Effective results for Nodularia spumigena CCY9414 (eggnog40)
Summary
Number of putative secreted proteins: 500
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 158 eukaryotic-like domains, contained in 500 proteins (51 high, 449 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 313624.N9414_18328 | (PF13414) (PF00515) | ER | |||
| 313624.N9414_11007 | (PF00515) (PF13414) | ER | |||
| 313624.N9414_10942 | (PF00515) (PF13414) | ER | |||
| 313624.N9414_09076 | (PF16639) (PF01333) | (mitochondrial) | |||
| 313624.N9414_03930 | (PF12323) (PF07282) | (mitochondrial) | |||
| 313624.N9414_18730 | PF00862 (PF00534) | ER | |||
| 313624.N9414_09311 | (PF01169) | ER | |||
| 313624.N9414_19777 | (PF06514) | ER | |||
| 313624.N9414_18253 | (PF07466) | ER | |||
| 313624.N9414_02029 | (PF13414) | ER | |||
| 313624.N9414_05459 | (PF00534) | (ER) | |||
| 313624.N9414_22408 | (PF00805) | ER | |||
| 313624.N9414_05110 | (PF13414) | ER | |||
| 313624.N9414_11254 | (PF00805) | ER | |||
| 313624.N9414_17628 | (PF00534) | (ER) | |||
| 313624.N9414_02491 | (PF01737) | ER | |||
| 313624.N9414_16142 | (PF00534) | ER | |||
| 313624.N9414_12483 | (PF07444) | ER | |||
| 313624.N9414_12643 | (PF03040) | ER | |||
| 313624.N9414_17857 | (PF01716) | ER | |||
| 313624.N9414_08425 | (PF02507) | ER | |||
| 313624.N9414_23248 | (PF00094) | ER | |||
| 313624.N9414_00335 | (PF07466) | (ER); ER | |||
| 313624.N9414_20690 | (PF13414) | ER | |||
| 313624.N9414_11914 | (PF00534) | ER | |||
| 313624.N9414_10248 | (PF13326) | ER | |||
| 313624.N9414_05259 | (PF01094) | ER | |||
| 313624.N9414_12753 | (PF12323) (PF07282) | (mitochondrial) | |||
| 313624.N9414_11047 | (PF05154) | mitochondrial | |||
| 313624.N9414_22598 | PF05419 | (mitochondrial) | |||
| 313624.N9414_17268 | (PF12159) | ER | |||
| 313624.N9414_19924 | (PF00218) | (mitochondrial) | |||
| 313624.N9414_08450 | (PF04278) | ER | |||
| 313624.N9414_21581 | (PF00805) | (mitochondrial) | |||
| 313624.N9414_17892 | (PF07282) | (mitochondrial) | |||
| 313624.N9414_05989 | (PF00805) | ER | |||
| 313624.N9414_07049 | (PF00534) | (ER) | |||
| 313624.N9414_05994 | (PF00805) | mitochondrial; (mitochondrial) | |||
| 313624.N9414_14017 | PF05419 | mitochondrial | |||
| 313624.N9414_08018 | (PF00534) | (ER) | |||
| 313624.N9414_06544 | (PF16166) | (ER) | |||
| 313624.N9414_07841 | (PF12323) | (mitochondrial) | |||
| 313624.N9414_09381 | (PF01789) | ER | |||
| 313624.N9414_01275 | (PF13355) | ER | |||
| 313624.N9414_08038 | (PF00534) | (ER) | |||
| 313624.N9414_00710 | (PF02163) | ER | |||
| 313624.N9414_23018 | (PF00805) | ER | |||
| 313624.N9414_05719 | (PF00805) | ER | |||
| 313624.N9414_20940 | (PF06472) | mitochondrial | |||
| 313624.N9414_18168 | (PF00534) | (ER) | |||
| 313624.N9414_09486 | (PF11805) | ER | |||
| 313624.N9414_11759 | PF05419 | ER | |||
| 313624.N9414_09931 | (PF11016) | ER | |||
| 313624.N9414_13917 | PF12569 | mitochondrial | |||
| 313624.N9414_21881 | (PF10716) | ER | |||
| 313624.N9414_21886 | (PF11460) | ER | |||
| 313624.N9414_20575 | (PF02163) | ER; (ER) | |||
| 313624.N9414_10368 | (PF13414) | ER | |||
| 313624.N9414_11694 | (PF02163) | ER | |||
| 313624.N9414_10912 | (PF04839) | ER; (ER) | |||
| 313624.N9414_08525 | (PF00101) | (mitochondrial) | |||
| 313624.N9414_05804 | (PF07927) | (mitochondrial) | |||
| 313624.N9414_21988 | (PF00805) | ER | |||
| 313624.N9414_04510 | (PF00421) | (mitochondrial) | |||
| 313624.N9414_09826 | (PF11152) | ER; (ER) | |||
| 313624.N9414_00750 | (PF12046) | ER | |||
| 313624.N9414_21190 | (PF02163) | ER | |||
| 313624.N9414_22863 | (PF01025) | ER | |||
| 313624.N9414_08615 | (PF00534) | ER | |||
| 313624.N9414_07998 | (PF00852) | (mitochondrial) | |||
| 313624.N9414_22308 | (PF13414) | ER | |||
| 313624.N9414_17483 | (PF01169) | ER; (ER) | |||
| 313624.N9414_10977 | (PF00805) | ER | |||
| 313624.N9414_22898 | (PF00145) | (ER) | |||
| 313624.N9414_04400 | (PF01947) | (plastid) | |||
| 313624.N9414_11534 | (PF00421) (PF02605) | ||||
| 313624.N9414_22133 | (PF13565) | (mitochondrial) | |||
| 313624.N9414_18715 | (PF13414) | (plastid) | |||
| 313624.N9414_08729 | (PF12323) (PF07282) | ||||
| 313624.N9414_07524 | (PF00515) (PF13414) | not used | |||
| 313624.N9414_20250 | (PF06298) | ER; not used | |||
| 313624.N9414_15967 | (PF05154) | (ER) | |||
| 313624.N9414_04420 | (PF07444) | plastid | |||
| 313624.N9414_10393 | (PF07282) | (plastid) | |||
| 313624.N9414_09316 | (PF12323) (PF07282) | ||||
| 313624.N9414_01552 | (PF00534) | (ER) | |||
| 313624.N9414_03026 | (PF12323) (PF07282) | ||||
| 313624.N9414_12133 | (PF00515) (PF13414) | ||||
| 313624.N9414_22688 | PF05419 | (mitochondrial) | |||
| 313624.N9414_18885 | PF01701 | ER; not used | |||
| 313624.N9414_01949 | (PF13565) | (mitochondrial) | |||
| 313624.N9414_23343 | (PF12323) | mitochondrial; not used | |||
| 313624.N9414_22218 | (PF13565) | (mitochondrial) | |||
| 313624.N9414_18218 | (PF00515) (PF13414) | ||||
| 313624.N9414_19107 | (PF13414) | (mitochondrial) | |||
| 313624.N9414_17068 | (PF04755) | (mitochondrial) | |||
| 313624.N9414_01080 | (PF13565) | (mitochondrial) | |||
| 313624.N9414_23568 | PF00862 (PF00534) | ||||
| 313624.N9414_05349 | (PF12323) (PF07282) | ||||
| 313624.N9414_08919 | (PF12600) | (plastid) | |||
| 313624.N9414_08660 | (PF00534) | (ER) | |||
| 313624.N9414_01195 | (PF13565) | (mitochondrial) | |||
| 313624.N9414_19152 | (PF01761) | (plastid) | |||
| 313624.N9414_17073 | (PF02427) | (mitochondrial) | |||
| 313624.N9414_02726 | (PF00145) | (ER) | |||
| 313624.N9414_17922 | (PF00284) (PF00283) | ||||
| 313624.N9414_18368 | (PF13565) | (mitochondrial) | |||
| 313624.N9414_08028 | (PF00534) | (ER) | |||
| 313624.N9414_02241 | (PF07282) | (mitochondrial) | |||
| 313624.N9414_17912 | (PF01788) | ER; not used | |||
| 313624.N9414_23808 | (PF13565) | (mitochondrial) | |||
| 313624.N9414_15180 | (PF00515) (PF13414) | ||||
| 313624.N9414_13590 | (PF00226) (PF00515) | ||||
| 313624.N9414_01460 | (PF14234) | (ER) | |||
| 313624.N9414_22063 | (PF06206) | (ER) | |||
| 313624.N9414_14473 | PF00862 (PF00534) | ||||
| 313624.N9414_17373 | (PF07927) | (mitochondrial) | |||
| 313624.N9414_23108 | (PF05685) | (ER) | |||
| 313624.N9414_03668 | (PF13355) (PF00226) | ||||
| 313624.N9414_00180 | (PF00805) (PF00226) | ||||
| 313624.N9414_11309 | (PF13613) | ||||
| 313624.N9414_00985 | (PF00534) | ||||
| 313624.N9414_14705 | (PF00223) | ||||
| 313624.N9414_07484 | (PF06838) | not used | |||
| 313624.N9414_00960 | (PF00534) | ||||
| 313624.N9414_14448 | PF14279 | not used | |||
| 313624.N9414_09251 | PF05419 | ||||
| 313624.N9414_12668 | (PF05685) | ||||
| 313624.N9414_16052 | PF14279 | ||||
| 313624.N9414_07696 | (PF08242) | ||||
| 313624.N9414_19727 | (PF02985) | ||||
| 313624.N9414_09756 | (PF00805) | ||||
| 313624.N9414_11082 | (PF00226) | ||||
| 313624.N9414_10628 | (PF00534) | ||||
| 313624.N9414_11087 | (PF14771) | not used | |||
| 313624.N9414_10623 | (PF00534) | not used | |||
| 313624.N9414_16564 | (PF00145) | ||||
| 313624.N9414_18413 | (PF00515) | not used | |||
| 313624.N9414_12843 | (PF03412) | ||||
| 313624.N9414_18418 | (PF13414) | ||||
| 313624.N9414_13535 | (PF05685) | ||||
| 313624.N9414_09371 | (PF07282) | ||||
| 313624.N9414_19657 | (PF05685) | ||||
| 313624.N9414_11664 | (PF08854) | ||||
| 313624.N9414_00775 | (PF04423) | ||||
| 313624.N9414_09926 | (PF12095) | ||||
| 313624.N9414_21821 | (PF05421) | ||||
| 313624.N9414_03683 | (PF10063) | ||||
| 313624.N9414_20480 | (PF00707) | ||||
| 313624.N9414_20795 | (PF00737) | ||||
| 313624.N9414_20790 | (PF02468) | not used | |||
| 313624.N9414_19517 | (PF07282) | ||||
| 313624.N9414_20660 | (PF05685) | ||||
| 313624.N9414_23468 | (PF12617) | ||||
| 313624.N9414_13018 | (PF00534) | ||||
| 313624.N9414_16399 | PF05419 | ||||
| 313624.N9414_03855 | (PF00124) | ||||
| 313624.N9414_14710 | (PF00223) | ||||
| 313624.N9414_17021 | (PF02130) | ||||
| 313624.N9414_14388 | (PF04983) | ||||
| 313624.N9414_10438 | (PF03982) | ||||
| 313624.N9414_14383 | (PF04983) | ||||
| 313624.N9414_01215 | (PF01555) | ||||
| 313624.N9414_07686 | (PF08242) | ||||
| 313624.N9414_11529 | (PF00421) | ||||
| 313624.N9414_19869 | (PF13613) | ||||
| 313624.N9414_11097 | (PF00226) | ||||
| 313624.N9414_09786 | (PF05542) | ||||
| 313624.N9414_09306 | (PF01169) | ||||
| 313624.N9414_08560 | (PF13613) | ||||
| 313624.N9414_04245 | (PF00534) | ||||
| 313624.N9414_01360 | (PF00145) | ||||
| 313624.N9414_08899 | (PF00534) | not used | |||
| 313624.N9414_08415 | (PF02605) | ||||
| 313624.N9414_10937 | (PF07282) | not used | |||
| 313624.N9414_04930 | (PF05154) | ||||
| 313624.N9414_11289 | (PF02130) | ||||
| 313624.N9414_20495 | (PF13359) | ||||
| 313624.N9414_20490 | (PF13613) | ||||
| 313624.N9414_03146 | (PF00515) | ||||
| 313624.N9414_19894 | (PF11282) | ||||
| 313624.N9414_17448 | (PF13359) | ||||
| 313624.N9414_13028 | PF06799 | ||||
| 313624.N9414_11329 | (PF05685) | ||||
| 313624.N9414_05065 | PF00504 | ||||
| 313624.N9414_16926 | (PF10571) | ||||
| 313624.N9414_20925 | (PF06999) | ||||
| 313624.N9414_10738 | (PF00226) | ||||
| 313624.N9414_18098 | (PF03652) | ||||
| 313624.N9414_04330 | PF05419 | ||||
| 313624.N9414_10648 | (PF05685) | ||||
| 313624.N9414_07786 | (PF05685) | ||||
| 313624.N9414_09791 | PF14279 | ||||
| 313624.N9414_08959 | (PF00145) | ||||
| 313624.N9414_08555 | (PF13359) | ||||
| 313624.N9414_13430 | (PF05685) | ||||
| 313624.N9414_09956 | (PF07927) | ||||
| 313624.N9414_13857 | PF14279 | ||||
| 313624.N9414_08420 | PF01701 | not used | |||
| 313624.N9414_16494 | PF05419 | ||||
| 313624.N9414_11112 | (PF01555) | ||||
| 313624.N9414_17633 | (PF00534) | ||||
| 313624.N9414_01557 | (PF05685) | ||||
| 313624.N9414_20310 | (PF08847) | ||||
| 313624.N9414_15457 | (PF11833) | ||||
| 313624.N9414_23793 | PF14279 | ||||
| 313624.N9414_02771 | (PF00534) | ||||
| 313624.N9414_17453 | (PF00805) | ||||
| 313624.N9414_07099 | (PF03412) | ||||
| 313624.N9414_17046 | (PF13359) | ||||
| 313624.N9414_17041 | (PF13613) | ||||
| 313624.N9414_14263 | (PF00534) | ||||
| 313624.N9414_13033 | PF06799 | not used | |||
| 313624.N9414_20865 | (PF08242) | ||||
| 313624.N9414_20860 | (PF08242) | ||||
| 313624.N9414_22208 | (PF07927) | ||||
| 313624.N9414_02676 | (PF11909) | ||||
| 313624.N9414_09096 | (PF13359) | ||||
| 313624.N9414_09091 | (PF13613) | ||||
| 313624.N9414_19847 | (PF05685) | ||||
| 313624.N9414_11077 | (PF11341) | ||||
| 313624.N9414_07791 | PF05419 | ||||
| 313624.N9414_16559 | (PF06485) | ||||
| 313624.N9414_18263 | (PF00534) | ||||
| 313624.N9414_09896 | (PF11998) | ||||
| 313624.N9414_17732 | (PF09265) | ||||
| 313624.N9414_08128 | (PF07282) | ||||
| 313624.N9414_20300 | (PF12452) | ||||
| 313624.N9414_15767 | (PF11360) | ||||
| 313624.N9414_06064 | (PF03055) | ||||
| 313624.N9414_04910 | (PF05685) | ||||
| 313624.N9414_05464 | (PF00534) | ||||
| 313624.N9414_02761 | (PF03055) | ||||
| 313624.N9414_02169 | (PF01555) | ||||
| 313624.N9414_23348 | (PF07282) | not used | |||
| 313624.N9414_22323 | PF00504 | not used | |||
| 313624.N9414_09151 | (PF00805) | ||||
| 313624.N9414_14570 | PF00504 | ||||
| 313624.N9414_00855 | PF03742 | not used | |||
| 313624.N9414_00320 | (PF11947) | ||||
| 313624.N9414_05250 | (PF03055) | ||||
| 313624.N9414_15297 | (PF07282) | ||||
| 313624.N9414_06694 | (PF11623) | ||||
| 313624.N9414_07671 | (PF06472) | ||||
| 313624.N9414_00680 | (PF12204) | not used | |||
| 313624.N9414_17613 | (PF05685) | ||||
| 313624.N9414_17618 | (PF05685) | ||||
| 313624.N9414_03558 | (PF02672) | ||||
| 313624.N9414_00590 | (PF10664) | ||||
| 313624.N9414_07489 | (PF06838) | not used | |||
| 313624.N9414_00665 | (PF12204) | ||||
| 313624.N9414_02196 | (PF08041) | not used | |||
| 313624.N9414_02686 | (PF11371) | ||||
| 313624.N9414_16222 | (PF08417) | ||||
| 313624.N9414_11904 | (PF06206) | ||||
| 313624.N9414_22913 | (PF05685) | ||||
| 313624.N9414_03815 | (PF03412) | ||||
| 313624.N9414_22593 | (PF06472) | ||||
| 313624.N9414_11839 | PF10229 | ||||
| 313624.N9414_22353 | (PF05685) | ||||
| 313624.N9414_05634 | (PF05685) | ||||
| 313624.N9414_17083 | (PF11910) | ||||
| 313624.N9414_00265 | (PF05151) | not used | |||
| 313624.N9414_02986 | (PF00805) | ||||
| 313624.N9414_18338 | (PF00707) | ||||
| 313624.N9414_08103 | (PF01761) | ||||
| 313624.N9414_19002 | PF14279 | ||||
| 313624.N9414_15977 | (PF11210) | ||||
| 313624.N9414_01617 | (PF11317) | ||||
| 313624.N9414_20215 | (PF05685) | ||||
| 313624.N9414_07479 | (PF13366) | ||||
| 313624.N9414_15877 | (PF05685) | ||||
| 313624.N9414_13962 | (PF13565) | ||||
| 313624.N9414_04220 | (PF14159) | ||||
| 313624.N9414_07299 | (PF02531) | ||||
| 313624.N9414_04750 | (PF11965) | ||||
| 313624.N9414_03803 | (PF00639) | ||||
| 313624.N9414_04755 | (PF05685) | ||||
| 313624.N9414_15812 | (PF05685) | ||||
| 313624.N9414_23563 | (PF05685) | ||||
| 313624.N9414_17273 | (PF10693) | ||||
| 313624.N9414_22163 | (PF13359) | ||||
| 313624.N9414_23368 | (PF07282) | ||||
| 313624.N9414_19959 | (PF09366) | ||||
| 313624.N9414_21290 | (PF01555) | ||||
| 313624.N9414_10463 | (PF04455) | ||||
| 313624.N9414_12573 | (PF13366) | ||||
| 313624.N9414_13080 | (PF00534) | not used | |||
| 313624.N9414_22223 | (PF02672) | ||||
| 313624.N9414_07908 | (PF13613) | ||||
| 313624.N9414_08260 | (PF05685) | ||||
| 313624.N9414_08665 | (PF00534) | ||||
| 313624.N9414_07616 | (PF05685) | ||||
| 313624.N9414_00025 | (PF00534) | ||||
| 313624.N9414_17675 | PF11378 | ||||
| 313624.N9414_16524 | (PF04755) | ||||
| 313624.N9414_07721 | PF00504 | ||||
| 313624.N9414_04965 | (PF07282) | ||||
| 313624.N9414_03573 | (PF02985) | ||||
| 313624.N9414_07464 | (PF00226) | ||||
| 313624.N9414_10852 | (PF00805) | ||||
| 313624.N9414_13957 | (PF03412) | ||||
| 313624.N9414_16117 | (PF06485) | ||||
| 313624.N9414_03111 | PF14279 | ||||
| 313624.N9414_16112 | (PF04481) | ||||
| 313624.N9414_20530 | (PF06202) | ||||
| 313624.N9414_23623 | (PF03647) | ||||
| 313624.N9414_06184 | (PF11347) | ||||
| 313624.N9414_17413 | (PF02529) | not used | |||
| 313624.N9414_02221 | (PF07282) | not used | |||
| 313624.N9414_19502 | (PF03652) | ||||
| 313624.N9414_07289 | (PF06202) | ||||
| 313624.N9414_15357 | (PF00805) | ||||
| 313624.N9414_01999 | (PF00124) | ||||
| 313624.N9414_05614 | (PF00059) | ||||
| 313624.N9414_01994 | (PF00421) | ||||
| 313624.N9414_21661 | (PF06202) | ||||
| 313624.N9414_06424 | (PF07282) | ||||
| 313624.N9414_04415 | (PF06596) | not used | |||
| 313624.N9414_22153 | (PF00639) | ||||
| 313624.N9414_22158 | (PF13613) | ||||
| 313624.N9414_09051 | (PF07282) | ||||
| 313624.N9414_07918 | (PF00534) | ||||
| 313624.N9414_10038 | (PF10999) | not used | |||
| 313624.N9414_07913 | (PF13359) | ||||
| 313624.N9414_14238 | (PF03412) | ||||
| 313624.N9414_05190 | PF10184 | ||||
| 313624.N9414_14233 | (PF00639) | ||||
| 313624.N9414_01455 | (PF14234) | ||||
| 313624.N9414_21055 | PF14279 | ||||
| 313624.N9414_18553 | (PF00226) | ||||
| 313624.N9414_09276 | (PF05969) | not used | |||
| 313624.N9414_08670 | (PF00534) | not used | |||
| 313624.N9414_16062 | (PF09353) | ||||
| 313624.N9414_07459 | (PF12899) | ||||
| 313624.N9414_07454 | (PF12899) | ||||
| 313624.N9414_17792 | (PF00124) | ||||
| 313624.N9414_24088 | (PF00534) | ||||
| 313624.N9414_13942 | (PF00639) | ||||
| 313624.N9414_04820 | (PF01555) | ||||
| 313624.N9414_01707 | (PF00852) | ||||
| 313624.N9414_01854 | (PF05685) | ||||
| 313624.N9414_20415 | (PF03412) | ||||
| 313624.N9414_19864 | (PF13359) | ||||
| 313624.N9414_22568 | (PF06472) | ||||
| 313624.N9414_18950 | (PF05685) | ||||
| 313624.N9414_13235 | (PF00805) | ||||
| 313624.N9414_24268 | (PF03055) | ||||
| 313624.N9414_16891 | (PF01555) | ||||
| 313624.N9414_22388 | (PF05685) | ||||
| 313624.N9414_09516 | PF05419 | ||||
| 313624.N9414_09044 | (PF12323) | ||||
| 313624.N9414_00255 | (PF02533) | not used | |||
| 313624.N9414_11554 | (PF00421) | ||||
| 313624.N9414_16479 | PF14279 | ||||
| 313624.N9414_11314 | (PF13359) | ||||
| 313624.N9414_11799 | (PF00805) | ||||
| 313624.N9414_19147 | PF05115 | not used | |||
| 313624.N9414_07701 | (PF08242) | ||||
| 313624.N9414_04830 | (PF05685) | ||||
| 313624.N9414_01717 | (PF11051) | ||||
| 313624.N9414_03623 | (PF00805) | ||||
| 313624.N9414_06094 | (PF02943) | ||||
| 313624.N9414_24073 | (PF01761) | ||||
| 313624.N9414_22553 | (PF08242) | ||||
| 313624.N9414_15842 | (PF05685) | ||||
| 313624.N9414_13140 | (PF07282) | ||||
| 313624.N9414_06404 | (PF00145) | ||||
| 313624.N9414_05709 | PF00504 | ||||
| 313624.N9414_22738 | (PF05685) | ||||
| 313624.N9414_22048 | (PF01218) | ||||
| 313624.N9414_10780 | (PF07282) | not used | |||
| 313624.N9414_10785 | (PF08242) | ||||
| 313624.N9414_02891 | (PF00515) | not used | |||
| 313624.N9414_11549 | (PF00421) | ||||
| 313624.N9414_17917 | (PF00283) | not used | |||
| 313624.N9414_11012 | (PF00805) | ||||
| 313624.N9414_09676 | (PF07282) | ||||
| 313624.N9414_13455 | (PF00534) | ||||
| 313624.N9414_05399 | (PF05685) | ||||
| 313624.N9414_07711 | (PF08242) | ||||
| 313624.N9414_15205 | (PF05685) | ||||
| 313624.N9414_04020 | (PF13414) | ||||
| 313624.N9414_04845 | (PF10674) | ||||
| 313624.N9414_20545 | (PF05685) | ||||
| 313624.N9414_16252 | (PF00534) | ||||
| 313624.N9414_02411 | (PF04483) | ||||
| 313624.N9414_23703 | (PF05685) | ||||
| 313624.N9414_17353 | (PF00226) | ||||
| 313624.N9414_09066 | (PF11267) | ||||
| 313624.N9414_20945 | (PF06472) | ||||
| 313624.N9414_22053 | (PF01218) | ||||
| 313624.N9414_18018 | (PF05685) | ||||
| 313624.N9414_13048 | (PF00145) | ||||
| 313624.N9414_04530 | (PF05685) | ||||
| 313624.N9414_15075 | (PF01555) | ||||
| 313624.N9414_13595 | (PF14249) | ||||
| 313624.N9414_10173 | (PF00805) | ||||
| 313624.N9414_09241 | (PF05685) | ||||
| 313624.N9414_11194 | (PF00124) | ||||
| 313624.N9414_10817 | PF05419 | ||||
| 313624.N9414_19347 | (PF05685) | ||||
| 313624.N9414_13912 | (PF12049) | ||||
| 313624.N9414_13867 | (PF01025) | ||||
| 313624.N9414_15992 | (PF07282) | ||||
| 313624.N9414_13862 | (PF07282) | ||||
| 313624.N9414_20625 | (PF00101) | ||||
| 313624.N9414_04700 | PF05419 | ||||
| 313624.N9414_24053 | (PF00218) | ||||
| 313624.N9414_19852 | (PF05685) | ||||
| 313624.N9414_17443 | (PF13613) | ||||
| 313624.N9414_18003 | PF14279 | ||||
| 313624.N9414_22068 | (PF11264) | ||||
| 313624.N9414_17807 | (PF00515) | ||||
| 313624.N9414_16409 | (PF00124) | ||||
| 313624.N9414_08635 | PF14279 | ||||
| 313624.N9414_07881 | (PF00805) | ||||
| 313624.N9414_04045 | (PF14159) | ||||
| 313624.N9414_04040 | (PF13366) | ||||
| 313624.N9414_11744 | (PF11965) | ||||
| 313624.N9414_12988 | (PF01555) | ||||
| 313624.N9414_19407 | PF14279 | ||||
| 313624.N9414_10972 | (PF05685) | ||||
| 313624.N9414_04995 | (PF07927) | ||||
| 313624.N9414_24273 | (PF03092) | ||||
| 313624.N9414_15987 | (PF07927) | ||||
| 313624.N9414_13877 | (PF00226) | ||||
| 313624.N9414_02476 | (PF05685) | ||||
| 313624.N9414_02471 | (PF05685) | ||||
| 313624.N9414_08714 | (PF00534) | ||||
| 313624.N9414_21983 | (PF14159) | ||||
| 313624.N9414_20635 | (PF00101) | ||||
| 313624.N9414_23038 | (PF13359) | ||||
| 313624.N9414_23033 | (PF13613) | ||||
| 313624.N9414_02104 | (PF02415) | ||||
| 313624.N9414_23458 | (PF01025) | ||||
| 313624.N9414_16299 | (PF00639) | ||||
| 313624.N9414_02291 | (PF00534) | ||||
| 313624.N9414_16986 | PF00504 | ||||
| 313624.N9414_04515 | (PF01405) | not used | |||
| 313624.N9414_16966 | PF05419 | ||||
| 313624.N9414_23523 | PF14279 | ||||
| 313624.N9414_10775 | (PF00124) | ||||
| 313624.N9414_00290 | (PF08853) | ||||
| 313624.N9414_17962 | (PF05685) | ||||
| 313624.N9414_18103 | (PF12527) | ||||
| 313624.N9414_09131 | (PF00124) | ||||
| 313624.N9414_21500 | (PF07927) | not used | |||
| 313624.N9414_01245 | (PF00515) | ||||
| 313624.N9414_18720 | (PF13414) | ||||
| 313624.N9414_00345 | (PF05685) | ||||
| 313624.N9414_02911 | (PF00145) | ||||
| 313624.N9414_10608 | (PF00534) | ||||
| 313624.N9414_14283 | PF14279 | ||||
| 313624.N9414_05839 | PF14279 | ||||
| 313624.N9414_17742 | (PF01218) | ||||
| 313624.N9414_00190 | (PF14234) | ||||
| 313624.N9414_23853 | (PF13366) | not used | |||
| 313624.N9414_15422 | (PF00805) | ||||
| 313624.N9414_20355 | (PF05542) | ||||
| 313624.N9414_01757 | (PF00145) | ||||
| 313624.N9414_03066 | (PF07927) | not used | |||
| 313624.N9414_21998 | PF10184 | ||||
| 313624.N9414_00575 | (PF07282) | ||||
| 313624.N9414_17563 | (PF07282) | ||||
| 313624.N9414_15732 | (PF06999) | not used | |||
| 313624.N9414_16354 | (PF07082) | ||||
| 313624.N9414_14920 | (PF00145) | ||||
| 313624.N9414_20640 | (PF02341) | ||||
| 313624.N9414_20009 | (PF00805) | ||||
| 313624.N9414_07354 | (PF02941) | ||||
| 313624.N9414_24328 | PF11378 | not used | |||
| 313624.N9414_22463 | (PF06472) | ||||
| 313624.N9414_14605 | (PF00515) | ||||
| 313624.N9414_16991 | PF00504 | ||||
| 313624.N9414_13737 | (PF07282) | ||||
| 313624.N9414_00995 | (PF00534) | ||||
| 313624.N9414_03875 | (PF05685) | ||||
| 313624.N9414_09386 | (PF00226) | ||||
| 313624.N9414_10398 | (PF12323) | ||||
| 313624.N9414_02951 | (PF02163) | ||||
| 313624.N9414_01235 | (PF05685) | ||||
| 313624.N9414_07836 | (PF07282) | ||||
| 313624.N9414_10128 | (PF09366) | ||||
| 313624.N9414_19732 | (PF07282) | ||||
| 313624.N9414_06939 | (PF07247) | ||||
| 313624.N9414_16514 | (PF12263) | ||||
| 313624.N9414_08989 | (PF00534) | ||||
| 313624.N9414_09366 | (PF12323) | ||||
| 313624.N9414_07993 | (PF00534) | not used | |||
| 313624.N9414_00740 | (PF12263) | ||||
| 313624.N9414_03276 | (PF00218) | ||||
| 313624.N9414_23848 | (PF13366) | not used | |||
| 313624.N9414_15557 | (PF10013) | not used | |||
| 313624.N9414_03413 | (PF05685) | ||||
| 313624.N9414_04880 | (PF08855) | ||||
| 313624.N9414_22873 | (PF00226) | ||||
| 313624.N9414_20014 | PF14279 | ||||
| 313624.N9414_11067 | (PF00534) | ||||
| 313624.N9414_07034 | (PF00534) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
