Genomes encoding eukaryotic-like proteins

PF04326 Putative DNA-binding domain

Copy number in non-pathogens:
Mean=0.42 Stddev=0.86

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bifidobacterium longum subsp. longum KACC 91563 s 4 4
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 s 4 4
Fibrobacter succinogenes subsp. succinogenes S85 s 4 4
Bifidobacterium bifidum BGN4 s 4 4
Propionibacterium propionicum F0230a s 4 4
Mogibacterium sp. CM50 s 4 4
Parabacteroides goldsteinii CL02T12C30 s 6 6
Parabacteroides sp. D25 s 5 5
Bifidobacterium longum subsp. longum 1-6B s 5 5
Corynebacterium diphtheriae bv. intermedius str. NCTC 5011 s 4 4
Actinomyces massiliensis F0489 s 4 4
Bifidobacterium bifidum IPLA 20015 s 7 7
Erysipelotrichaceae bacterium 6_1_45 s 5 5
Fusobacterium nucleatum subsp. polymorphum F0401 s 4 4
Bacteroides xylanisolvens CL03T12C04 s 5 5
Bacteroides cellulosilyticus CL02T12C19 s 6 6
Bacteroides fragilis HMW 610 s 4 4
Bacteroides fragilis HMW 615 s 4 4
Bacteroides ovatus CL02T12C04 s 5 5
Parabacteroides distasonis CL03T12C09 s 5 5
Parabacteroides distasonis CL09T03C24 s 6 6
Parabacteroides merdae CL03T12C32 s 5 5
Bacteroides fragilis HMW 616 s 4 4
Bacteroides oleiciplenus YIT 12058 s 4 4
Mycoplasma fermentans PG18 s 4 4
Eubacterium plexicaudatum ASF492 s 8 8
Clostridium sp. ASF502 s 13 12
Actinomyces massiliensis 4401292 s 4 4
Prevotella maculosa DSM 19339 = JCM 15638 s 4 4
Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 s 4 4
Parabacteroides sp. ASF519 s 6 6
Holdemania massiliensis AP2 s 4 4
Enterorhabdus caecimuris B7 s 4 4
Bifidobacterium longum subsp. longum CMCC P0001 s 4 4
Capnocytophaga granulosa ATCC 51502 s 4 4
Corynebacterium pyruviciproducens ATCC BAA-1742 s 5 5
Bifidobacterium longum D2957 s 5 5
Bacteroides pyogenes F0041 s 5 5
Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 s 4 4
Eubacterium ramulus ATCC 29099 s 4 4
Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 s 4 4
Bifidobacterium longum s 4 4
Streptococcus pneumoniae s 4 4
Streptococcus pneumoniae s 4 4
Streptococcus pneumoniae s 4 4
Streptococcus pneumoniae s 4 4
Streptococcus pneumoniae s 4 4
Streptococcus pneumoniae s 4 4
Streptococcus pneumoniae s 4 4
Streptococcus pneumoniae s 4 4
Streptococcus pneumoniae s 4 4
Streptococcus pneumoniae s 4 4
Streptococcus pneumoniae s 4 4
Streptococcus pneumoniae s 4 4
Streptococcus pneumoniae s 4 4
Streptococcus pneumoniae s 5 5
Bifidobacterium longum subsp. infantis s 4 4
Bifidobacterium longum subsp. infantis s 4 4
Bifidobacterium longum subsp. infantis s 4 4
Bifidobacterium longum subsp. infantis s 4 4
Bifidobacterium longum subsp. infantis s 4 4
Bifidobacterium longum subsp. infantis s 4 4
Bifidobacterium longum subsp. infantis s 4 4
Bifidobacterium longum subsp. infantis s 4 4
Candidatus Bacteroides timonensis AP1 s 5 5
Bacteroides xylanisolvens SD CC 1b s 5 5
Bacteroides xylanisolvens SD CC 2a s 5 5
Mucinivorans hirudinis s 5 5
Bacteroides fragilis s 4 4
Bacteroides sp. 3_1_13 s 8 8
Parabacteroides sp. D26 s 6 6
Frankia sp. DC12 s 4 4
Fusobacterium nucleatum 13_3C s 5 5
Bacteroides fragilis str. J-143-4 s 4 4
Bacteroides fragilis str. DS-208 s 4 4
Bacteroides fragilis str. DS-71 s 4 4
Bacteroides fragilis str. DS-166 s 4 4
Bacteroides fragilis str. 3988 T1 s 4 4
Bacteroides fragilis str. S13 L11 s 4 4
Bacteroides fragilis str. 1007-1-F #7 s 4 4
Bacteroides fragilis str. 1007-1-F #8 s 4 4
Bacteroides fragilis str. 1007-1-F #9 s 4 4
Bacteroides fragilis str. 1007-1-F #10 s 4 4
Bacteroides fragilis str. 3719 A10 s 4 4
Bacteroides fragilis str. 3774 T13 s 5 5
Bacteroides fragilis str. 3996 N(B) 6 s 4 4
Bacteroides fragilis str. 3998 T(B) 4 s 5 5
Bacteroides fragilis str. 3986 T(B)9 s 4 4
Bacteroides fragilis str. 3986T(B)10 s 4 4
Bacteroides fragilis str. 3986 T(B)13 s 4 4
Bacteroides fragilis str. 3986 N(B)22 s 4 4
Bacteroides fragilis str. 3988T(B)14 s 4 4
Bacteroides fragilis str. S6L3 s 4 4
Bacteroides fragilis str. S6L8 s 4 4
Bacteroides fragilis str. S6R5 s 4 4
Bacteroides fragilis str. S6R6 s 4 4
Bacteroides fragilis str. S36L5 s 5 5
Bacteroides fragilis str. S36L11 s 5 5
Bacteroides fragilis str. 1007-1-F #3 s 4 4
Bacteroides fragilis str. 1007-1-F #4 s 4 4
Bacteroides fragilis str. B1 (UDC16-1) s 4 4
Bacteroides fragilis str. 3998T(B)3 s 5 5
Bacteroides fragilis str. S36L12 s 5 5
Catonella morbi ATCC 51271 s 9 9
Actinomyces dentalis DSM 19115 s 5 5
Runella zeae DSM 19591 s 5 5
Actinomyces slackii ATCC 49928 s 4 4
Selenomonas ruminantium subsp. ruminantium ATCC 12561 s 4 4
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 s 4 4
Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 s 4 4
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 s 5 5
Parabacteroides sp. 2_1_7 s 5 5
Bacteroides sp. 9_1_42FAA s 4 4
Fusobacterium nucleatum subsp. animalis 7_1 s 4 4
Fusobacterium hwasookii ChDC F174 s 4 4
Fusobacterium nucleatum subsp. animalis ChDC F324 s 4 4
Butyricimonas virosa DSM 23226 s 4 4
Fusobacterium sp. OBRC1 s 5 5
Bifidobacterium bifidum s 4 4
Bifidobacterium gallinarum s 5 5
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 s 5 5
Bifidobacterium longum subsp. longum s 5 5
Bifidobacterium pullorum s 5 5
Bifidobacterium stellenboschense s 9 9
Bacteroides fragilis s 5 5
Bacteroides fragilis s 4 4
Selenomonas sp. AE3005 s 4 4
Selenomonas ruminantium AC2024 s 6 6
[Clostridium] aminophilum DSM 10710 s 4 4
Actinomyces israelii DSM 43320 s 4 4
Barnesiella viscericola DSM 18177 s 4 4
Fusobacterium necrophorum BL s 4 4
Fusobacterium necrophorum DJ-2 s 4 4
Fusobacterium necrophorum DJ-1 s 4 4
Fusobacterium necrophorum BFTR-2 s 6 6
Fusobacterium necrophorum DAB s 5 5
Fusobacterium necrophorum BFTR-1 s 4 4
Bifidobacterium longum s 5 5
Bacteroides fragilis s 5 5
Bacteroides fragilis s 6 6
Bifidobacterium bifidum s 4 4
Bifidobacterium bifidum s 4 4
Bifidobacterium bifidum s 4 4
Bifidobacterium bifidum s 5 5
Bifidobacterium bifidum s 6 6
Corynebacterium diphtheriae s 4 4
Bifidobacterium longum subsp. longum s 5 5
Rothia mucilaginosa s 4 4
Bacteroides fragilis s 4 4
Bacteroides fragilis s 4 4
Bacteroides fragilis s 4 4
Bacteroides fragilis s 4 4
Bacteroides fragilis s 4 4
Bacteroides fragilis s 4 4
Corynebacterium aurimucosum s 4 4
Corynebacterium aurimucosum s 4 4
Fusobacterium hwasookii ChDC F174 s 4 4
Bifidobacterium bifidum s 4 4
Bifidobacterium longum s 5 5
Bifidobacterium longum subsp. infantis s 4 4
Parabacteroides sp. HGS0025 s 4 4
Corynebacterium diphtheriae s 4 4
Corynebacterium striatum s 4 4
Bifidobacterium longum subsp. longum s 5 5
Bifidobacterium bifidum s 4 4
Bifidobacterium longum s 4 4
Prevotella corporis s 4 4
Corynebacterium riegelii s 4 4
Veillonella atypica s 4 4
Bacteroides vulgatus s 4 4
Bifidobacterium bifidum s 4 4
Fusobacterium necrophorum subsp. funduliforme s 4 4
Fusobacterium necrophorum subsp. funduliforme s 4 4
Fusobacterium necrophorum subsp. funduliforme s 4 4
Fusobacterium necrophorum subsp. funduliforme s 4 4
Fusobacterium necrophorum subsp. funduliforme s 4 4
Fusobacterium necrophorum subsp. funduliforme s 4 4
Fusobacterium nucleatum CTI-1 s 4 4
Bifidobacterium longum E18 s 4 4
Fibrobacter succinogenes subsp. succinogenes S85 s 4 4
Bacteroides sp. 2_1_33B s 6 6
Bacteroides sp. 2_1_22 s 5 5
Bacteroides sp. 3_1_33FAA s 8 8
Bacteroides ovatus SD CMC 3f s 5 5
Bacteroides xylanisolvens SD CC 2a s 4 4
Prevotella ruminicola 23 s 6 6
Bacteroides vulgatus PC510 s 4 4
Bacteroides xylanisolvens SD CC 1b s 5 5
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 s 4 4
Bifidobacterium longum subsp. longum JDM301 s 4 4
Bacteroides sp. 3_1_19 s 4 4
Parabacteroides sp. 20_3 s 5 5
Mobiluncus mulieris ATCC 35239 s 4 4
Mycoplasma fermentans JER s 4 4
Diplosphaera colitermitum TAV2 s 5 5
Marvinbryantia formatexigens DSM 14469 s 5 5
Bacteroides finegoldii DSM 17565 s 6 6
Butyrivibrio crossotus DSM 2876 s 4 4
Holdemanella biformis DSM 3989 s 4 4
Blautia hansenii DSM 20583 s 4 4
Prevotella copri DSM 18205 s 4 4
Bacteroides cellulosilyticus DSM 14838 s 4 4
Bifidobacterium longum subsp. infantis CCUG 52486 s 4 4
Holdemania filiformis DSM 12042 s 4 4
Capnocytophaga gingivalis ATCC 33624 s 4 4
Bifidobacterium longum subsp. longum ATCC 55813 s 5 5
Bacteroides sp. 1_1_6 s 5 5
Bacteroides sp. 3_2_5 s 4 4
Bacteroides sp. 4_3_47FAA s 4 4
Bacteroides sp. D1 s 5 5
Fusobacterium nucleatum subsp. animalis 7_1 s 4 4
Oribacterium sp. oral taxon 078 str. F0262 s 5 5
Parabacteroides sp. D13 s 4 4
Corynebacterium diphtheriae NCTC 13129 s 4 4
Bacteroides vulgatus ATCC 8482 s 5 5
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 s 4 4
Bifidobacterium longum DJO10A s 4 4
Bifidobacterium bifidum PRL2010 s 4 4
[Eubacterium] cellulosolvens 6 s 5 5
Bifidobacterium sp. 12_1_47BFAA s 4 4
Eggerthella sp. 1_3_56FAA s 6 6
Bacteroides sp. 3_1_40A s 6 6
Mycoplasma fermentans M64 s 5 5
Bifidobacterium longum subsp. longum JCM 1217 s 5 5
Phascolarctobacterium succinatutens YIT 12067 s 4 4
Bacteroides thetaiotaomicron VPI-5482 s 7 7
Bacteroides salanitronis DSM 18170 s 4 4
Eggerthella sp. HGA1 s 5 5
Prevotella denticola CRIS 18C-A s 4 4
Bacteroides fluxus YIT 12057 s 4 4
Mycoplasma mycoides subsp. capri LC str. 95010 s 4 4
Bacteroides sp. 1_1_30 s 6 6
Lachnospiraceae bacterium 1_4_56FAA s 4 4
Prevotella sp. C561 s 6 6
Erysipelotrichaceae bacterium 2_2_44A s 4 4
Paraprevotella clara YIT 11840 s 5 5
Hungatella hathewayi WAL-18680 s 6 6
Oribacterium asaccharolyticum ACB7 s 5 5
Erysipelotrichaceae bacterium 21_3 s 4 4
Tannerella forsythia 92A2 s 4 4
Corynebacterium diphtheriae CDCE 8392 s 4 4
Corynebacterium diphtheriae HC03 s 4 4
Corynebacterium diphtheriae HC04 s 4 4
Corynebacterium diphtheriae VA01 s 4 4
Corynebacterium diphtheriae 31A s 4 4
Corynebacterium diphtheriae BH8 s 4 4
Sutterella parvirubra YIT 11816 s 4 4

*p=pathogen;s=symbiont