Effective results for Lactobacillus acidophilus 30SC (eggnog40)

Summary

Number of putative secreted proteins: 48
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 48 proteins (2 high, 46 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
891391.LAC30SC_10005(PF03577)(mitochondrial)
891391.LAC30SC_02600(PF06280)(mitochondrial)
891391.LAC30SC_00670(PF05014)
891391.LAC30SC_08850(PF05014)
891391.LAC30SC_00920(PF13936)
891391.LAC30SC_09250(PF13936)
891391.LAC30SC_07625(PF02371)
891391.LAC30SC_00930(PF03051)
891391.LAC30SC_02500(PF02371)
891391.LAC30SC_00125(PF03577)
891391.LAC30SC_05290(PF13936)
891391.LAC30SC_05270(PF02371)
891391.LAC30SC_00130(PF02371)
891391.LAC30SC_01350PF00910
891391.LAC30SC_01175(PF02371)
891391.LAC30SC_01610PF00910
891391.LAC30SC_08930(PF03577)
891391.LAC30SC_03480(PF13936)
891391.LAC30SC_02835(PF06100)
891391.LAC30SC_10085(PF13936)
891391.LAC30SC_00300(PF01501)
891391.LAC30SC_00305(PF01501)
891391.LAC30SC_02045(PF06280)
891391.LAC30SC_05230(PF13936)
891391.LAC30SC_07265(PF03577)
891391.LAC30SC_00570(PF02371)
891391.LAC30SC_01130(PF03577)
891391.LAC30SC_00795(PF02371)
891391.LAC30SC_07875(PF02371)
891391.LAC30SC_03510(PF02371)
891391.LAC30SC_09155(PF13936)
891391.LAC30SC_05595(PF02371)
891391.LAC30SC_08155(PF06838)
891391.LAC30SC_03505(PF02371)
891391.LAC30SC_05340(PF13936)
891391.LAC30SC_01695(PF03051)
891391.LAC30SC_00985(PF03051)
891391.LAC30SC_05410(PF02371)
891391.LAC30SC_02170(PF02371)
891391.LAC30SC_02355(PF02371)
891391.LAC30SC_04565(PF03051)
891391.LAC30SC_07880(PF05014)
891391.LAC30SC_05025(PF06838)
891391.LAC30SC_10640(PF02371)
891391.LAC30SC_00295(PF01501)
891391.LAC30SC_04140(PF13936)
891391.LAC30SC_03260(PF06100)
891391.LAC30SC_01240(PF02371)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================