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Genomes encoding eukaryotic-like proteins

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PF01014 Uricase

Copy number in non-pathogens:
Mean=0.16 Stddev=0.40

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Nocardia anaemiae NBRC 100462 s 4 2
Nocardia yamanashiensis NBRC 100130 s 7 3
Nocardia mexicana NBRC 108244 s 4 2
Nocardia crassostreae s 7 3
Nocardia inohanensis NBRC 100128 s 7 3
Nocardia puris NBRC 108233 s 4 2
Nocardia niigatensis NBRC 100131 s 4 2
Nocardia concava NBRC 100430 s 4 2
Nocardia tenerifensis NBRC 101015 s 4 2
Nocardia otitidiscaviarum NBRC 14405 s 7 3
Nocardia transvalensis NBRC 15921 s 4 2
Arthrobacter luteolus NBRC 107841 s 4 2
Rhodococcus jostii NBRC 16295 s 4 2
Amycolatopsis orientalis DSM 46075 s 4 2
Amycolatopsis benzoatilytica AK 16/65 s 4 2
Nocardia brasiliensis ATCC 700358 p 4 2
Amycolatopsis jejuensis s 4 2
Nocardia seriolae s 4 2
Nocardia seriolae s 4 2

*p=pathogen;s=symbiont

Release announcements

News

  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16
  • New release 5.0 of Eukaryotic-like domains finished

    16.09.15
    F-Box domain

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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