Effective results for Francisella tularensis subsp. tularensis SCHU S4 (eggnog40)

Summary

Number of putative secreted proteins: 72
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 72 proteins (46 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
177416.FTT_0686c				(PF00854)	ER
177416.FTT_1046c				(PF04193)	ER
177416.FTT_0256c				(PF05686)	mitochondrial
177416.FTT_1688				(PF03222)	mitochondrial
177416.FTT_1126				(PF03222)	ER
177416.FTT_1510c				(PF03222)	ER; (ER)
177416.FTT_1253				(PF00854)	ER; (ER)
177416.FTT_0651				(PF00854)	mitochondrial; (mitochondrial)
177416.FTT_0877c				(PF04193)	mitochondrial
177416.FTT_1233c				(PF00854)	ER
177416.FTT_1502				(PF03222)	ER
177416.FTT_1732c				(PF03222)	ER
177416.FTT_0242				(PF09419)	mitochondrial
177416.FTT_1342				(PF02931)	ER
177416.FTT_1005c				(PF00854)	ER
177416.FTT_0354				(PF04488)	(ER)
177416.FTT_0350				(PF01000) (PF01193)
177416.FTT_0378c				(PF04488)	(ER)
177416.FTT_1668				(PF03222)	(ER)
177416.FTT_0953c				(PF00854)	(ER)
177416.FTT_1263c				(PF04488)	(ER)
177416.FTT_1442c				(PF01000) (PF01193)
177416.FTT_0352				PF13358
177416.FTT_1142c				PF13358
177416.FTT_0779				PF13358
177416.FTT_0572				(PF00854)
177416.FTT_0822				PF13358
177416.FTT_1427				PF13358
177416.FTT_0171				PF13358
177416.FTT_0216				PF13358
177416.FTT_0363				PF13358
177416.FTT_1548				PF13358
177416.FTT_1780				PF13358
177416.FTT_0098c				PF13358
177416.FTT_0377				PF13358
177416.FTT_1232				PF13358
177416.FTT_0357c				PF13358
177416.FTT_1599c				PF13358
177416.FTT_0722c				PF13358
177416.FTT_0513c				PF13358
177416.FTT_0131c				PF13358
177416.FTT_0712c				(PF03222)
177416.FTT_1481c				PF13358
177416.FTT_0355c				PF13358
177416.FTT_1742c				PF13358
177416.FTT_1669				PF13358
177416.FTT_1262				PF13358
177416.FTT_0004c				PF13358
177416.FTT_1692				PF13358
177416.FTT_1065c				PF13358
177416.FTT_1756c				PF13358
177416.FTT_1265c				PF13358
177416.FTT_1363c				PF13358
177416.FTT_1697c				PF13358
177416.FTT_1074				PF13358
177416.FTT_0253c				PF13358
177416.FTT_1718c				PF13358
177416.FTT_0446				(PF00854)
177416.FTT_1620				PF13358
177416.FTT_0848				(PF10013)	not used
177416.FTT_1584c				PF13358
177416.FTT_0273				PF13358
177416.FTT_1386				PF13358
177416.FTT_0226c				PF13358
177416.FTT_1210c				PF13358
177416.FTT_0561				PF13358
177416.FTT_1615				PF13358
177416.FTT_0920				PF13358
177416.FTT_0247				PF13358
177416.FTT_0440c				PF13358
177416.FTT_0765				PF13358
177416.FTT_0692c				PF13358

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 0.125 (1/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================