Metamenu

Effective results for Clostridium acetobutylicum ATCC 824 (eggnog40)

Summary

Number of putative secreted proteins: 141
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 41 eukaryotic-like domains, contained in 141 proteins (4 high, 137 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
272562.CA_C2514(PF10435) (PF13363)ER
272562.CA_C2822(PF12895) (PF13181)ER
272562.CA_C3279(PF12799) (PF02368)ER
272562.CA_C3275(PF12799) (PF02368)ER
272562.CA_C3274(PF12799) (PF02368)ER
272562.CA_C3272PF14580 (PF02368)ER
272562.CA_C2493(PF01477) (PF00882)ER
272562.CA_C3280(PF12799) (PF02368)(ER)
272562.CA_C3469(PF00150) (PF02368)ER
272562.CA_C0398(PF06013)(mitochondrial)
272562.CA_C0722(PF13787)ER
272562.CA_C0725(PF13787)ER
272562.CA_C2526(PF01242)(mitochondrial)
272562.CA_C2744(PF06541)ER
272562.CA_C1718(PF00625)(mitochondrial)
272562.CA_C0918(PF00150)ER
272562.CA_C2603(PF06541)ER
272562.CA_C2998(PF13181)ER
272562.CA_C1478(PF00163)mitochondrial
272562.CA_C2421(PF00150)ER
272562.CA_C3105(PF00163)mitochondrial
272562.CA_C3692(PF09394)ER
272562.CA_C0868(PF12698)(mitochondrial)
272562.CA_C0332(PF02156)ER
272562.CA_C1217(PF00625)(mitochondrial)
272562.CA_C0917(PF00759)ER
272562.CA_C3278(PF02368)ER
272562.CA_C0916(PF00759)ER
272562.CA_C0913(PF00759)ER
272562.CA_C3565(PF02368)ER
272562.CA_C0826(PF00150)ER
272562.CA_C0825(PF00150)ER
272562.CA_C1666(PF06541)ER
272562.CA_C3403(PF12698)mitochondrial
272562.CA_C2556(PF02156)ER
272562.CA_C0540(PF02156)ER
272562.CA_C1043(PF13181)(mitochondrial)
272562.CA_C3085(PF02368)ER
272562.CA_C3086(PF02368)ER
272562.CA_C2931(PF12698)mitochondrial
272562.CA_C2930(PF12698)mitochondrial
272562.CA_C0561(PF00759)ER
272562.CA_C0706(PF00150)ER
272562.CA_C2583(PF12698)mitochondrial
272562.CA_C2581(PF01242)(mitochondrial)
272562.CA_C2107(PF02368)ER
272562.CA_C0171(PF12698)mitochondrial
272562.CA_C0170(PF12698)ER
272562.CA_C0354PF06728ER
272562.CA_C1019(PF00882)(mitochondrial)
272562.CA_C0237(PF12698)(mitochondrial)
272562.CA_C0238(PF12698)mitochondrial
272562.CA_C3610(PF12698)mitochondrial
272562.CA_C3273(PF02368)ER
272562.CA_C1389(PF02368)ER
272562.CA_C1594(PF00163)(mitochondrial)
272562.CA_C0539(PF02156)ER
272562.CA_C0538(PF02156)(ER)
272562.CA_C0243(PF12698)mitochondrial; (mitochondrial)
272562.CA_C0416(PF12895) (PF13181)
272562.CA_C2776PF00688(plastid)
272562.CA_C3402(PF06500)(mitochondrial)
272562.CA_C3550(PF12698)(mitochondrial)
272562.CA_C0813(PF00882)(ER)
272562.CA_C2585(PF01242)(mitochondrial)
272562.CA_C3268(PF12698)(mitochondrial)
272562.CA_C0748(PF14512)
272562.CA_C0415(PF13181)
272562.CA_C0412(PF13181)
272562.CA_C0413(PF06013)
272562.CA_C0410(PF06013)
272562.CA_C0411(PF06013)
272562.CA_C3713(PF06013)
272562.CA_C3248(PF12646)
272562.CA_C2750(PF03063)
272562.CA_C0726(PF02502)
272562.CA_C1418(PF14512)
272562.CA_C3428(PF03063)
272562.CA_C1625PF06888
272562.CA_C0041(PF06013)
272562.CA_C0040(PF06013)
272562.CA_C0045(PF12895)
272562.CA_C0047(PF06013)
272562.CA_C3006(PF08367)
272562.CA_C3356(PF12681)
272562.CA_C2606(PF02502)
272562.CA_C2770(PF13906)
272562.CA_C1654(PF08367)
272562.CA_C0298(PF00625)
272562.CA_C0867(PF12698)
272562.CA_C0116(PF03063)
272562.CA_C0021(PF02403)
272562.CA_C2402(PF12895)
272562.CA_C2576(PF01242)
272562.CA_C2880(PF02502)
272562.CA_C1672(PF06777)
272562.CA_C1324(PF07892)
272562.CA_C2908(PF01633)
272562.CA_C0912(PF00150)
272562.CA_C0926(PF13181)
272562.CA_C0925(PF13181)
272562.CA_C0922(PF06013)
272562.CA_C0928(PF06013)
272562.CA_C0324(PF13181)
272562.CA_C3308(PF13181)
272562.CA_C2367(PF02368)
272562.CA_C3416(PF12638)
272562.CA_C1064(PF13181)
272562.CA_C1067(PF13181)
272562.CA_C1063(PF13181)
272562.CA_C1195(PF12826)
272562.CA_C0552(PF02368)
272562.CA_C0551(PF02368)
272562.CA_C0957(PF13181)
272562.CA_C3312(PF03031)
272562.CA_C2953(PF02502)
272562.CA_C2954(PF02502)
272562.CA_C0013(PF07892)
272562.CA_C0547(PF12681)
272562.CA_C0017(PF02403)
272562.CA_C0793(PF06101)
272562.CA_C3084(PF13181)
272562.CA_C2336(PF13181)
272562.CA_C2592(PF01242)
272562.CA_C1563(PF00150)
272562.CA_C3187(PF12826)
272562.CA_C3529(PF14022)
272562.CA_C3528(PF14022)
272562.CA_C0778(PF12513)
272562.CA_C3624(PF01242)
272562.CA_C3449(PF13181)
272562.CA_C2467(PF09394)
272562.CA_C0508(PF12826)
272562.CA_C0186(PF13181)
272562.CA_C2906(PF01633)
272562.CA_C2673(PF12826)
272562.CA_C2498(PF03063)
272562.CA_C2490(PF13181)
272562.CA_C0404(PF13181)
272562.CA_C0242(PF12698)
272562.CA_C3515(PF06500)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================