Metamenu

Effective results for Ruegeria sp. TM1040 (eggnog40)

Summary

Number of putative secreted proteins: 21
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 21 proteins (1 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
292414.TM1040_1773(PF13704)(mitochondrial); mitochondrial
292414.TM1040_1831(PF05990)(ER)
292414.TM1040_2852(PF05990)ER
292414.TM1040_0017(PF13704)mitochondrial
292414.TM1040_0018(PF13704)mitochondrial
292414.TM1040_0243(PF11977)ER
292414.TM1040_0141(PF11563)
292414.TM1040_1977(PF11563)
292414.TM1040_2647(PF11563)
292414.TM1040_1774(PF13704)
292414.TM1040_1771(PF13704)
292414.TM1040_0963(PF11563)
292414.TM1040_1808(PF13704)
292414.TM1040_1939(PF05990)
292414.TM1040_2690(PF01847)
292414.TM1040_1818PF11781
292414.TM1040_2488(PF02485)
292414.TM1040_1488(PF06119)
292414.TM1040_0231(PF13704)
292414.TM1040_0019(PF02485)
292414.TM1040_2084(PF09458)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================