Metamenu

Effective results for Nitrosomonas sp. Is79A3 (eggnog40)

Summary

Number of putative secreted proteins: 151
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 151 proteins (76 high, 75 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
261292.Nit79A3_2991PF01609 PF05598(mitochondrial)
261292.Nit79A3_1261PF01609 PF05598(mitochondrial)
261292.Nit79A3_0608PF01609 PF05598(mitochondrial)
261292.Nit79A3_2890PF01609 PF05598(ER)
261292.Nit79A3_1199PF01609 PF05598(ER)
261292.Nit79A3_0303PF01609 PF05598(mitochondrial)
261292.Nit79A3_0159PF01609 PF05598(mitochondrial)
261292.Nit79A3_2686PF01609 PF05598(mitochondrial)
261292.Nit79A3_1817PF01609 PF05598(ER)
261292.Nit79A3_1027PF01609 PF05598(mitochondrial)
261292.Nit79A3_1770PF01609 PF05598(ER)
261292.Nit79A3_0177PF01609 PF05598(ER)
261292.Nit79A3_2003PF01609 PF05598(mitochondrial)
261292.Nit79A3_1167PF01609 PF05598(ER)
261292.Nit79A3_2274PF01609 PF05598(mitochondrial)
261292.Nit79A3_1757PF01609 PF05598(ER)
261292.Nit79A3_1617PF01609 PF05598(mitochondrial)
261292.Nit79A3_2296PF01609 PF05598(mitochondrial)
261292.Nit79A3_0734PF01609 PF05598(mitochondrial)
261292.Nit79A3_2284PF01609 PF05598(mitochondrial)
261292.Nit79A3_3010PF01609 PF05598(mitochondrial)
261292.Nit79A3_2744PF01609 PF05598(ER)
261292.Nit79A3_1240PF01609 PF05598(mitochondrial)
261292.Nit79A3_1095(PF13429)ER
261292.Nit79A3_3278PF01609 PF05598(mitochondrial)
261292.Nit79A3_2766PF13592 (PF13358) PF13551
261292.Nit79A3_0933PF01609(ER)
261292.Nit79A3_1693PF13592 (PF13358) PF13551
261292.Nit79A3_2047PF13592 (PF13358) PF13551
261292.Nit79A3_1541PF13436ER
261292.Nit79A3_2122(PF00194)ER
261292.Nit79A3_2843PF13592 (PF13358) PF13551
261292.Nit79A3_1766PF01609 PF05598(mitochondrial)
261292.Nit79A3_0216PF03092ER; (ER)
261292.Nit79A3_1807PF01609 PF05598(mitochondrial)
261292.Nit79A3_3448(PF13429)ER
261292.Nit79A3_1936PF13592 (PF13358) PF13551
261292.Nit79A3_0753PF13436ER
261292.Nit79A3_0401PF13592 (PF13358) PF13551
261292.Nit79A3_3519(PF02026)ER
261292.Nit79A3_1615PF13592 (PF13358) PF13551
261292.Nit79A3_1603PF00052ER
261292.Nit79A3_1284PF13592 (PF13358) PF13551
261292.Nit79A3_0262(PF04862)ER
261292.Nit79A3_3247PF13592 (PF13358) PF13551
261292.Nit79A3_3398PF05735ER
261292.Nit79A3_0338PF01609 PF05598(mitochondrial)
261292.Nit79A3_1363PF13592 (PF13358) PF13551
261292.Nit79A3_2659PF13436ER
261292.Nit79A3_1933PF01609(ER)
261292.Nit79A3_2503PF01609 PF05598
261292.Nit79A3_0335PF01609(ER)
261292.Nit79A3_2888PF01609(ER)
261292.Nit79A3_2953PF01609(ER)
261292.Nit79A3_2305PF01609(ER)
261292.Nit79A3_0155PF01609 PF05598
261292.Nit79A3_2842(PF12762)(mitochondrial)
261292.Nit79A3_0181PF01609(ER)
261292.Nit79A3_0400PF01609(ER)
261292.Nit79A3_2753PF01609(ER)
261292.Nit79A3_0288(PF13276)
261292.Nit79A3_0287(PF01527)
261292.Nit79A3_3353(PF01527)
261292.Nit79A3_2514PF05598
261292.Nit79A3_1282(PF13358)
261292.Nit79A3_1278(PF01527)
261292.Nit79A3_0051(PF01527)
261292.Nit79A3_0638PF01609
261292.Nit79A3_2500(PF01527)
261292.Nit79A3_2501(PF13276)
261292.Nit79A3_2767(PF12762)
261292.Nit79A3_1646PF01609
261292.Nit79A3_0934(PF01527)
261292.Nit79A3_3025(PF13276)
261292.Nit79A3_2970(PF12483)
261292.Nit79A3_1184(PF01527)
261292.Nit79A3_1183(PF13276)
261292.Nit79A3_1213(PF01527)
261292.Nit79A3_1851(PF01527)
261292.Nit79A3_1852(PF13276)
261292.Nit79A3_1876PF01609
261292.Nit79A3_1197PF01609
261292.Nit79A3_1208(PF13358)
261292.Nit79A3_1204(PF01527)
261292.Nit79A3_1207PF13592
261292.Nit79A3_0138(PF13358)
261292.Nit79A3_2313(PF13276)
261292.Nit79A3_1053(PF01527)
261292.Nit79A3_1052(PF13276)
261292.Nit79A3_1838(PF01527)
261292.Nit79A3_1837(PF13276)
261292.Nit79A3_0306(PF01527)
261292.Nit79A3_3548(PF01527)
261292.Nit79A3_2053(PF01163)
261292.Nit79A3_2059PF01609
261292.Nit79A3_1854PF08939
261292.Nit79A3_3425PF01609
261292.Nit79A3_1816PF13551
261292.Nit79A3_1763(PF01527)
261292.Nit79A3_1762(PF13358)
261292.Nit79A3_1761PF13592
261292.Nit79A3_2699(PF05189)
261292.Nit79A3_1375(PF14216)
261292.Nit79A3_2489(PF13276)
261292.Nit79A3_2717(PF01527)
261292.Nit79A3_2718(PF13276)
261292.Nit79A3_0765(PF01163)
261292.Nit79A3_0767(PF12762)
261292.Nit79A3_1589PF03092
261292.Nit79A3_1586PF01609
261292.Nit79A3_1343PF01609
261292.Nit79A3_1345(PF13276)
261292.Nit79A3_1344(PF01527)
261292.Nit79A3_3055PF01609
261292.Nit79A3_2905(PF14792)
261292.Nit79A3_2674(PF01527)
261292.Nit79A3_2277(PF01527)
261292.Nit79A3_2278(PF13276)
261292.Nit79A3_2490(PF01527)
261292.Nit79A3_2700PF04457
261292.Nit79A3_2701PF01609
261292.Nit79A3_2704(PF01527)
261292.Nit79A3_2649(PF01527)
261292.Nit79A3_2249PF05598
261292.Nit79A3_2730PF05598
261292.Nit79A3_1618(PF08357)
261292.Nit79A3_2294(PF13276)
261292.Nit79A3_2653(PF13276)
261292.Nit79A3_2650(PF13276)
261292.Nit79A3_2654(PF01527)
261292.Nit79A3_1116(PF12762)
261292.Nit79A3_1281PF13592
261292.Nit79A3_0462PF13592
261292.Nit79A3_0461(PF13358)
261292.Nit79A3_0261(PF13276)
261292.Nit79A3_0260(PF01527)
261292.Nit79A3_0267(PF13276)
261292.Nit79A3_0268(PF01527)
261292.Nit79A3_0659(PF13358)
261292.Nit79A3_1254(PF00101)
261292.Nit79A3_1244(PF01527)
261292.Nit79A3_0272(PF01527)
261292.Nit79A3_2133(PF00194)
261292.Nit79A3_3015(PF01527)
261292.Nit79A3_3236(PF00101)
261292.Nit79A3_2295(PF01527)
261292.Nit79A3_2747(PF01527)
261292.Nit79A3_1134(PF13276)
261292.Nit79A3_1135(PF01527)
261292.Nit79A3_1243(PF13276)
261292.Nit79A3_0660PF13592

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================