Metamenu

Genomes encoding eukaryotic-like proteins

PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus

Copy number in non-pathogens:
Mean=0.64 Stddev=0.55

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Nocardia africana NBRC 100379 s 6 4
Nocardia elegans NBRC 108235 s 6 4
Nocardia mexicana NBRC 108244 s 4 3
Nocardia seriolae s 15 9
Nocardia seriolae s 15 9
Nocardia arthritidis NBRC 100137 s 6 4
Nocardia crassostreae s 4 3
Nocardia mikamii NBRC 108933 s 4 3
Nocardia puris NBRC 108233 s 6 4
Nocardia vaccinii NBRC 15922 s 7 5
Mycobacterium novocastrense s 4 3
Nocardia asiatica NBRC 100129 s 6 4
Nocardia niigatensis NBRC 100131 s 6 4
Nocardia higoensis NBRC 100133 s 4 3
Nocardia pneumoniae NBRC 100136 s 4 3
Nocardia veterana NBRC 100344 s 4 3
Nocardia aobensis NBRC 100429 s 4 3
Nocardia otitidiscaviarum NBRC 14405 s 4 3
Mycobacterium tuberculosis s 4 3
Mycobacterium marinum E11 s 4 3
Clostridioides difficile s 4 3
Clostridioides difficile s 4 3
Mycobacterium parascrofulaceum ATCC BAA-614 s 4 3
Mycobacterium haemophilum DSM 44634 s 6 4
Mycobacterium hassiacum DSM 44199 s 4 3
Amycolatopsis benzoatilytica AK 16/65 s 6 4
Mycobacterium sp. 012931 s 4 3
Mycobacterium phlei RIVM601174 s 4 3
Clostridioides difficile QCD-76w55 s 4 3
Mycobacterium hassiacum DSM 44199 s 4 3
Mycobacterium kansasii ATCC 12478 s 4 3
Mycobacterium liflandii 128FXT s 4 3
Nocardia brasiliensis ATCC 700358 p 4 3
Mycobacterium marinum M s 4 3
Mycobacterium kansasii s 4 3
Nocardia seriolae s 15 9
Streptomyces pluripotens s 4 3
Mycobacterium europaeum s 4 3
Mycobacterium gastri s 4 3
Mycobacterium shimoidei s 4 3
Mycobacterium ulcerans s 4 3
Mycobacterium kansasii s 4 3
Mycobacterium kansasii s 4 3
Mycobacterium kansasii s 4 3
Mycobacterium kansasii s 4 3
Mycobacterium kansasii s 4 3
Mycobacterium kansasii s 4 3
Mycobacterium malmoense s 4 3
Mycobacterium malmoense s 4 3
Mycobacterium malmoense s 6 4
Mycobacterium malmoense s 4 3
Mycobacterium scrofulaceum s 4 3
Mycobacterium scrofulaceum s 4 3
Mycobacterium malmoense s 4 3
Nocardia seriolae s 13 8
Nocardia seriolae s 15 9
Mycobacterium shimoidei s 4 3
Mycobacterium scrofulaceum s 4 3
Nocardia seriolae s 13 8
Mycobacterium kansasii s 4 3
Mycobacterium kansasii s 4 3
Mycobacterium kansasii s 4 3
Mycobacterium kansasii s 4 3
Mycobacterium kansasii s 4 3
Mycobacterium kansasii s 4 3
Mycobacterium kansasii s 4 3

*p=pathogen;s=symbiont