Effective results for Arthrobacter aurescens TC1 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 30 proteins (0 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
290340.AAur_0948				(PF00251) (PF08244)	(ER)
290340.AAur_2831				(PF08570)	ER
290340.AAur_0107				(PF08570)	ER
290340.AAur_0311				(PF03147) (PF01409)
290340.AAur_1401				(PF00251) (PF08244)
290340.AAur_0693				(PF00251) (PF08244)
290340.AAur_0579				(PF02728) (PF01179)
290340.AAur_1378				(PF02728) (PF01179)
290340.AAur_1959				(PF00251) (PF08244)
290340.AAur_1958				(PF00251) (PF08244)
290340.AAur_1462				(PF13683)
290340.AAur_2325				(PF08713)
290340.AAur_1899				(PF13816)
290340.AAur_3077				(PF08713)
290340.AAur_3299				(PF13683)
290340.AAur_1740				(PF13683)
290340.AAur_0017				(PF00643)
290340.AAur_3119				(PF00251)
290340.AAur_3113				(PF13683)
290340.AAur_3110				(PF13683)
290340.AAur_2403				(PF08713)
290340.AAur_1624				(PF03147)
290340.AAur_1623				(PF01409)
290340.AAur_0483				(PF04961)
290340.AAur_1383				(PF13683)
290340.AAur_0947				(PF00251)
290340.AAur_3152				(PF13683)
290340.AAur_0982				(PF04961)
290340.AAur_0457				(PF08713)
290340.AAur_3173				(PF13683)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================