197221.tlr2399 PF12323 Helix-turn-helix domain 14 197221.tlr2399 PF07282 Putative transposase DNA-binding domain 6 197221.tlr1127 PF12323 Helix-turn-helix domain 14 197221.tlr1127 PF07282 Putative transposase DNA-binding domain 6 197221.tlr1128 PF00498 FHA domain 5 197221.tlr1380 PF12323 Helix-turn-helix domain 14 197221.tlr1380 PF07282 Putative transposase DNA-binding domain 6 197221.tlr0725 PF00498 FHA domain 5 197221.tlr1630 PF00124 Photosynthetic reaction centre protein 7 197221.tsl1567 PF02427 Photosystem I reaction centre subunit IV / PsaE 6 197221.tlr1253 PF00498 FHA domain 5 197221.tlr0472 PF11210 Protein of unknown function (DUF2996) 6 197221.tll1109 PF11317 Protein of unknown function (DUF3119) 6 197221.tll0168 PF00498 FHA domain 5 197221.tll1488 PF00498 FHA domain 5 197221.tll0507 PF04455 LOR/SDH bifunctional enzyme conserved region 6 197221.tll1562 PF01947 Protein of unknown function (DUF98) 5 197221.tlr2032 PF12323 Helix-turn-helix domain 14 197221.tlr2032 PF07282 Putative transposase DNA-binding domain 6 197221.tll2024 PF05542 Protein of unknown function (DUF760) 7 197221.tll2028 PF04278 Tic22-like family 6 197221.tlr1130 PF11909 NADH-quinone oxidoreductase cyanobacterial subunit N 6 197221.tsl0176 PF02533 Photosystem II 4 kDa reaction centre component 7 197221.tlr1134 PF11264 Thylakoid formation protein 6 197221.tlr1249 PF04481 Protein of unknown function (DUF561) 6 197221.tsr1483 PF05421 Protein of unknown function (DUF751) 6 197221.tll1374 PF12323 Helix-turn-helix domain 14 197221.tll1374 PF07282 Putative transposase DNA-binding domain 6 197221.tll0155 PF07282 Putative transposase DNA-binding domain 6 197221.tll0156 PF12323 Helix-turn-helix domain 14 197221.tsr1755 PF00504 Chlorophyll A-B binding protein 4 197221.tsl2208 PF00504 Chlorophyll A-B binding protein 4 197221.tll0792 PF11016 Protein of unknown function (DUF2854) 6 197221.tsr1074 PF02532 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) 9 197221.tsr0706 PF10716 NADH dehydrogenase transmembrane subunit 7 197221.tll2329 PF03652 Holliday junction resolvase 4 197221.tsl1837 PF11998 Protein of unknown function (DUF3493) 7 197221.tlr0707 PF11460 Protein of unknown function (DUF3007) 6 197221.tlr1477 PF00124 Photosynthetic reaction centre protein 7 197221.tlr0672 PF11805 Protein of unknown function (DUF3326) 6 197221.tll1410 PF12095 Protein of unknown function (DUF3571) 6 197221.tsl0836 PF06298 Photosystem II protein Y (PsbY) 6 197221.tll1162 PF12323 Helix-turn-helix domain 14 197221.tll1162 PF07282 Putative transposase DNA-binding domain 6 197221.tlr0455 PF00124 Photosynthetic reaction centre protein 7 197221.tsl2479 PF03742 PetN 10 197221.tsl2052 PF05151 Photosystem II reaction centre M protein (PsbM) 8 197221.tll1942 PF13225 Domain of unknown function (DUF4033) 23 197221.tll0964 PF12323 Helix-turn-helix domain 14 197221.tll0964 PF07282 Putative transposase DNA-binding domain 6 197221.tsr0446 PF00504 Chlorophyll A-B binding protein 4 197221.tlr0651 PF03652 Holliday junction resolvase 4 197221.tll2004 PF12323 Helix-turn-helix domain 14 197221.tll2004 PF07282 Putative transposase DNA-binding domain 6 197221.tlr0372 PF07444 Ycf66 protein N-terminus 6 197221.tsr1531 PF01405 Photosystem II reaction centre T protein 8 197221.tll0315 PF11360 Protein of unknown function (DUF3110) 6 197221.tll0958 PF11267 Domain of unknown function (DUF3067) 6 197221.tll0222 PF12323 Helix-turn-helix domain 14 197221.tll0222 PF07282 Putative transposase DNA-binding domain 6 197221.tll1537 PF00498 FHA domain 5 197221.tlr2199 PF12323 Helix-turn-helix domain 14 197221.tlr2199 PF07282 Putative transposase DNA-binding domain 6 197221.tll0660 PF12483 E3 Ubiquitin ligase 11 197221.tsr1387 PF02468 Photosystem II reaction centre N protein (psbN) 6 197221.tlr2179 PF12323 Helix-turn-helix domain 14 197221.tlr2179 PF07282 Putative transposase DNA-binding domain 6 197221.tlr2175 PF04423 Rad50 zinc hook motif 8 197221.tlr1075 PF12600 Protein of unknown function (DUF3769) 6 197221.tlr1073 PF16166 Chloroplast import apparatus Tic20-like 6 197221.tlr0273 PF12323 Helix-turn-helix domain 14 197221.tlr0273 PF07282 Putative transposase DNA-binding domain 6 197221.tsr0877 PF02529 Cytochrome B6-F complex subunit 5 8 197221.tll0944 PF00101 Ribulose bisphosphate carboxylase, small chain 4 197221.tsl2097 PF10999 Protein of unknown function (DUF2839) 4 197221.tll1329 PF00498 FHA domain 5 197221.tlr1986 PF06485 Protein of unknown function (DUF1092) 7 197221.tlr2182 PF12323 Helix-turn-helix domain 14 197221.tlr2182 PF07282 Putative transposase DNA-binding domain 6 197221.tlr2348 PF11833 Protein of unknown function (DUF3353) 6 197221.tlr1666 PF12204 Domain of unknown function (DUF3598) 4 197221.tlr1208 PF11947 Protein of unknown function (DUF3464) 6 197221.tsr2284 PF12159 Protein of unknown function (DUF3593) 6 197221.tll1152 PF12323 Helix-turn-helix domain 14 197221.tll1152 PF07282 Putative transposase DNA-binding domain 6 197221.tlr0134 PF12323 Helix-turn-helix domain 14 197221.tlr0134 PF07282 Putative transposase DNA-binding domain 6 197221.tlr1444 PF11371 Protein of unknown function (DUF3172) 6 197221.tll0687 PF12323 Helix-turn-helix domain 14 197221.tll0687 PF07282 Putative transposase DNA-binding domain 6 197221.tsr2412 PF01701 Photosystem I reaction centre subunit IX / PsaJ 6 197221.tll0205 PF12323 Helix-turn-helix domain 14 197221.tll0205 PF07282 Putative transposase DNA-binding domain 6 197221.tll0447 PF10664 Cyanobacterial and plastid NDH-1 subunit M 6 197221.tll0444 PF01716 Manganese-stabilising protein / photosystem II polypeptide 6 197221.tll0113 PF02943 Ferredoxin thioredoxin reductase catalytic beta chain 5 197221.tlr1844 PF00124 Photosynthetic reaction centre protein 7 197221.tlr1843 PF00124 Photosynthetic reaction centre protein 7 197221.tlr2376 PF12323 Helix-turn-helix domain 14 197221.tlr2376 PF07282 Putative transposase DNA-binding domain 6 197221.tlr2404 PF02605 Photosystem I reaction centre subunit XI 4 197221.tsl0017 PF11910 Cyanobacterial and plant NDH-1 subunit O 6 197221.tlr1235 PF00498 FHA domain 5 197221.tlr0301 PF04839 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) 6 197221.tsr2405 PF00796 Photosystem I reaction centre subunit VIII 8 197221.tll1857 PF06485 Protein of unknown function (DUF1092) 7 197221.tll0847 PF00498 FHA domain 5 197221.tll1711 PF09366 Protein of unknown function (DUF1997) 6 197221.tlr2411 PF02507 Photosystem I reaction centre subunit III 6 197221.tlr1047 PF00862 Sucrose synthase 4 197221.tsl0469 PF12323 Helix-turn-helix domain 14 197221.tsl1517 PF02941 Ferredoxin thioredoxin reductase variable alpha chain 7 197221.tsr2277 PF10013 Uncharacterized protein conserved in bacteria (DUF2256) 6 197221.tlr0379 PF01169 Uncharacterized protein family UPF0016 4 197221.tll1078 PF05542 Protein of unknown function (DUF760) 7 197221.tlr0208 PF12049 Protein of unknown function (DUF3531) 6 197221.tsl2428 PF11347 Protein of unknown function (DUF3148) 6 197221.tll1623 PF00498 FHA domain 5 197221.tll0468 PF07282 Putative transposase DNA-binding domain 6 197221.tlr2316 PF01531 Glycosyl transferase family 11 6 197221.tlr2221 PF09353 Domain of unknown function (DUF1995) 6 197221.tll2431 PF12323 Helix-turn-helix domain 14 197221.tll2431 PF07282 Putative transposase DNA-binding domain 6 197221.tsr1242 PF05969 Photosystem II complex subunit Ycf12 8 197221.tlr1142 PF12323 Helix-turn-helix domain 14 197221.tlr1142 PF07282 Putative transposase DNA-binding domain 6 197221.tlr1491 PF00498 FHA domain 5 197221.tll1292 PF08847 Domain of unknown function (DUF1817) 7 197221.tll1504 PF00101 Ribulose bisphosphate carboxylase, small chain 4 197221.tll1505 PF02341 RbcX protein 8 197221.tll0902 PF00498 FHA domain 5 197221.tsr1416 PF08041 PetM family of cytochrome b6f complex subunit 7 6 197221.tll0016 PF03092 BT1 family 5 197221.tsr1967 PF01737 YCF9 6 197221.tlr2238 PF12323 Helix-turn-helix domain 14 197221.tlr2238 PF07282 Putative transposase DNA-binding domain 6 197221.tlr0960 PF16639 Apocytochrome F, N-terminal 6 197221.tlr0960 PF01333 Apocytochrome F, C-terminal 6 197221.tll2409 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) 6 197221.tll1929 PF09366 Protein of unknown function (DUF1997) 6 197221.tll2247 PF00961 LAGLIDADG endonuclease 23 197221.tsl0117 PF11341 Protein of unknown function (DUF3143) 6 197221.tlr1489 PF12323 Helix-turn-helix domain 14 197221.tlr1489 PF07282 Putative transposase DNA-binding domain 6 197221.tll0640 PF04983 RNA polymerase Rpb1, domain 3 4 197221.tll0641 PF04983 RNA polymerase Rpb1, domain 3 4 197221.tll1867 PF12527 Protein of unknown function (DUF3727) 6 197221.tll0026 PF01169 Uncharacterized protein family UPF0016 4 197221.tll2417 PF07282 Putative transposase DNA-binding domain 6 197221.tll2410 PF00498 FHA domain 5 197221.tlr1168 PF04483 Protein of unknown function (DUF565) 4 197221.tlr0636 PF11623 Protein of unknown function (DUF3252) 6 197221.tlr0732 PF00223 Photosystem I psaA/psaB protein 5 197221.tsr1543 PF02419 PsbL protein 11 197221.tsr1542 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits 6 197221.tsr1541 PF00284 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit 6 197221.tsr1541 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits 6 197221.tsr1544 PF01788 PsbJ 7 197221.tll0387 PF07282 Putative transposase DNA-binding domain 6 197221.tll1388 PF02392 Ycf4 6 197221.tll1499 PF10674 Protein of unknown function (DUF2488) 6 197221.tlr2323 PF12452 Protein of unknown function (DUF3685) 6 197221.tlr2322 PF12323 Helix-turn-helix domain 14 197221.tlr2322 PF07282 Putative transposase DNA-binding domain 6 197221.tll2464 PF13326 Photosystem II Pbs27 6 197221.tlr2075 PF01789 PsbP 4 197221.tlr1176 PF12323 Helix-turn-helix domain 14 197221.tlr1176 PF07282 Putative transposase DNA-binding domain 6 197221.tlr0758 PF13355 Protein of unknown function (DUF4101) 4 197221.tll1063 PF06799 Protein of unknown function (DUF1230) 6 197221.tlr0401 PF12323 Helix-turn-helix domain 14 197221.tlr0401 PF07282 Putative transposase DNA-binding domain 6 197221.tlr0406 PF12323 Helix-turn-helix domain 14 197221.tlr0406 PF07282 Putative transposase DNA-binding domain 6 197221.tll1487 PF00498 FHA domain 5 197221.tll0627 PF00498 FHA domain 5 197221.tll0625 PF12046 Protein of unknown function (DUF3529) 6 197221.tsr1840 PF11282 Protein of unknown function (DUF3082) 6 197221.tll0512 PF12323 Helix-turn-helix domain 14 197221.tll0512 PF07282 Putative transposase DNA-binding domain 6 197221.tll2476 PF07082 Protein of unknown function (DUF1350) 5 197221.tsl0388 PF12323 Helix-turn-helix domain 14 197221.tsl1386 PF00737 Photosystem II 10 kDa phosphoprotein 6 197221.tsr2013 PF06596 Photosystem II reaction centre X protein (PsbX) 7 197221.tlr1437 PF10693 Protein of unknown function (DUF2499) 6 197221.tll1723 PF11378 Protein of unknown function (DUF3181) 6 197221.tll1724 PF02531 PsaD 6 197221.tlr0257 PF12323 Helix-turn-helix domain 14 197221.tlr0257 PF07282 Putative transposase DNA-binding domain 6 197221.tll1831 PF00498 FHA domain 5 197221.tll1340 PF00498 FHA domain 5 197221.tll0748 PF03040 CemA family 4 197221.tll0685 PF11152 Protein of unknown function (DUF2930) 6 197221.tlr2471 PF00498 FHA domain 5 197221.tlr2014 PF07444 Ycf66 protein N-terminus 6 197221.tll2044 PF08855 Domain of unknown function (DUF1825) 6 197221.tlr1113 PF12323 Helix-turn-helix domain 14 197221.tlr1113 PF07282 Putative transposase DNA-binding domain 6 197221.tlr1735 PF01169 Uncharacterized protein family UPF0016 4 197221.tlr0739 PF12617 Iron-Sulfur binding protein C terminal 6 197221.tlr0731 PF00223 Photosystem I psaA/psaB protein 5 197221.tll1357 PF16983 Molybdate transporter of MFS superfamily 7 197221.tll0199 PF12483 E3 Ubiquitin ligase 11 197221.tll0604 PF12323 Helix-turn-helix domain 14 197221.tll0604 PF07282 Putative transposase DNA-binding domain 6 197221.tll0994 PF01531 Glycosyl transferase family 11 6 197221.tlr1934 PF08853 Domain of unknown function (DUF1823) 6