Metamenu

Genomes encoding eukaryotic-like proteins

PF02836 Glycosyl hydrolases family 2, TIM barrel domain

Copy number in non-pathogens:
Mean=1.22 Stddev=2.61

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 s 4 12
Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 s 5 15
Bacteroides fragilis NCTC 9343 s 4 13
Alistipes timonensis JC136 s 6 18
Alistipes senegalensis JC50 s 6 18
Bacteroides fragilis 638R s 4 13
Bacteroides xylanisolvens SD CC 1b s 6 19
Bacteroides xylanisolvens SD CC 2a s 6 18
Bacteroides fragilis s 4 13
Bacteroides thetaiotaomicron s 8 23
Bacteroides thetaiotaomicron s 13 36
Bacteroides fragilis s 4 14
Bacteroides thetaiotaomicron s 8 24
Bacteroides vulgatus s 6 18
Bacteroides thetaiotaomicron s 7 22
Bacteroides vulgatus s 6 19
Bacteroides thetaiotaomicron s 9 27
Bacteroides ovatus s 8 24
Bacteroides vulgatus s 6 18
Bacteroides thetaiotaomicron s 9 27
Bacteroides intestinalis DSM 17393 s 11 31
Marvinbryantia formatexigens DSM 14469 s 4 12
Bacteroides plebeius DSM 17135 s 8 23
Bacteroides dorei DSM 17855 s 8 24
Paenibacillus sp. JDR-2 s 5 16
Bacteroides eggerthii DSM 20697 s 4 12
Bacteroides xylanisolvens SD CC 1b s 5 16
Bacteroides vulgatus PC510 s 6 18
Bacteroides xylanisolvens SD CC 2a s 6 17
Bacteroides ovatus SD CMC 3f s 5 16
Bacteroides cellulosilyticus DSM 14838 s 13 37
Bacteroides finegoldii DSM 17565 s 4 13
Parabacteroides johnsonii DSM 18315 s 6 18
Bacteroides sp. 3_1_13 s 7 21
Bacteroides fluxus YIT 12057 s 4 12
Paraprevotella clara YIT 11840 s 4 13
Paraprevotella xylaniphila YIT 11841 s 4 13
Bacteroides caccae ATCC 43185 s 4 13
Parabacteroides merdae ATCC 43184 s 6 17
Bacteroides ovatus ATCC 8483 s 11 32
Bacteroides uniformis ATCC 8492 s 6 19
Flavobacterium sp. CF136 s 5 16
Parabacteroides sp. ASF519 s 7 22
Bacteroides fragilis str. J-143-4 s 4 13
Bacteroides fragilis str. I1345 s 4 14
Bacteroides fragilis str. J38-1 s 4 13
Bacteroides fragilis str. A7 (UDC12-2) s 4 14
Bacteroides fragilis str. Ds-233 s 4 13
Bacteroides fragilis str. DS-208 s 4 14
Bacteroides fragilis str. DS-71 s 5 15
Bacteroides fragilis str. DS-166 s 4 14
Bacteroides fragilis str. 20793-3 s 5 16
Bacteroides fragilis str. 2-F-2 #4 s 5 15
Bacteroides fragilis str. 2-F-2 #7 s 5 15
Bacteroides fragilis str. 3988 T1 s 4 14
Bacteroides fragilis str. S13 L11 s 4 13
Bacteroides fragilis str. S23 R14 s 4 13
Bacteroides fragilis str. 1007-1-F #7 s 4 13
Bacteroides fragilis str. 1007-1-F #8 s 4 13
Bacteroides fragilis str. 1007-1-F #9 s 4 13
Bacteroides fragilis str. 1009-4-F #7 s 4 14
Bacteroides fragilis str. 1007-1-F #10 s 4 13
Bacteroides fragilis str. 1009-4-F #10 s 4 14
Bacteroides fragilis str. 3397 T14 s 4 14
Bacteroides fragilis str. 3397 N2 s 4 14
Bacteroides fragilis str. 3719 A10 s 5 15
Bacteroides fragilis str. 3774 T13 s 4 13
Bacteroides fragilis str. 2-F-2 #5 s 5 15
Bacteroides fragilis str. 3783N1-2 s 4 14
Bacteroides fragilis str. 3783N1-6 s 4 14
Bacteroides fragilis str. 3397 N3 s 4 14
Bacteroides fragilis str. 3719 T6 s 4 14
Bacteroides fragilis str. 3783N1-8 s 4 14
Bacteroides fragilis str. 3996 N(B) 6 s 4 14
Bacteroides fragilis str. 3783N2-1 s 4 14
Bacteroides fragilis str. 3998 T(B) 4 s 4 14
Bacteroides fragilis str. 3986 T(B)9 s 4 13
Bacteroides fragilis str. 3976T7 s 4 14
Bacteroides fragilis str. 3986T(B)10 s 4 13
Bacteroides fragilis str. 3976T8 s 5 15
Bacteroides fragilis str. 3986 T(B)13 s 4 13
Bacteroides fragilis str. 3986 N(B)22 s 4 13
Bacteroides fragilis str. 3988T(B)14 s 4 14
Bacteroides fragilis str. S6L3 s 4 13
Bacteroides fragilis str. S6L8 s 4 13
Bacteroides fragilis str. S6R5 s 4 13
Bacteroides fragilis str. S6R6 s 4 13
Bacteroides fragilis str. S24L15 s 4 13
Bacteroides fragilis str. S24L26 s 4 13
Bacteroides fragilis str. S24L34 s 4 13
Bacteroides fragilis str. S36L5 s 4 13
Bacteroides fragilis str. S36L11 s 4 13
Bacteroides fragilis str. S23L24 s 4 13
Bacteroides fragilis str. S38L3 s 4 13
Bacteroides fragilis str. S38L5 s 4 13
Bacteroides fragilis str. 3-F-2 #6 s 4 14
Bacteroides fragilis str. 34-F-2 #13 s 4 13
Bacteroides fragilis str. 1007-1-F #3 s 4 13
Bacteroides fragilis str. 1007-1-F #4 s 4 13
Bacteroides fragilis str. 3986 N(B)19 s 4 13
Bacteroides fragilis str. 3725 D9(v) s 4 14
Bacteroides fragilis str. 3998T(B)3 s 4 14
Bacteroides fragilis str. S36L12 s 4 13
Flavobacterium sp. F52 s 4 12
Clostridium sp. KLE 1755 s 8 23
Bacteroides cellulosilyticus WH2 s 13 37
Parabacteroides gordonii DSM 23371 s 8 23
Bacteroides graminisolvens DSM 19988 = JCM 15093 s 4 13
Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 s 5 15
Flavobacterium denitrificans DSM 15936 s 4 14
Echinicola pacifica DSM 19836 s 5 16
Bacteroides fragilis 3_1_12 s 6 17
Bacteroides sp. 1_1_6 s 8 23
Bacteroides sp. 2_2_4 s 8 24
Bacteroides sp. 3_2_5 s 4 13
Bacteroides sp. 4_3_47FAA s 6 18
Bacteroides sp. 9_1_42FAA s 8 24
Bacteroides sp. D1 s 6 18
Bacteroides sp. D2 s 11 32
Bacteroides dorei 5_1_36/D4 s 9 25
Paenibacillus sp. oral taxon 786 str. D14 s 4 12
Bacteroides sp. 2_1_16 s 4 14
Bacteroides sp. 2_1_22 s 6 19
Bacteroides sp. 3_1_33FAA s 8 24
Bacteroides sp. D20 s 6 17
Bacteroides sp. 3_1_23 s 9 26
Bacteroides sp. 3_1_40A s 6 17
Bacteroides sp. 4_1_36 s 5 16
Lachnospiraceae bacterium 3_1_57FAA_CT1 s 7 20
Bacteroides ovatus 3_8_47FAA s 10 29
Tannerella sp. 6_1_58FAA_CT1 s 5 16
Bacteroides sp. D22 s 7 21
Bacteroides sp. 1_1_30 s 6 19
Bacteroides oleiciplenus YIT 12058 s 14 39
Dysgonomonas gadei ATCC BAA-286 s 6 18
Bacteroides caccae CL03T12C61 s 5 16
Bacteroides cellulosilyticus CL02T12C19 s 11 30
Bacteroides dorei CL02T00C15 s 8 24
Bacteroides dorei CL02T12C06 s 8 24
Bacteroides dorei CL03T12C01 s 8 24
Bacteroides fragilis CL03T00C08 s 5 15
Bacteroides fragilis CL03T12C07 s 5 15
Bacteroides fragilis CL05T12C13 s 5 15
Bacteroides fragilis CL07T00C01 s 4 14
Bacteroides fragilis CL07T12C05 s 4 14
Bacteroides nordii CL02T12C05 s 6 18
Bacteroides ovatus CL02T12C04 s 13 36
Bacteroides ovatus CL03T12C18 s 9 25
Bacteroides salyersiae CL02T12C01 s 9 27
Bacteroides uniformis CL03T00C23 s 7 21
Bacteroides uniformis CL03T12C37 s 7 20
Bacteroides vulgatus CL09T03C04 s 6 18
Bacteroides xylanisolvens CL03T12C04 s 9 26
Parabacteroides goldsteinii CL02T12C30 s 6 19
Parabacteroides johnsonii CL02T12C29 s 6 19
Parabacteroides merdae CL03T12C32 s 7 22
Parabacteroides merdae CL09T00C40 s 6 17
Bacteroides fragilis HMW 610 s 5 16
Bacteroides fragilis HMW 615 s 5 15
Bacteroides fragilis HMW 616 s 4 14
Ochrovirga pacifica s 6 19
Bacteroides faecis MAJ27 s 9 26
Coprobacter fastidiosus NSB1 s 5 16
[Clostridium] termitidis CT1112 s 4 14
Bacteroides sp. HPS0048 s 5 16
Hungatella hathewayi 12489931 s 6 17
Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 s 8 24
Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 s 5 15
Paenibacillus mucilaginosus 3016 s 4 13
Bacteroides vulgatus ATCC 8482 s 7 22
Bacteroides fragilis s 5 16
Bacteroides fragilis s 5 16
Bacteroides fragilis s 4 13
Sphingobacterium thalpophilum DSM 11723 s 6 17
[Clostridium] cellobioparum DSM 1351 = ATCC 15832 s 4 13
Clostridium grantii DSM 8605 s 4 12
Bacteroides fragilis s 4 13
Bacteroides fragilis s 5 15
Bacteroides fragilis s 5 16
Bacteroides thetaiotaomicron s 9 26
Bacteroides thetaiotaomicron s 9 27
Bacteroides fragilis s 4 14
Bacteroides fragilis s 4 14
Bacteroides fragilis s 4 14
Bacteroides fragilis s 4 13
Bacteroides fragilis s 4 13
Bacteroides fragilis s 4 12
Parabacteroides sp. HGS0025 s 9 26
Parabacteroides gordonii MS-1 s 8 23
Parabacteroides goldsteinii DSM 19448 = WAL 12034 s 7 21
Bacteroides fragilis s 4 14
Bacteroides ovatus s 12 34
Bacteroides dorei CL03T12C01 s 7 22
Bacteroides fragilis s 4 13
Bacteroides fragilis s 5 16
Bacteroides fragilis s 4 12
Bacteroides fragilis s 4 13
Bacteroides ovatus s 11 32
Bacteroides thetaiotaomicron s 9 25
Bacteroides fragilis s 6 17
Bacteroides fragilis s 5 15
Bacteroides fragilis s 4 13
Bacteroides ovatus s 7 20
Bacteroides fragilis s 5 16
Bacteroides thetaiotaomicron s 9 26
Polaribacter reichenbachii s 6 18
Opitutaceae bacterium TSB47 s 8 23
Bacteroides vulgatus s 6 19
Bacteroides xylanisolvens s 8 23
Bacteroides ovatus s 8 24
Bacteroides ovatus s 9 26
Bacteroides xylanisolvens s 6 19
Prevotella ruminicola s 4 12
Bacteroides fragilis s 5 15
Alistipes timonensis JC136 s 6 18
Flavobacterium johnsoniae s 4 14
Bacteroides ovatus s 11 32
Bacteroides faecis MAJ27 s 9 26
Eisenbergiella tayi s 7 21
Eisenbergiella tayi s 9 25
Eisenbergiella tayi s 10 28
Eisenbergiella tayi s 7 22
Eisenbergiella tayi s 9 26
Eisenbergiella tayi s 8 23
Eisenbergiella tayi s 8 23
Bacteroides fragilis s 4 13
Paenibacillus odorifer s 4 12
Paenibacillus odorifer s 4 12
Paenibacillus odorifer s 4 12
Bacteroides fragilis s 4 13
Bacteroides thetaiotaomicron s 8 24
Flavobacterium johnsoniae s 4 14
Eisenbergiella tayi s 8 23
Sphingobacterium sp. B29 s 6 17
Polaribacter reichenbachii s 6 18
Bacteroides xylanisolvens s 7 21
Bacteroides xylanisolvens s 9 25
Bacteroides dorei s 7 22
Bacteroides ovatus s 9 25
Bacteroides dorei s 9 26
Bacteroides fragilis YCH46 s 4 14
Bacteroides thetaiotaomicron VPI-5482 s 9 25

*p=pathogen;s=symbiont