102.VAA_03725 | + | ||||
882102.VAA_03125 | + | ||||
882102.VAA_03126 | + | ||||
882102.VAA_03651 | + | ||||
882102.VAA_01247 | (<) | ||||
882102.VAA_01402 | + | ||||
882102.VAA_00732 | + | ||||
882102.VAA_00288 | + | ||||
882102.VAA_00910 | + | not used | |||
882102.VAA_03005 | + | ||||
882102.VAA_03004 | + | ||||
882102.VAA_02600 | + | ||||
882102.VAA_02604 | + | ||||
882102.VAA_02191 | (+) | plastid | |||
882102.VAA_02195 | + | ||||
882102.VAA_03919 | (PF03050) | ||||
882102.VAA_01890 | (+) | (mitochondrial) | |||
882102.VAA_01275 | (+) | (ER) | |||
882102.VAA_01657 | + | ||||
882102.VAA_00709 | (+) | (ER) | |||
882102.VAA_01503 | + | ||||
882102.VAA_00299 | + | ||||
882102.VAA_00298 | + | ||||
882102.VAA_00293 | + | ||||
882102.VAA_00902 | (>) | ||||
882102.VAA_00905 | (+) | (ER) | |||
882102.VAA_02610 | + | ||||
882102.VAA_03967 | (PF03050) | ||||
882102.VAA_02502 | + | ||||
882102.VAA_02766 | (>) | ||||
882102.VAA_01465 | + | ||||
882102.VAA_00600 | (>) | ||||
882102.VAA_01515 | + | ||||
882102.VAA_00930 | + | ||||
882102.VAA_00333 | + | ||||
882102.VAA_01365 | + | ||||
882102.VAA_01713 | + | ||||
882102.VAA_03596 | + | ||||
882102.VAA_03593 | + | ||||
882102.VAA_03592 | (>) | ||||
882102.VAA_00751 | (+) | (mitochondrial) | |||
882102.VAA_03753 | (+) | (mitochondrial) | |||
882102.VAA_02409 | (<) | not used | |||
882102.VAA_02407 | (+) | (>) | |||
882102.VAA_02081 | (+) | (mitochondrial) | |||
882102.VAA_01985 | (+) | + | |||
882102.VAA_01980 | + | ||||
882102.VAA_00724 | + | ||||
882102.VAA_02451 | + | ||||
882102.VAA_02885 | + | ||||
882102.VAA_01188 | + | ||||
882102.VAA_01693 | + | ||||
882102.VAA_01695 | (+) | + | |||
882102.VAA_01699 | (>) | ||||
882102.VAA_01325 | + | ||||
882102.VAA_00584 | + | ||||
882102.VAA_04065 | (PF03050) | ||||
882102.VAA_04060 | (PF03050) | ||||
882102.VAA_00921 | + | ||||
882102.VAA_03306 | (>) | ||||
882102.VAA_03785 | + | ||||
882102.VAA_03054 | + | ||||
882102.VAA_02960 | + | ||||
882102.VAA_03949 | (PF03050) | ||||
882102.VAA_02416 | (+) | (plastid) | |||
882102.VAA_02568 | + | ||||
882102.VAA_02095 | + | ||||
882102.VAA_02090 | (+) | (<) | |||
882102.VAA_02893 | + | ||||
882102.VAA_04320 | (PF03050) | ||||
882102.VAA_01689 | + | ||||
882102.VAA_04257 | (PF03050) | ||||
882102.VAA_01445 | + | ||||
882102.VAA_03273 | (+) | (mitochondrial) | |||
882102.VAA_04071 | (PF03050) | ||||
882102.VAA_00559 | + | ||||
882102.VAA_03877 | + | ||||
882102.VAA_03777 | (>) | ||||
882102.VAA_02316 | (>) | ||||
882102.VAA_02312 | (>) | ||||
882102.VAA_03957 | + | ||||
882102.VAA_04315 | + | ||||
882102.VAA_03479 | + | ||||
882102.VAA_00949 | (+) | (PF05706) | |||
882102.VAA_01875 | + | ||||
882102.VAA_00394 | + | not used | |||
882102.VAA_00120 | + | ||||
882102.VAA_03094 | (PF08732) | ||||
882102.VAA_01383 | + | ||||
882102.VAA_02308 | + | ||||
882102.VAA_02124 | + | ||||
882102.VAA_03891 | (PF03050) | ||||
882102.VAA_02237 | + | ||||
882102.VAA_03636 | + | ||||
882102.VAA_02435 | (+) | (ER) | |||
882102.VAA_02348 | + | ||||
882102.VAA_04307 | (+) | (>) | |||
882102.VAA_01829 | + | ||||
882102.VAA_00803 | (<) | ||||
882102.VAA_01316 | + | ||||
882102.VAA_01557 | + | ||||
882102.VAA_04051 | (PF03050) | ||||
882102.VAA_00570 | + | ||||
882102.VAA_01757 | + | ||||
882102.VAA_04454 | (>) | ||||
882102.VAA_00207 | + | ||||
882102.VAA_03456 | + | ||||
882102.VAA_03088 | (+) | + | |||
882102.VAA_03086 | + | ||||
882102.VAA_03550 | + | ||||
882102.VAA_02331 | + | ||||
882102.VAA_02835 | + | ||||
882102.VAA_03426 | (+) | (>) | |||
882102.VAA_01324 | (+) | (mitochondrial) | |||
882102.VAA_01147 | (+) | (ER) | |||
882102.VAA_01810 | (>) | ||||
882102.VAA_00787 | (+) | (ER) | |||
882102.VAA_01962 | (>) | ||||
882102.VAA_01963 | + | ||||
882102.VAA_00565 | + | ||||
882102.VAA_00142 | (+) | + | |||
882102.VAA_00960 | (<) | ||||
882102.VAA_00367 | (PF00303) | ||||
882102.VAA_00363 | (<) | ||||
882102.VAA_03525 | (>) | ||||
882102.VAA_03522 | (+) | plastid | |||
882102.VAA_02212 | (>) | ||||
882102.VAA_02215 | (+) | (>) | |||
882102.VAA_02079 | (>) | ||||
882102.VAA_01360 | + | ||||
882102.VAA_02072 | + | ||||
882102.VAA_02456 | (+) | (plastid) | |||
882102.VAA_01021 | (+) | (>) | |||
882102.VAA_01371 | + | ||||
882102.VAA_00175 | (>) | ||||
882102.VAA_00999 | + | ||||
882102.VAA_00994 | + | ||||
882102.VAA_00995 | (<) | ||||
882102.VAA_00353 | (+) | (mitochondrial) | |||
882102.VAA_00226 | (PF06042) | ||||
882102.VAA_00228 | (PF07653) | ||||
882102.VAA_00004 | (+) | (mitochondrial) | |||
882102.VAA_03433 | + | ||||
882102.VAA_03629 | (>) | ||||
882102.VAA_03623 | + | ||||
882102.VAA_03533 | + | ||||
882102.VAA_03326 | (>) | ||||
882102.VAA_02267 | (+) | (mitochondrial) | |||
882102.VAA_02230 | (+) | (plastid) | |||
882102.VAA_02540 | + | ||||
882102.VAA_02467 | + | ||||
882102.VAA_02710 | + | ||||
882102.VAA_02714 | + | ||||
882102.VAA_00519 | (>) | ||||
882102.VAA_01904 | (>) | ||||
882102.VAA_00697 | + | ||||
882102.VAA_01589 | + | ||||
882102.VAA_01583 | (>) | ||||
882102.VAA_01342 | + | ||||
882102.VAA_00183 | + | ||||
882102.VAA_00434 | + | ||||
882102.VAA_03613 | (>) | ||||
882102.VAA_03042 | + | ||||
882102.VAA_02906 | + | ||||
882102.VAA_00456 | + | ||||
882102.VAA_02876 | + | ||||
882102.VAA_02017 | + | ||||
882102.VAA_00451 | + | ||||
882102.VAA_02011 | + | ||||
882102.VAA_00450 | + | ||||
882102.VAA_02499 | + | ||||
882102.VAA_02705 | + | ||||
882102.VAA_01007 | + | ||||
882102.VAA_02144 | + | not used | |||
882102.VAA_04234 | + | ||||
882102.VAA_01826 | (>) | ||||
882102.VAA_01756 | + | ||||
882102.VAA_00404 | (PF00303) | ||||
882102.VAA_00403 | (PF00303) | ||||
882102.VAA_00536 | + | ||||
882102.VAA_00242 | + | ||||
882102.VAA_02249 | + | ||||
882102.VAA_02243 | (<) | ||||
882102.VAA_02969 | (<) | ||||
882102.VAA_03517 | + | ||||
882102.VAA_03280 | (+) | plastid | |||
882102.VAA_02646 | (<) | ||||
882102.VAA_03946 | (PF03050) | ||||
882102.VAA_02801 | (<) | ||||
882102.VAA_02802 | + | ||||
882102.VAA_03465 | (<) | ||||
882102.VAA_03467 | + | ||||
882102.VAA_02809 | + | ||||
882102.VAA_03466 | + | ||||
882102.VAA_02738 | + | ||||
882102.VAA_01929 | + | ||||
882102.VAA_01299 | + | ||||
882102.VAA_00747 | (<) | ||||
882102.VAA_00866 | + | ||||
882102.VAA_00410 | (<) | ||||
882102.VAA_1856 | + | ||||
882102.VAA_01322 | + | ||||
882102.VAA_03076 | + | ||||
882102.VAA_03257 | + | ||||
882102.VAA_03385 | (<) | ||||
882102.VAA_02253 | (<) | ||||
882102.VAA_02652 | + | ||||
882102.VAA_02031 | + | ||||
882102.VAA_02038 | + | ||||
882102.VAA_01606 | (+) | (<) | |||
882102.VAA_01118 | (<) | ||||
882102.VAA_00640 | + | ||||
882102.VAA_00645 | + | ||||
882102.VAA_01933 | (<) | ||||
882102.VAA_01427 | + | ||||
882102.VAA_01429 | + | ||||
882102.VAA_00460 | + | ||||
882102.VAA_00067 | + | not used | |||
882102.VAA_01294 | + | ||||
882102.VAA_02617 | + | ||||
882102.VAA_02346 | (+) | (plastid) | |||
882102.VAA_03063 | (+) | (>) | |||
882102.VAA_01444 | + | ||||
882102.VAA_01337 | + | ||||
882102.VAA_03399 | (+) | (<) | |||
882102.VAA_03480 | + | ||||
882102.VAA_03513 | + | ||||
882102.VAA_03512 | + | ||||
882102.VAA_00658 | (<) | ||||
882102.VAA_01705 | + | ||||
882102.VAA_00657 | + | not used | |||
882102.VAA_00897 | (+) | (ER) | |||
882102.VAA_00896 | + | ||||
882102.VAA_00899 | + | not used | |||
882102.VAA_00077 | + | ||||
882102.VAA_00271 | + | ||||
882102.VAA_00389 | + | ||||
882102.VAA_00001 | + | ||||
882102.VAA_01250 | + | ||||
882102.VAA_03011 | (PF03050) | ||||
882102.VAA_01168 | (+) | ||||
882102.VAA_03726 | (+) | ||||
882102.VAA_03721 | (+) | ||||
882102.VAA_03658 | (+) | ||||
882102.VAA_0096 | (+) | ||||
882102.VAA_01828 | (+) | ||||
882102.VAA_00666 | (+) | ||||
882102.VAA_01621 | (+) | ||||
882102.VAA_01401 | (+) | ||||
882102.VAA_04291 | (+) | ||||
882102.VAA_02823 | (+) | ||||
882102.VAA_02839 | (+) | ||||
882102.VAA_02292 | (+) | ||||
882102.VAA_03009 | (+) | ||||
882102.VAA_03227 | (+) | ||||
882102.VAA_03646 | (+) | ||||
882102.VAA_02518 | (+) | ||||
882102.VAA_02606 | (+) | ||||
882102.VAA_02199 | (+) | ||||
882102.VAA_02190 | (+) | ||||
882102.VAA_02770 | (+) | ||||
882102.VAA_00507 | (+) | ||||
882102.VAA_00291 | (+) | ||||
882102.VAA_00290 | (+) | ||||
882102.VAA_04019 | (+) | not used | |||
882102.VAA_04087 | (+) | ||||
882102.VAA_04085 | (+) | ||||
882102.VAA_03038 | (+) | ||||
882102.VAA_03037 | (+) | ||||
882102.VAA_03107 | (+) | ||||
882102.VAA_02613 | (+) | ||||
882102.VAA_02184 | (+) | ||||
882102.VAA_02982 | (+) | ||||
882102.VAA_02166 | (+) | ||||
882102.VAA_02165 | (+) | ||||
882102.VAA_02386 | (+) | ||||
882102.VAA_00846 | (+) | ||||
882102.VAA_01868 | (+) | ||||
882102.VAA_00609 | (+) | ||||
882102.VAA_00590 | (+) | ||||
882102.VAA_00754 | (+) | ||||
882102.VAA_03023 | (+) | ||||
882102.VAA_03110 | (+) | ||||
882102.VAA_02420 | (+) | ||||
882102.VAA_02155 | (+) | ||||
882102.VAA_02086 | (+) | ||||
882102.VAA_01072 | (+) | ||||
882102.VAA_02889 | (+) | ||||
882102.VAA_02886 | (+) | ||||
882102.VAA_01187 | (+) | ||||
882102.VAA_01850 | (+) | ||||
882102.VAA_01452 | (+) | ||||
882102.VAA_00613 | (+) | ||||
882102.VAA_04068 | (+) | ||||
882102.VAA_04069 | (+) | ||||
882102.VAA_00326 | (+) | ||||
882102.VAA_00329 | (+) | ||||
882102.VAA_02666 | (+) | ||||
882102.VAA_00729 | (+) | ||||
882102.VAA_02363 | (+) | ||||
882102.VAA_00705 | (+) | ||||
882102.VAA_02890 | (+) | ||||
882102.VAA_00730 | (+) | not used | |||
882102.VAA_00827 | (+) | ||||
882102.VAA_04255 | (+) | ||||
882102.VAA_00622 | (+) | ||||
882102.VAA_00481 | (+) | ||||
882102.VAA_03200 | (+) | ||||
882102.VAA_03573 | (+) | ||||
882102.VAA_03792 | (+) | ||||
882102.VAA_03951 | (+) | ||||
882102.VAA_03952 | (+) | ||||
882102.VAA_03958 | (+) | not used | |||
882102.VAA_01949 | (+) | ||||
882102.VAA_04318 | (+) | not used | |||
882102.VAA_04312 | (+) | ||||
882102.VAA_00635 | (+) | ||||
882102.VAA_01535 | (+) | ||||
882102.VAA_00540 | (+) | ||||
882102.VAA_01874 | (+) | ||||
882102.VAA_00303 | (+) | ||||
882102.VAA_00307 | (+) | ||||
882102.VAA_02700 | (+) | ||||
882102.VAA_00945 | (+) | ||||
882102.VAA_03091 | (+) | ||||
882102.VAA_02549 | (+) | ||||
882102.VAA_02232 | (+) | ||||
882102.VAA_01068 | (+) | ||||
882102.VAA_02056 | (+) | ||||
882102.VAA_03645 | (+) | ||||
882102.VAA_04309 | (+) | ||||
882102.VAA_04304 | (+) | ||||
882102.VAA_01044 | (+) | ||||
882102.VAA_01951 | (+) | ||||
882102.VAA_01958 | (+) | ||||
882102.VAA_03458 | + | ||||
882102.VAA_01553 | (+) | ||||
882102.VAA_03451 | (+) | ||||
882102.VAA_03452 | (+) | not used | |||
882102.VAA_03085 | (+) | ||||
882102.VAA_02333 | (+) | ||||
882102.VAA_02684 | (+) | ||||
882102.VAA_02206 | (+) | ||||
882102.VAA_02593 | (+) | ||||
882102.VAA_02062 | (+) | ||||
882102.VAA_02444 | (+) | ||||
882102.VAA_02851 | (+) | ||||
882102.VAA_01891 | (+) | ||||
882102.VAA_01141 | (+) | ||||
882102.VAA_01146 | (+) | ||||
882102.VAA_0067 | (+) | ||||
882102.VAA_00814 | (+) | ||||
882102.VAA_01496 | (+) | ||||
882102.VAA_01966 | (+) | ||||
882102.VAA_01960 | (+) | ||||
882102.VAA_01764 | (+) | ||||
882102.VAA_00567 | (+) | ||||
882102.VAA_04194 | (+) | ||||
882102.VAA_00141 | + | ||||
882102.VAA_04062 | (+) | ||||
882102.VAA_00964 | (+) | ||||
882102.VAA_00966 | (+) | ||||
882102.VAA_01522 | (+) | ||||
882102.VAA_02904 | (+) | ||||
882102.VAA_00210 | (+) | ||||
882102.VAA_03521 | (+) | ||||
882102.VAA_02326 | (+) | ||||
882102.VAA_02695 | (+) | ||||
882102.VAA_02219 | (+) | ||||
882102.VAA_02076 | (+) | ||||
882102.VAA_02459 | (+) | ||||
882102.VAA_00512 | (+) | ||||
882102.VAA_01480 | (+) | ||||
882102.VAA_00424 | (+) | ||||
882102.VAA_00770 | (+) | ||||
882102.VAA_01651 | (+) | ||||
882102.VAA_02460 | (+) | ||||
882102.VAA_02712 | (+) | ||||
882102.VAA_02713 | (+) | ||||
882102.VAA_01012 | (+) | ||||
882102.VAA_01016 | (+) | ||||
882102.VAA_03191 | (+) | ||||
882102.VAA_00764 | (+) | ||||
882102.VAA_01340 | (+) | ||||
882102.VAA_00438 | (+) | ||||
882102.VAA_00050 | (+) | ||||
882102.VAA_02350 | (+) | ||||
882102.VAA_03047 | (+) | ||||
882102.VAA_03270 | (+) | ||||
882102.VAA_03474 | (+) | ||||
882102.VAA_01758 | (+) | ||||
882102.VAA_01598 | (+) | ||||
882102.VAA_02390 | (+) | ||||
882102.VAA_01359 | (+) | ||||
882102.VAA_01319 | (+) | ||||
882102.VAA_03419 | (+) | ||||
882102.VAA_01279 | (+) | ||||
882102.VAA_03262 | (+) | ||||
882102.VAA_02649 | (+) | ||||
882102.VAA_02246 | (+) | not used | |||
882102.VAA_03945 | (+) | ||||
882102.VAA_03461 | (+) | ||||
882102.VAA_02020 | (+) | ||||
882102.VAA_02025 | (+) | ||||
882102.VAA_01614 | (+) | ||||
882102.VAA_01729 | (+) | ||||
882102.VAA_01430 | (+) | ||||
882102.VAA_04053 | (+) | ||||
882102.VAA_01436 | (+) | ||||
882102.VAA_00867 | (+) | ||||
882102.VAA_00529 | (+) | ||||
882102.VAA_04211 | (+) | not used | |||
882102.VAA_02867 | (+) | ||||
882102.VAA_00258 | (+) | ||||
882102.VAA_03989 | (+) | not used | |||
882102.VAA_03071 | (+) | ||||
882102.VAA_04063 | (+) | ||||
882102.VAA_03622 | (+) | ||||
882102.VAA_03679 | (+) | ||||
882102.VAA_02816 | (+) | ||||
882102.VAA_02818 | (+) | ||||
882102.VAA_02650 | (+) | ||||
882102.VAA_02657 | (+) | ||||
882102.VAA_02033 | (+) | ||||
882102.VAA_01935 | (+) | ||||
882102.VAA_04321 | (+) | ||||
882102.VAA_01420 | (+) | ||||
882102.VAA_01428 | (+) | ||||
882102.VAA_00064 | (+) | ||||
882102.VAA_01924 | (+) | ||||
882102.VAA_03745 | (+) | ||||
882102.VAA_03746 | (+) | ||||
882102.VAA_04258 | (+) | not used | |||
882102.VAA_01792 | (+) | ||||
882102.VAA_00882 | (+) | ||||
882102.VAA_01333 | (+) | ||||
882102.VAA_02820 | (+) | ||||
882102.VAA_02625 | (+) | ||||
882102.VAA_03965 | (+) | ||||
882102.VAA_03961 | (+) | ||||
882102.VAA_01497 | (+) | ||||
882102.VAA_00627 | (+) | ||||
882102.VAA_01638 | (+) | ||||
882102.VAA_01706 | (+) | ||||
882102.VAA_01256 | (+) | ||||
882102.VAA_00655 | (+) | ||||
882102.VAA_03998 | (+) | not used | |||
882102.VAA_01417 | (+) | ||||
882102.VAA_01533 | (+) | ||||
882102.VAA_04282 | (+) | ||||
882102.VAA_00272 | (+) | ||||
882102.VAA_00005 | (+) | ||||
882102.VAA_00955 | (+) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
- EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
- EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: YES (FDR = 12.5 %)
Estimated copy number = 0.5 (5/10 KEGG proteins)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.75 (14/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.5 (5/10 KEGG proteins)
Estimated copy number = 1.75 (14/8 KEGG proteins)