Effective results for Rickettsia prowazekii str. Madrid E (eggnog40)

Summary

Number of putative secreted proteins: 44
- Predicted by T4SEpre: 40
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 9 proteins (7 high, 2 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
272947.RP874+(mitochondrial)
272947.RP739PF03219mitochondrial; (mitochondrial)
272947.RP837(PF03959)ER
272947.RP305(PF05637)ER
272947.RP864+ER
272947.RP269+ER
272947.RP413+ER
272947.RP224+ER
272947.RP458+ER
272947.RP123+ER
272947.RP688+(mitochondrial)
272947.RP198+ER
272947.RP395+ER
272947.RP038+ER
272947.RP771+ER
272947.RP051+(ER)
272947.RP648+(mitochondrial)
272947.RP538+(mitochondrial)
272947.RP803+
272947.RP377PF03219
272947.RP374PF01369
272947.RP277+
272947.RP017+
272947.RP083+
272947.RP462+
272947.RP303+
272947.RP740+
272947.RP820+
272947.RP454+
272947.RP498+
272947.RP564+
272947.RP323+
272947.RP102+
272947.RP419+
272947.RP617+
272947.RP028+
272947.RP021PF02326
272947.RP153+
272947.RP200+
272947.RP788+
272947.RP477PF03219
272947.RP504+
272947.RP500PF03219
272947.RP053PF03219

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.5 (15/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================