Effective results for Labrenzia alexandrii DFL-11 (eggnog40)
Summary
Number of putative secreted proteins: 244
- Predicted by T4SEpre: 122
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 141 proteins (7 high, 134 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 244592.SADFL11_3137 | + | (PF12974) | ER | ||
| 244592.SADFL11_2127 | + | (PF13502) | ER | ||
| 244592.SADFL11_505 | (PF03480) | ER | |||
| 244592.SADFL11_4932 | + | mitochondrial; (mitochondrial) | |||
| 244592.SADFL11_2841 | (PF00497) | ER | |||
| 244592.SADFL11_2192 | + | mitochondrial | |||
| 244592.SADFL11_3156 | (PF00497) | ER | |||
| 244592.SADFL11_377 | + | ER | |||
| 244592.SADFL11_1714 | (PF03480) | ER | |||
| 244592.SADFL11_2362 | (PF00497) | ER | |||
| 244592.SADFL11_3379 | (PF16350) | ER | |||
| 244592.SADFL11_2764 | (PF00497) | ER | |||
| 244592.SADFL11_2086 | + | ER | |||
| 244592.SADFL11_3564 | + | (mitochondrial) | |||
| 244592.SADFL11_1524 | (PF00497) | (ER) | |||
| 244592.SADFL11_3821 | (PF08022) | ER | |||
| 244592.SADFL11_2376 | (PF03480) | ER; (ER) | |||
| 244592.SADFL11_3363 | + | ER | |||
| 244592.SADFL11_4743 | (PF00497) | ER | |||
| 244592.SADFL11_3288 | (PF00497) | ER; (ER) | |||
| 244592.SADFL11_4927 | (PF00497) | ER | |||
| 244592.SADFL11_2180 | (PF03480) | mitochondrial | |||
| 244592.SADFL11_5291 | (PF12974) | ER | |||
| 244592.SADFL11_3612 | + | ER | |||
| 244592.SADFL11_1109 | (PF00497) | ER | |||
| 244592.SADFL11_2988 | (PF00497) | (ER) | |||
| 244592.SADFL11_3675 | + | mitochondrial | |||
| 244592.SADFL11_4758 | (PF00497) | ER | |||
| 244592.SADFL11_4347 | (PF00497) | ER | |||
| 244592.SADFL11_3581 | + | ER | |||
| 244592.SADFL11_1472 | (PF00497) | ER | |||
| 244592.SADFL11_4516 | (PF03480) | mitochondrial | |||
| 244592.SADFL11_2759 | (PF00497) | mitochondrial | |||
| 244592.SADFL11_1267 | (PF09731) | (ER); ER | |||
| 244592.SADFL11_1249 | + | ER | |||
| 244592.SADFL11_249 | (PF00497) | ER | |||
| 244592.SADFL11_60 | (PF12974) | ER | |||
| 244592.SADFL11_3635 | + | ER | |||
| 244592.SADFL11_3929 | + | ER | |||
| 244592.SADFL11_3347 | + | (mitochondrial) | |||
| 244592.SADFL11_4356 | (PF00497) | ER; (ER) | |||
| 244592.SADFL11_2206 | (PF00497) | ER | |||
| 244592.SADFL11_3251 | + | ER | |||
| 244592.SADFL11_796 | + | ER | |||
| 244592.SADFL11_872 | (PF03480) | (mitochondrial); (plastid) | |||
| 244592.SADFL11_4216 | (PF13502) | ER | |||
| 244592.SADFL11_1307 | (PF00497) | ER | |||
| 244592.SADFL11_5168 | (PF00497) | ER; (ER) | |||
| 244592.SADFL11_5163 | (PF13502) | ER | |||
| 244592.SADFL11_911 | + | ER | |||
| 244592.SADFL11_645 | (PF00497) | (ER); (mitochondrial) | |||
| 244592.SADFL11_4966 | (PF12974) | ER | |||
| 244592.SADFL11_4969 | PF04832 | (mitochondrial) | |||
| 244592.SADFL11_263 | + | (ER) | |||
| 244592.SADFL11_4374 | + | ER | |||
| 244592.SADFL11_5150 | (PF03480) | mitochondrial; (mitochondrial) | |||
| 244592.SADFL11_2225 | (PF00497) | ER | |||
| 244592.SADFL11_3301 | PF04832 | ER | |||
| 244592.SADFL11_676 | + | ER | |||
| 244592.SADFL11_672 | + | (mitochondrial) | |||
| 244592.SADFL11_1657 | (PF03480) | ER | |||
| 244592.SADFL11_4971 | (PF03480) | ER | |||
| 244592.SADFL11_4155 | (PF14248) | ER | |||
| 244592.SADFL11_5336 | (PF13502) | ER | |||
| 244592.SADFL11_2825 | (PF03480) | ER | |||
| 244592.SADFL11_1174 | + | ER | |||
| 244592.SADFL11_3475 | (PF01847) | ER | |||
| 244592.SADFL11_5327 | (PF03480) | ER | |||
| 244592.SADFL11_4317 | (PF06455) | ER | |||
| 244592.SADFL11_5043 | (PF00497) | ER | |||
| 244592.SADFL11_2481 | + | ER | |||
| 244592.SADFL11_2489 | (PF00413) | ER | |||
| 244592.SADFL11_2064 | (PF03480) | ER | |||
| 244592.SADFL11_779 | PF10563 | ER | |||
| 244592.SADFL11_3444 | (PF16350) | ER; (ER) | |||
| 244592.SADFL11_949 | (PF00497) | ER | |||
| 244592.SADFL11_1972 | (PF03480) | ER | |||
| 244592.SADFL11_2474 | (PF12974) | ER | |||
| 244592.SADFL11_3410 | + | ER | |||
| 244592.SADFL11_1593 | (PF00497) | ER | |||
| 244592.SADFL11_2120 | + | ER; (mitochondrial) | |||
| 244592.SADFL11_2615 | (PF00497) | ER | |||
| 244592.SADFL11_630 | (PF00497) | (mitochondrial); (plastid) | |||
| 244592.SADFL11_2040 | (PF00497) | (ER); ER | |||
| 244592.SADFL11_4994 | (PF03480) | ER | |||
| 244592.SADFL11_1580 | + | ER | |||
| 244592.SADFL11_305 | (PF08022) | ER | |||
| 244592.SADFL11_4453 | (PF03480) | (ER) | |||
| 244592.SADFL11_3951 | + | ER | |||
| 244592.SADFL11_1774 | (PF14707) | ER; (ER) | |||
| 244592.SADFL11_1002 | (PF03480) | (mitochondrial) | |||
| 244592.SADFL11_4421 | + | ER; (ER) | |||
| 244592.SADFL11_157 | (PF00497) | (mitochondrial) | |||
| 244592.SADFL11_3559 | + | ER | |||
| 244592.SADFL11_2854 | + | (ER) | |||
| 244592.SADFL11_2399 | (PF03480) | (mitochondrial) | |||
| 244592.SADFL11_1633 | (PF00497) | (ER) | |||
| 244592.SADFL11_2418 | + | mitochondrial | |||
| 244592.SADFL11_3286 | (PF04325) | (mitochondrial) | |||
| 244592.SADFL11_3903 | + | plastid | |||
| 244592.SADFL11_4763 | (PF14248) | (ER) | |||
| 244592.SADFL11_302 | (PF00497) | (plastid) | |||
| 244592.SADFL11_3790 | (PF03480) | (mitochondrial) | |||
| 244592.SADFL11_2535 | + | (mitochondrial) | |||
| 244592.SADFL11_4791 | (PF00497) | (plastid) | |||
| 244592.SADFL11_933 | (PF00497) | (mitochondrial) | |||
| 244592.SADFL11_4622 | (PF00497) | plastid | |||
| 244592.SADFL11_4188 | (PF00497) | (mitochondrial) | |||
| 244592.SADFL11_4298 | (PF00497) | plastid | |||
| 244592.SADFL11_407 | + | (mitochondrial) | |||
| 244592.SADFL11_4076 | (PF00497) | ||||
| 244592.SADFL11_1613 | + | ||||
| 244592.SADFL11_3946 | + | ||||
| 244592.SADFL11_2444 | (PF01442) | ||||
| 244592.SADFL11_3323 | + | ||||
| 244592.SADFL11_367 | (PF00497) | ||||
| 244592.SADFL11_762 | + | ||||
| 244592.SADFL11_212 | + | ||||
| 244592.SADFL11_1496 | (PF00497) | ||||
| 244592.SADFL11_1491 | + | ||||
| 244592.SADFL11_1728 | (PF04862) | ||||
| 244592.SADFL11_2844 | (PF10013) | not used | |||
| 244592.SADFL11_2620 | + | ||||
| 244592.SADFL11_5015 | (PF01321) | ||||
| 244592.SADFL11_5013 | + | ||||
| 244592.SADFL11_2716 | + | ||||
| 244592.SADFL11_4491 | (PF03480) | ||||
| 244592.SADFL11_4725 | + | ||||
| 244592.SADFL11_3386 | + | ||||
| 244592.SADFL11_4133 | PF14700 | ||||
| 244592.SADFL11_2949 | + | ||||
| 244592.SADFL11_1147 | (PF00497) | ||||
| 244592.SADFL11_2893 | + | ||||
| 244592.SADFL11_4480 | (PF00497) | ||||
| 244592.SADFL11_2081 | (PF13502) | ||||
| 244592.SADFL11_3566 | + | ||||
| 244592.SADFL11_3562 | (PF03209) | ||||
| 244592.SADFL11_2371 | (PF06080) | ||||
| 244592.SADFL11_1280 | (PF00497) | ||||
| 244592.SADFL11_1197 | (PF01321) | ||||
| 244592.SADFL11_3281 | (PF06080) | ||||
| 244592.SADFL11_1738 | PF03492 | ||||
| 244592.SADFL11_1732 | + | ||||
| 244592.SADFL11_4818 | + | ||||
| 244592.SADFL11_3359 | (PF00497) | ||||
| 244592.SADFL11_1605 | + | ||||
| 244592.SADFL11_5296 | + | ||||
| 244592.SADFL11_5297 | + | ||||
| 244592.SADFL11_3610 | + | ||||
| 244592.SADFL11_4242 | (PF13023) | ||||
| 244592.SADFL11_3831 | + | ||||
| 244592.SADFL11_1189 | PF04832 | ||||
| 244592.SADFL11_2573 | + | ||||
| 244592.SADFL11_2571 | + | ||||
| 244592.SADFL11_4842 | + | ||||
| 244592.SADFL11_1987 | (PF01321) | ||||
| 244592.SADFL11_598 | + | ||||
| 244592.SADFL11_3589 | + | ||||
| 244592.SADFL11_2197 | (PF00497) | ||||
| 244592.SADFL11_4028 | (PF07958) | ||||
| 244592.SADFL11_2976 | + | ||||
| 244592.SADFL11_2975 | + | ||||
| 244592.SADFL11_1060 | (PF03480) | ||||
| 244592.SADFL11_3809 | (PF03480) | ||||
| 244592.SADFL11_1450 | (PF00413) | ||||
| 244592.SADFL11_1451 | + | ||||
| 244592.SADFL11_4764 | (PF13502) | ||||
| 244592.SADFL11_4311 | + | ||||
| 244592.SADFL11_1884 | + | ||||
| 244592.SADFL11_2215 | + | ||||
| 244592.SADFL11_4908 | + | ||||
| 244592.SADFL11_797 | (PF01321) | ||||
| 244592.SADFL11_1661 | (PF16350) | ||||
| 244592.SADFL11_3638 | + | ||||
| 244592.SADFL11_4162 | (PF03209) | ||||
| 244592.SADFL11_4250 | + | ||||
| 244592.SADFL11_3922 | (PF01321) | ||||
| 244592.SADFL11_1319 | + | ||||
| 244592.SADFL11_3103 | + | ||||
| 244592.SADFL11_791 | + | ||||
| 244592.SADFL11_3710 | + | ||||
| 244592.SADFL11_3792 | (PF16350) | ||||
| 244592.SADFL11_4368 | (PF00497) | ||||
| 244592.SADFL11_3078 | + | ||||
| 244592.SADFL11_4471 | (PF00497) | ||||
| 244592.SADFL11_1427 | + | ||||
| 244592.SADFL11_1428 | (PF00497) | ||||
| 244592.SADFL11_2830 | (PF16350) | ||||
| 244592.SADFL11_5309 | + | ||||
| 244592.SADFL11_4371 | (PF00497) | ||||
| 244592.SADFL11_2654 | + | not used | |||
| 244592.SADFL11_2741 | + | ||||
| 244592.SADFL11_4063 | (PF00497) | ||||
| 244592.SADFL11_1927 | + | ||||
| 244592.SADFL11_2312 | + | ||||
| 244592.SADFL11_3276 | (PF01321) | ||||
| 244592.SADFL11_4100 | + | ||||
| 244592.SADFL11_1781 | + | ||||
| 244592.SADFL11_1327 | (PF00413) | ||||
| 244592.SADFL11_3843 | + | ||||
| 244592.SADFL11_3418 | + | ||||
| 244592.SADFL11_4525 | (PF04325) | ||||
| 244592.SADFL11_544 | + | ||||
| 244592.SADFL11_3204 | (PF03480) | ||||
| 244592.SADFL11_2109 | (PF00497) | ||||
| 244592.SADFL11_3893 | + | ||||
| 244592.SADFL11_1333 | + | ||||
| 244592.SADFL11_2678 | + | ||||
| 244592.SADFL11_2244 | + | ||||
| 244592.SADFL11_4888 | (PF03480) | ||||
| 244592.SADFL11_2802 | (PF04325) | ||||
| 244592.SADFL11_1342 | + | ||||
| 244592.SADFL11_175 | (PF00497) | ||||
| 244592.SADFL11_2585 | (PF14707) | ||||
| 244592.SADFL11_426 | + | ||||
| 244592.SADFL11_2290 | + | ||||
| 244592.SADFL11_1627 | (PF14707) | ||||
| 244592.SADFL11_1754 | + | ||||
| 244592.SADFL11_2126 | + | ||||
| 244592.SADFL11_1211 | + | ||||
| 244592.SADFL11_4423 | (PF01321) | ||||
| 244592.SADFL11_1105 | (PF13023) | ||||
| 244592.SADFL11_4512 | PF03492 | ||||
| 244592.SADFL11_2266 | (PF12974) | ||||
| 244592.SADFL11_4605 | + | ||||
| 244592.SADFL11_811 | + | ||||
| 244592.SADFL11_3236 | (PF00497) | ||||
| 244592.SADFL11_3235 | + | ||||
| 244592.SADFL11_2289 | (PF04325) | not used | |||
| 244592.SADFL11_1741 | (PF01321) | ||||
| 244592.SADFL11_569 | (PF12974) | ||||
| 244592.SADFL11_2133 | (PF00497) | ||||
| 244592.SADFL11_4196 | (PF00940) | ||||
| 244592.SADFL11_650 | (PF00497) | ||||
| 244592.SADFL11_2863 | + | ||||
| 244592.SADFL11_1172 | + | ||||
| 244592.SADFL11_5103 | + | ||||
| 244592.SADFL11_2603 | (PF13023) | ||||
| 244592.SADFL11_4674 | + | ||||
| 244592.SADFL11_1954 | (PF03480) | ||||
| 244592.SADFL11_392 | (PF03480) | ||||
| 244592.SADFL11_399 | (PF16350) | ||||
| 244592.SADFL11_400 | + | ||||
| 244592.SADFL11_4308 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.6 (6/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.6 (6/10 KEGG proteins)
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