Effective results for Sulfuricurvum kujiense DSM 16994 (refseq)

Summary

Number of putative secreted proteins: 112
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 112 proteins (2 high, 110 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
WP_013459276.1(PF00990)ER
WP_013461285.1(PF00990)ER
WP_013459573.1(PF00990)(mitochondrial)
WP_013459336.1(PF00990)(ER)
WP_013459696.1(PF00990)(mitochondrial)
WP_013460515.1(PF00990)(ER)
WP_013460600.1(PF00990)(ER)
WP_013461270.1(PF02516)(ER)
WP_041666731.1(PF13237)mitochondrial
WP_013460365.1(PF00990)ER
WP_013460353.1(PF00990)ER; (ER)
WP_049766972.1(PF00990)ER
WP_013459522.1(PF00990)ER
WP_013460148.1(PF00990)ER
WP_013461322.1(PF13237)mitochondrial
WP_013449879.1(PF13237)mitochondrial
WP_013459263.1(PF00990)ER
WP_013460333.1(PF00990)ER
WP_013459511.1(PF00990)ER
WP_013459961.1(PF00990)ER
WP_013458986.1(PF00990)ER
WP_013460341.1(PF00990)ER
WP_013461122.1(PF00990)ER
WP_013458957.1(PF00990)ER
WP_013460516.1(PF00990)ER
WP_013461308.1(PF00990)ER
WP_013460360.1(PF00990)ER
WP_013459521.1(PF00990)ER
WP_013461055.1(PF00990)ER
WP_013460927.1(PF00990)ER
WP_013459083.1(PF00990)ER
WP_013459909.1(PF00990)ER
WP_013459788.1(PF00990)ER
WP_013460477.1(PF00990)ER
WP_013459510.1(PF00990)ER
WP_013460150.1(PF00990)mitochondrial
WP_013459568.1(PF00990)ER
WP_013460364.1(PF00990)ER
WP_013459545.1(PF00990)ER
WP_013460054.1(PF00990)(ER)
WP_013460402.1(PF00990)(ER)
WP_013461327.1(PF13237)(mitochondrial)
WP_013459699.1(PF00990)plastid
WP_049766971.1(PF00990)
WP_013460745.1(PF07693)
WP_013460184.1(PF00990)
WP_013460494.1(PF00990)
WP_013460496.1(PF00990)
WP_041666867.1(PF03054)
WP_013460050.1(PF03588)
WP_013449855.1(PF07693)
WP_013461383.1(PF00990)
WP_013460169.1(PF00990)
WP_013460167.1(PF00990)
WP_013460179.1(PF01871)
WP_013460181.1(PF00990)
WP_013449990.1(PF00990)
WP_013460521.1(PF00990)
WP_013460836.1(PF00990)
WP_049766998.1(PF00990)
WP_013459134.1(PF13237)
WP_013460672.1PF08312
WP_013460223.1(PF00990)
WP_013461307.1(PF00990)
WP_013459593.1(PF02943)
WP_013460490.1(PF00990)
WP_013450038.1(PF04218)
WP_013459817.1(PF00990)
WP_041667062.1(PF00990)
WP_013459219.1(PF00990)
WP_013460551.1(PF07693)
WP_013459423.1(PF00990)
WP_013460487.1(PF00990)
WP_013459045.1(PF01871)
WP_013460878.1(PF00990)
WP_049766986.1(PF00990)
WP_013459122.1(PF07693)
WP_041666744.1(PF01106)
WP_013461377.1(PF01106)
WP_013460637.1(PF00990)
WP_013460835.1(PF00990)
WP_013460134.1(PF00162)
WP_013458945.1(PF03054)
WP_049767009.1(PF11074)
WP_013459195.1(PF03054)
WP_013460381.1(PF00990)
WP_013450006.1(PF03588)
WP_013461306.1(PF00990)
WP_049766968.1(PF00990)
WP_013461148.1(PF01106)
WP_013459152.1(PF00162)
WP_013460311.1(PF00990)
WP_013460370.1(PF00990)
WP_013460530.1(PF00990)
WP_013459525.1(PF00990)
WP_013460027.1(PF00990)
WP_013459810.1(PF00990)
WP_013459258.1(PF00990)
WP_013460484.1(PF00990)
WP_041667299.1(PF00990)
WP_013460819.1(PF00990)
WP_013449986.1(PF00990)
WP_013460393.1(PF01106)
WP_013459540.1(PF00990)
WP_013459384.1(PF00990)
WP_013460354.1(PF00990)
WP_013460787.1(PF03588)
WP_013458930.1(PF12513)
WP_013459529.1(PF16114)
WP_013460664.1PF04981
WP_013458869.1(PF00990)
WP_049766961.1(PF00990)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================