Metamenu

Effective results for Paracoccus denitrificans SD1 (eggnog40)

Summary

Number of putative secreted proteins: 78
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 78 proteins (1 high, 77 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1051075.PDI_2398(PF00115)ER
1051075.PDI_2429(PF01970)(ER)
1051075.PDI_3626(PF00115)ER
1051075.PDI_2506(PF01970)ER
1051075.PDI_0901(PF05161)ER
1051075.PDI_1316(PF01970)(ER)
1051075.PDI_0570(PF01970)(ER)
1051075.PDI_1768(PF01970)ER
1051075.PDI_1765(PF00115)ER
1051075.PDI_1439(PF01970)(mitochondrial)
1051075.PDI_1443(PF02538)ER
1051075.PDI_0607(PF01970)ER
1051075.PDI_1074(PF00115)ER
1051075.PDI_3713(PF00113)(mitochondrial)
1051075.PDI_3385(PF01268)(mitochondrial); mitochondrial
1051075.PDI_1386(PF00115)(mitochondrial); plastid
1051075.PDI_3613(PF02867)(mitochondrial)
1051075.PDI_1347(PF05292)(plastid)
1051075.PDI_2041(PF09330)(ER)
1051075.PDI_3306(PF02882)mitochondrial; not used
1051075.PDI_0089PF14700 (PF00940)
1051075.PDI_0533(PF02867)(mitochondrial)
1051075.PDI_1260(PF09458)(mitochondrial)
1051075.PDI_2103(PF00115)(mitochondrial)
1051075.PDI_0502(PF05161)(mitochondrial); not used
1051075.PDI_1671(PF02538)(mitochondrial)
1051075.PDI_0198(PF00115)ER; not used
1051075.PDI_3091(PF02867)(mitochondrial)
1051075.PDI_3603(PF01970)
1051075.PDI_0264(PF00709)
1051075.PDI_0640(PF00115)
1051075.PDI_0254(PF05544)
1051075.PDI_1723(PF08442)not used
1051075.PDI_2245(PF00709)
1051075.PDI_2884(PF00709)
1051075.PDI_3440(PF05292)
1051075.PDI_3441(PF05544)
1051075.PDI_3131(PF00115)
1051075.PDI_3622(PF01268)not used
1051075.PDI_0111(PF00113)
1051075.PDI_0753(PF02867)
1051075.PDI_3283(PF01977)
1051075.PDI_3455(PF01970)
1051075.PDI_15011(PF02538)
1051075.PDI_3123(PF02882)
1051075.PDI_2195(PF05544)
1051075.PDI_3484(PF00115)
1051075.PDI_2994(PF02867)
1051075.PDI_2991(PF01094)
1051075.PDI_3159(PF01268)
1051075.PDI_3154(PF00162)
1051075.PDI_1173(PF05161)
1051075.PDI_1796(PF08442)
1051075.PDI_0364(PF00115)
1051075.PDI_2843(PF02538)
1051075.PDI_2947(PF00115)
1051075.PDI_3545(PF01268)
1051075.PDI_2312(PF09330)
1051075.PDI_2956(PF01268)
1051075.PDI_3683(PF00113)
1051075.PDI_1042(PF05544)
1051075.PDI_1262(PF05544)
1051075.PDI_0170(PF01977)
1051075.PDI_2816(PF01977)
1051075.PDI_2765(PF00115)
1051075.PDI_2587(PF02882)not used
1051075.PDI_0333(PF04998)
1051075.PDI_2637(PF02538)
1051075.PDI_0296(PF02538)
1051075.PDI_2752(PF01977)
1051075.PDI_3404(PF08442)
1051075.PDI_0445(PF05544)
1051075.PDI_1399(PF05544)
1051075.PDI_0870(PF01970)
1051075.PDI_0389(PF04998)
1051075.PDI_0382(PF00113)
1051075.PDI_1704(PF08442)
1051075.PDI_0727(PF00162)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================