Genomes encoding eukaryotic-like proteins

PF13936 Helix-turn-helix domain

Copy number in non-pathogens:
Mean=0.49 Stddev=1.18

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Neisseria meningitidis 8013 s 5 7
Neisseria meningitidis WUE 2594 s 7 9
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 s 7 9
Neisseria meningitidis alpha710 s 5 7
Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 s 13 17
Lactobacillus fermentum CECT 5716 s 8 10
Neisseria meningitidis M01-240355 s 4 6
Neisseria meningitidis M01-240149 s 4 6
Neisseria meningitidis M04-240196 s 7 9
Neisseria meningitidis H44/76 s 8 10
Ornithobacterium rhinotracheale DSM 15997 s 6 8
Streptococcus iniae 9117 s 7 9
Streptococcus dysgalactiae subsp. equisimilis AC-2713 s 13 16
Neisseria meningitidis OX99.30304 s 5 7
Neisseria meningitidis M0579 s 6 8
Neisseria meningitidis CU385 s 6 8
Neisseria meningitidis M01-240013 s 4 6
Streptococcus suis R61 s 7 9
Streptococcus pneumoniae GA47368 s 4 6
Streptococcus pneumoniae GA11184 s 5 7
Streptococcus pneumoniae GA44452 s 4 6
Streptococcus pneumoniae GA49447 s 4 6
Streptococcus pneumoniae 5787-06 s 8 10
Streptococcus pneumoniae GA41277 s 4 6
Streptococcus pneumoniae GA43380 s 4 6
Streptococcus pneumoniae NorthCarolina6A-23 s 5 7
Streptococcus pneumoniae EU-NP05 s 5 7
Streptococcus pneumoniae GA40183 s 6 8
Streptococcus pneumoniae GA40410 s 5 7
Streptococcus pneumoniae GA13224 s 5 7
Streptococcus pneumoniae GA02714 s 4 6
Streptococcus pneumoniae GA04175 s 6 8
Streptococcus pneumoniae GA19101 s 4 6
Streptococcus pneumoniae GA44386 s 4 6
Streptococcus pneumoniae GA47522 s 4 6
Lactobacillus coryniformis subsp. coryniformis CECT 5711 s 10 13
Streptococcus pneumoniae SPAR95 s 4 6
Streptococcus pneumoniae GA62681 s 4 6
Neisseria meningitidis 93004 s 8 10
Neisseria meningitidis NM3081 s 6 8
Acinetobacter baumannii Naval-82 s 6 8
Lactobacillus crispatus FB049-03 s 8 10
Lactobacillus crispatus FB077-07 s 6 8
Neisseria meningitidis NM422 s 5 7
Neisseria meningitidis 97021 s 5 7
Neisseria meningitidis 88050 s 7 9
Neisseria meningitidis 2006087 s 6 8
Neisseria meningitidis 2002038 s 6 8
Neisseria meningitidis 97014 s 5 7
Neisseria meningitidis M13255 s 8 10
Neisseria meningitidis NM418 s 6 8
Neisseria meningitidis 9506 s 7 9
Neisseria meningitidis 9757 s 8 10
Neisseria meningitidis 12888 s 6 8
Neisseria meningitidis 4119 s 4 6
Neisseria meningitidis 2004090 s 7 9
Neisseria meningitidis 96023 s 7 9
Neisseria meningitidis 61103 s 4 6
Neisseria meningitidis 97020 s 6 8
Neisseria meningitidis NM3652 s 7 9
Neisseria meningitidis NM3642 s 6 8
Neisseria meningitidis 2007056 s 5 7
Neisseria meningitidis 2001212 s 5 7
Neisseria meningitidis 77221 s 6 8
Mycoplasma cynos C142 s 4 6
Streptococcus pneumoniae PCS8106 s 9 12
Streptococcus pneumoniae PCS8203 s 12 15
Streptococcus pneumoniae PCS8235 s 4 6
Streptococcus pneumoniae SPN032672 s 6 8
Streptococcus pneumoniae SPN033038 s 8 10
Amycolatopsis benzoatilytica AK 16/65 s 4 6
Streptococcus anginosus C238 s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Streptococcus pneumoniae s 4 6
Bifidobacterium longum subsp. infantis s 6 8
Bifidobacterium longum subsp. infantis s 6 8
Bifidobacterium longum subsp. infantis s 6 8
Bifidobacterium longum subsp. infantis s 6 8
Bifidobacterium longum subsp. infantis s 6 8
Bifidobacterium longum subsp. infantis s 5 7
Bifidobacterium longum subsp. infantis s 5 7
Bifidobacterium longum subsp. infantis s 6 8
Lactobacillus fermentum s 4 6
Lactobacillus fermentum 3872 s 9 12
Piscirickettsia salmonis AUSTRAL-005 s 42 51
Acinetobacter baumannii 348935 s 6 8
Acinetobacter baumannii 1295259 s 6 8
Acinetobacter baumannii 1475718 s 4 6
Acinetobacter baumannii 230853 s 5 7
Acinetobacter baumannii 1106579 s 5 7
Acinetobacter baumannii 83444 s 4 6
Acinetobacter baumannii 923118 s 4 6
Acinetobacter baumannii 1130196 s 7 9
Piscirickettsia salmonis LF-89 = ATCC VR-1361 s 35 42
Piscirickettsia salmonis LF-89 = ATCC VR-1361 s 4 6
Lactobacillus mucosae LM1 s 6 8
Acinetobacter baumannii 263903-2 s 4 6
Lactobacillus brevis AG48 s 14 18
Neisseria meningitidis M0579 s 6 8
Photorhabdus temperata subsp. khanii NC19 s 4 6
Xanthomonas oryzae pv. oryzae PXO99A s 16 20
Acinetobacter baumannii 44467_9 s 4 6
Acinetobacter baumannii 44298_4 s 5 7
Acinetobacter baumannii 1451147 s 5 7
Acinetobacter baumannii 25977_9 s 4 6
Acinetobacter baumannii 1276470-132 s 4 6
Neisseria meningitidis s 8 11
Alteromonadaceae bacterium Bs12 s 4 6
Streptococcus pyogenes s 14 18
Exiguobacterium aurantiacum DSM 6208 s 7 9
Endozoicomonas numazuensis s 4 6
Francisella philomiragia s 13 17
Morococcus cerebrosus s 8 10
Streptococcus anginosus s 4 6
Bifidobacterium longum subsp. infantis s 7 9
Lactobacillus plantarum s 5 7
Streptococcus iniae s 7 9
Streptococcus salivarius s 4 6
Lactobacillus plantarum s 8 11
Lactobacillus fermentum s 13 17
Streptococcus pyogenes s 7 9
Mycobacterium senegalense s 4 6
Piscirickettsia salmonis LF-89 = ATCC VR-1361 s 5 7
Lactobacillus reuteri s 11 14
Lactobacillus crispatus s 4 6
Lactobacillus plantarum s 12 15
Lactobacillus gallinarum s 12 15
Streptococcus infantarius s 4 6
Streptococcus equinus s 6 8
Lactobacillus plantarum s 4 6
Lactobacillus oris s 8 11
Lactobacillus plantarum s 4 6
Streptococcus mitis B6 s 37 45
Prevotella disiens FB035-09AN s 10 13
Shigella dysenteriae 1012 s 8 10
Streptococcus pneumoniae SP11-BS70 s 4 6
Lactobacillus reuteri SD2112 s 9 12
Neisseria meningitidis MC58 s 11 14
Streptococcus pyogenes MGAS8232 s 8 10
Lactobacillus paracasei ATCC 334 s 22 27
Streptococcus pyogenes MGAS10394 s 6 8
Xanthomonas oryzae pv. oryzae KACC 10331 s 19 23
Xanthomonas oryzae pv. oryzae MAFF 311018 s 19 24
Neisseria meningitidis 053442 s 4 6
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 s 7 9
Lactobacillus fermentum IFO 3956 s 8 10
Streptococcus dysgalactiae subsp. equisimilis GGS_124 s 8 10
Francisella philomiragia subsp. philomiragia ATCC 25017 s 6 8
Lactobacillus casei BL23 s 4 6
Lactobacillus crispatus CTV-05 s 14 18
Lactobacillus delbrueckii subsp. bulgaricus ND02 s 4 6
Streptococcus salivarius CCHSS3 s 6 8
Streptococcus ictaluri 707-05 s 14 18
Acinetobacter lwoffii WJ10621 s 4 6

*p=pathogen;s=symbiont