Effective results for Bizionia argentinensis JUB59 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 23 proteins (1 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1046627.BZARG_2582(PF16117)ER
1046627.BZARG_611(PF02709)(mitochondrial)
1046627.BZARG_1577(PF01541)(mitochondrial)
1046627.BZARG_1623(PF03321)(ER); ER
1046627.BZARG_2731(PF01679)ER; not used
1046627.BZARG_847(PF01679)ER; not used
1046627.BZARG_1153(PF09112) (PF09113)
1046627.BZARG_1564(PF01541)
1046627.BZARG_827(PF07766)
1046627.BZARG_3060(PF03321)
1046627.BZARG_443(PF01541)
1046627.BZARG_2854PF00240
1046627.BZARG_2069(PF08392)
1046627.BZARG_1783(PF01541)
1046627.BZARG_2315(PF01541)
1046627.BZARG_1673(PF01541)not used
1046627.BZARG_620(PF02709)
1046627.BZARG_1983(PF03321)
1046627.BZARG_2436(PF01541)
1046627.BZARG_605(PF02709)
1046627.BZARG_1524(PF01541)
1046627.BZARG_397(PF08662)
1046627.BZARG_1579(PF01541)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================