Effective results for Escherichia coli CFT073 (eggnog40)
Summary
Number of putative secreted proteins: 242
- Predicted by T4SEpre: 112
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 143 proteins (0 high, 143 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 199310.c3553 | (PF03711) (PF01276) | (mitochondrial); (plastid) | |||
| 199310.c0079 | + | mitochondrial; (mitochondrial) | |||
| 199310.c4767 | (PF00549) | (mitochondrial) | |||
| 199310.c3914 | (PF03222) | (ER); ER | |||
| 199310.c1996 | + | ER | |||
| 199310.c3610 | + | ER | |||
| 199310.c3612 | (PF01527) | (ER) | |||
| 199310.c4390 | + | ER | |||
| 199310.c0003 | (PF00696) | (mitochondrial); mitochondrial | |||
| 199310.c0478 | (PF03797) | ER; (ER) | |||
| 199310.c1877 | + | (mitochondrial) | |||
| 199310.c1474 | (PF08242) | (ER) | |||
| 199310.c4366 | (PF03797) | mitochondrial | |||
| 199310.c0700 | (PF00939) | ER | |||
| 199310.c4632 | (PF03222) | (ER) | |||
| 199310.c3630 | + | (ER) | |||
| 199310.c0393 | (PF03797) | (mitochondrial) | |||
| 199310.c0651 | (PF08242) | (ER) | |||
| 199310.c2894 | (PF03797) | (mitochondrial) | |||
| 199310.c0819 | + | ER | |||
| 199310.c1811 | + | ER | |||
| 199310.c2476 | + | ER | |||
| 199310.c2712 | + | (ER); ER | |||
| 199310.c1266 | + | ER | |||
| 199310.c3025 | + | ER | |||
| 199310.c1803 | + | ER | |||
| 199310.c3655 | (PF03797) | mitochondrial | |||
| 199310.c4284 | (PF01116) | (mitochondrial) | |||
| 199310.c1654 | (PF01204) | ER | |||
| 199310.c0757 | (PF00939) | ER | |||
| 199310.c4197 | (PF05189) | (mitochondrial) | |||
| 199310.c3640 | + | (PF01527) | (mitochondrial) | ||
| 199310.c3081 | + | ER | |||
| 199310.c1121 | (PF00328) | ER | |||
| 199310.c5037 | (PF00549) | (mitochondrial) | |||
| 199310.c1737 | (PF01343) | ER; (ER) | |||
| 199310.c3078 | + | mitochondrial; ER | |||
| 199310.c3180 | (PF00959) | ER | |||
| 199310.c1137 | (PF00328) | ER | |||
| 199310.c1356 | + | (mitochondrial) | |||
| 199310.c2323 | (PF03222) | ER; (ER) | |||
| 199310.c0610 | + | ER | |||
| 199310.c1617 | (PF13436) | ER | |||
| 199310.c2621 | (PF01116) | (mitochondrial) | |||
| 199310.c1108 | + | (mitochondrial) | |||
| 199310.c2136 | + | ER; (ER) | |||
| 199310.c0345 | (PF13332) | ER | |||
| 199310.c4890 | (PF05708) | ER | |||
| 199310.c3338 | + | mitochondrial; ER | |||
| 199310.c1204 | + | ER | |||
| 199310.c3838 | (PF01204) | ER | |||
| 199310.c0893 | + | ER | |||
| 199310.c4786 | + | ER | |||
| 199310.c4237 | + | ER | |||
| 199310.c2182 | + | (mitochondrial) | |||
| 199310.c5259 | + | ER | |||
| 199310.c3953 | + | ER | |||
| 199310.c0426 | (PF03797) | mitochondrial | |||
| 199310.c0957 | (PF00959) | ER | |||
| 199310.c3814 | (PF00939) | ER | |||
| 199310.c2966 | + | ER | |||
| 199310.c2170 | (PF01343) | ER | |||
| 199310.c0234 | (PF05708) | ER | |||
| 199310.c1436 | (PF00959) | ER | |||
| 199310.c4102 | + | ER | |||
| 199310.c3011 | + | ER | |||
| 199310.c0847 | (PF00939) | ER | |||
| 199310.c4229 | + | mitochondrial; (mitochondrial) | |||
| 199310.c2428 | (PF08242) | (mitochondrial) | |||
| 199310.c4910 | (PF01228) | (mitochondrial) | |||
| 199310.c1423 | + | ER | |||
| 199310.c4354 | (PF03222) | (mitochondrial) | |||
| 199310.c3931 | + | ER | |||
| 199310.c4548 | + | (mitochondrial); mitochondrial | |||
| 199310.c3170 | (PF01343) | mitochondrial | |||
| 199310.c4018 | (PF01116) | (mitochondrial) | |||
| 199310.c3619 | (PF03797) | (mitochondrial) | |||
| 199310.c4484 | (PF01116) | (mitochondrial) | |||
| 199310.c4389 | + | (mitochondrial) | |||
| 199310.c0635 | (PF00696) | (mitochondrial) | |||
| 199310.c5122 | (PF03711) (PF01276) | ||||
| 199310.c0397 | (PF03400) | (mitochondrial); not used | |||
| 199310.c4058 | + | (mitochondrial) | |||
| 199310.c4537 | (PF01228) | (mitochondrial) | |||
| 199310.c5197 | + | (PF13276) | |||
| 199310.c2426 | + | (ER) | |||
| 199310.c2760 | + | (mitochondrial) | |||
| 199310.c0777 | (PF03711) (PF01276) | ||||
| 199310.c3218 | + | (mitochondrial) | |||
| 199310.c2922 | (PF05524) | (mitochondrial) | |||
| 199310.c3375 | + | (mitochondrial) | |||
| 199310.c3442 | (PF03222) | (ER) | |||
| 199310.c4501 | (PF03711) (PF01276) | ||||
| 199310.c1596 | + | (plastid) | |||
| 199310.c1205 | (PF13332) | (mitochondrial) | |||
| 199310.c1206 | (PF13332) | (mitochondrial) | |||
| 199310.c1562 | (PF00959) | (ER) | |||
| 199310.c0224 | (PF03711) (PF01276) | ||||
| 199310.c3574 | + | (ER) | |||
| 199310.c5140 | (PF03711) (PF01276) | ||||
| 199310.c2304 | + | (mitochondrial) | |||
| 199310.c0444 | + | (PF00696) | |||
| 199310.c2429 | (PF08242) | (mitochondrial) | |||
| 199310.c5168 | (PF01527) | ||||
| 199310.c5167 | (PF13276) | ||||
| 199310.c4581 | + | ||||
| 199310.c4764 | (PF00696) | ||||
| 199310.c1085 | + | ||||
| 199310.c1358 | + | ||||
| 199310.c2240 | + | ||||
| 199310.c1846 | + | ||||
| 199310.c3103 | (PF01228) | ||||
| 199310.c3617 | (PF01527) | ||||
| 199310.c3611 | (PF13276) | ||||
| 199310.c5622 | + | ||||
| 199310.c3725 | (PF03738) | ||||
| 199310.c5196 | (PF01527) | ||||
| 199310.c4483 | (PF01116) | ||||
| 199310.c5178 | (PF13276) | ||||
| 199310.c5177 | (PF01527) | ||||
| 199310.c1448 | (PF01343) | ||||
| 199310.c4396 | (PF02615) | ||||
| 199310.c1615 | (PF03797) | ||||
| 199310.c4157 | + | ||||
| 199310.c0470 | + | ||||
| 199310.c0908 | (PF01228) | ||||
| 199310.c2520 | + | ||||
| 199310.c0872 | + | ||||
| 199310.c2410 | + | ||||
| 199310.c2418 | + | ||||
| 199310.c3424 | (PF05524) | ||||
| 199310.c4815 | + | ||||
| 199310.c1273 | (PF03797) | ||||
| 199310.c4387 | + | ||||
| 199310.c0642 | + | ||||
| 199310.c0805 | (PF00549) | ||||
| 199310.c0806 | (PF00549) | ||||
| 199310.c3120 | + | ||||
| 199310.c3129 | + | ||||
| 199310.c3822 | + | ||||
| 199310.c4104 | + | ||||
| 199310.c3440 | + | ||||
| 199310.c3412 | (PF00696) | ||||
| 199310.c1263 | (PF01527) | ||||
| 199310.c1262 | (PF13276) | ||||
| 199310.c4552 | (PF01527) | ||||
| 199310.c4733 | + | ||||
| 199310.c4045 | + | ||||
| 199310.c2472 | (PF01527) | ||||
| 199310.c0256 | (PF01527) | ||||
| 199310.c1380 | + | ||||
| 199310.c3409 | + | ||||
| 199310.c0389 | (PF00696) | ||||
| 199310.c2276 | (PF05708) | ||||
| 199310.c0128 | + | ||||
| 199310.c0621 | + | ||||
| 199310.c1715 | + | ||||
| 199310.c2447 | + | ||||
| 199310.c3659 | (PF01527) | ||||
| 199310.c4533 | + | ||||
| 199310.c2053 | + | ||||
| 199310.c3503 | (PF01116) | ||||
| 199310.c0286 | + | ||||
| 199310.c4990 | (PF00696) | ||||
| 199310.c1656 | (PF05524) | ||||
| 199310.c3894 | (PF01116) | ||||
| 199310.c4663 | + | ||||
| 199310.c3874 | (PF03222) | ||||
| 199310.c0631 | (PF02615) | ||||
| 199310.c3872 | (PF01228) | ||||
| 199310.c4527 | + | ||||
| 199310.c5036 | (PF00549) | ||||
| 199310.c5038 | (PF00939) | ||||
| 199310.c5039 | (PF02615) | ||||
| 199310.c5213 | (PF13276) | ||||
| 199310.c5214 | (PF01527) | ||||
| 199310.c4453 | (PF01501) | ||||
| 199310.c4452 | (PF01501) | ||||
| 199310.c4450 | (PF01501) | ||||
| 199310.c3883 | + | ||||
| 199310.c3452 | (PF00696) | ||||
| 199310.c0354 | (PF01527) | ||||
| 199310.c0350 | (PF03797) | ||||
| 199310.c1225 | (PF01527) | ||||
| 199310.c4086 | + | ||||
| 199310.c4088 | + | ||||
| 199310.c1619 | (PF03797) | ||||
| 199310.c4504 | (PF03400) | ||||
| 199310.c4507 | (PF13276) | ||||
| 199310.c5272 | + | ||||
| 199310.c5274 | (PF03738) | ||||
| 199310.c4659 | + | ||||
| 199310.c4893 | (PF00696) | ||||
| 199310.c5461 | + | ||||
| 199310.c4090 | + | ||||
| 199310.c0885 | (PF02615) | ||||
| 199310.c2951 | (PF05524) | ||||
| 199310.c4451 | (PF06176) | ||||
| 199310.c3940 | + | ||||
| 199310.c4001 | + | ||||
| 199310.c2549 | + | ||||
| 199310.c2557 | + | ||||
| 199310.c1168 | (PF03400) | ||||
| 199310.c5258 | + | ||||
| 199310.c1572 | (PF01343) | ||||
| 199310.c0954 | + | ||||
| 199310.c3784 | (PF03738) | ||||
| 199310.c0318 | + | ||||
| 199310.c5064 | + | ||||
| 199310.c3560 | (PF01527) | ||||
| 199310.c0138 | (PF01527) | ||||
| 199310.c0139 | (PF13276) | ||||
| 199310.c4330 | (PF01204) | ||||
| 199310.c0046 | + | ||||
| 199310.c2177 | (PF01116) | ||||
| 199310.c2775 | (PF03797) | ||||
| 199310.c3575 | (PF13276) | ||||
| 199310.c3577 | (PF01527) | ||||
| 199310.c3576 | (PF01527) | ||||
| 199310.c4498 | (PF03400) | ||||
| 199310.c0232 | (PF13276) | ||||
| 199310.c5349 | (PF00696) | ||||
| 199310.c1637 | + | ||||
| 199310.c1553 | (PF13276) | ||||
| 199310.c1552 | (PF01527) | ||||
| 199310.c3225 | + | ||||
| 199310.c0441 | (PF00549) | ||||
| 199310.c3580 | + | ||||
| 199310.c0597 | + | ||||
| 199310.c2424 | (PF08242) | ||||
| 199310.c0200 | + | ||||
| 199310.c0207 | (PF00696) | ||||
| 199310.c5429 | + | ||||
| 199310.c4918 | (PF00696) | ||||
| 199310.c0119 | (PF13276) | ||||
| 199310.c1520 | (PF01527) | ||||
| 199310.c1521 | (PF13276) | ||||
| 199310.c4862 | + | ||||
| 199310.c3596 | (PF01527) | ||||
| 199310.c3595 | (PF13276) | ||||
| 199310.c3753 | (PF02615) | ||||
| 199310.c4906 | (PF05524) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.0 (0/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.0 (8/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.0 (0/10 KEGG proteins)
Estimated copy number = 1.0 (8/8 KEGG proteins)
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Contact
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- +43 1 4277 876681
- contact.cube@univie.ac.at
