Effective results for Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 63 proteins (6 high, 57 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1048834.TC41_2958				(PF12323)	(mitochondrial)
1048834.TC41_1045				(PF13276)	(mitochondrial)
1048834.TC41_1043				(PF13276)	mitochondrial
1048834.TC41_1837				(PF13276)	(mitochondrial)
1048834.TC41_1839				(PF13276)	mitochondrial
1048834.TC41_1441				(PF13276)	(mitochondrial)
1048834.TC41_0039				(PF12323)	(mitochondrial)
1048834.TC41_0859				(PF12323)	(mitochondrial)
1048834.TC41_0853				(PF12323)	(mitochondrial)
1048834.TC41_0300				(PF12323)	(mitochondrial)
1048834.TC41_0304				PF08389	ER; (ER)
1048834.TC41_0793				(PF01969)	(ER)
1048834.TC41_0663				(PF12323)	(mitochondrial); mitochondrial
1048834.TC41_1115				(PF13276)	mitochondrial
1048834.TC41_1100				(PF13276)	(mitochondrial)
1048834.TC41_1102				(PF13276)	mitochondrial
1048834.TC41_1215				(PF13276)	mitochondrial
1048834.TC41_2475				PF01828	ER
1048834.TC41_0645				(PF12323)	(mitochondrial)
1048834.TC41_0423				(PF12323)	(mitochondrial)
1048834.TC41_3188				PF01828	ER; (ER)
1048834.TC41_2291				(PF02681)	ER
1048834.TC41_3226				(PF12323)	(mitochondrial)
1048834.TC41_0755				(PF09992)	ER
1048834.TC41_1807				(PF13276)	(mitochondrial)
1048834.TC41_2380				(PF12224)	plastid
1048834.TC41_2414				(PF12323)	(mitochondrial)
1048834.TC41_2741				PF01828	plastid
1048834.TC41_1762				(PF09992)	(plastid)
1048834.TC41_1711				(PF12224)	plastid
1048834.TC41_2723				(PF02679)
1048834.TC41_0150				(PF03050)
1048834.TC41_0151				(PF03050)
1048834.TC41_1048				(PF03050)
1048834.TC41_2426				(PF09992)
1048834.TC41_0022				(PF03050)
1048834.TC41_0561				(PF13921)
1048834.TC41_2979				(PF03050)
1048834.TC41_1843				(PF03050)
1048834.TC41_2986				(PF03050)
1048834.TC41_1859				PF00627
1048834.TC41_1187				(PF13921)
1048834.TC41_2379				(PF06094)
1048834.TC41_2994				(PF03050)
1048834.TC41_1083				(PF02681)
1048834.TC41_1795				(PF06094)
1048834.TC41_1797				(PF03050)
1048834.TC41_1228				(PF02679)
1048834.TC41_2324				PF01828
1048834.TC41_0863				(PF09992)
1048834.TC41_0799				(PF01969)
1048834.TC41_0792				(PF01969)
1048834.TC41_0403				(PF08950)
1048834.TC41_1114				(PF03050)
1048834.TC41_1779				(PF06094)
1048834.TC41_0633				(PF09992)
1048834.TC41_1378				(PF06094)
1048834.TC41_0374				(PF03050)
1048834.TC41_1710				(PF06094)
1048834.TC41_2446				(PF06094)
1048834.TC41_1818				(PF03050)
1048834.TC41_1497				(PF09992)
1048834.TC41_1816				(PF03050)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================