Metamenu

Effective results for Rhodopseudomonas palustris BisB18 (eggnog40)

Summary

Number of putative secreted proteins: 152
- Predicted by T4SEpre: 94
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 77 proteins (4 high, 73 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
316056.RPC_3566(PF13872) (PF13871)(mitochondrial); plastid
316056.RPC_1940+mitochondrial
316056.RPC_2910+(ER)
316056.RPC_4504(PF01058)(mitochondrial)
316056.RPC_2105+ER
316056.RPC_0500+ER
316056.RPC_4342+(ER)
316056.RPC_3066PF14295ER
316056.RPC_0285+ER
316056.RPC_1240(PF03209)ER
316056.RPC_2128+ER
316056.RPC_2411(PF00146)ER
316056.RPC_4574(PF00146)ER
316056.RPC_0930(PF00146)ER
316056.RPC_0933(PF00329) (PF00346)(mitochondrial)
316056.RPC_3919(PF13872) (PF13871)(plastid)
316056.RPC_2278+ER
316056.RPC_2500(PF02931)ER
316056.RPC_2879+mitochondrial
316056.RPC_0834(PF07085) (PF13500)(mitochondrial)
316056.RPC_3020+ER
316056.RPC_0731PF14295ER; (ER)
316056.RPC_1229+ER
316056.RPC_2323+ER
316056.RPC_1615+mitochondrial; plastid
316056.RPC_1503+mitochondrial
316056.RPC_3312+ER
316056.RPC_0771+ER
316056.RPC_0308+(mitochondrial)
316056.RPC_1454+ER
316056.RPC_1516+ER
316056.RPC_1318(PF03209)mitochondrial; (mitochondrial)
316056.RPC_2149+ER
316056.RPC_3787(PF03209)ER
316056.RPC_4065(PF00146)ER
316056.RPC_1303(PF03209)ER
316056.RPC_3261+ER
316056.RPC_3687+mitochondrial; (mitochondrial)
316056.RPC_3775(PF01058)(ER)
316056.RPC_4505(PF00146)ER
316056.RPC_3427+mitochondrial
316056.RPC_0421(PF10908)(mitochondrial)
316056.RPC_3234+ER
316056.RPC_1327(PF00016) (PF02788)(plastid)
316056.RPC_0855+ER; (ER)
316056.RPC_2007(PF07085) (PF13500)(ER)
316056.RPC_1079(PF07085) (PF13500)(mitochondrial)
316056.RPC_4006+(mitochondrial)
316056.RPC_4570(PF00329) (PF00346)
316056.RPC_0870+(plastid)
316056.RPC_2705+(ER)
316056.RPC_0252(PF00016) (PF02788)
316056.RPC_1724(PF11918)(ER)
316056.RPC_0833(PF00871)(plastid)
316056.RPC_0061+(ER)
316056.RPC_2895(PF00016) (PF02788)
316056.RPC_1180(PF00871)(plastid)
316056.RPC_0643(PF07085) (PF13500)
316056.RPC_3806(PF00871)(plastid)
316056.RPC_4069(PF00329) (PF00346)
316056.RPC_3188(PF10908)plastid
316056.RPC_2006(PF00871)(plastid)
316056.RPC_1078(PF00871)plastid
316056.RPC_4367+plastid
316056.RPC_0847+
316056.RPC_4502(PF00329)
316056.RPC_4622(PF02371)
316056.RPC_4172+
316056.RPC_0012+
316056.RPC_0011+
316056.RPC_1498+
316056.RPC_3080(PF13086)
316056.RPC_3642(PF02371)
316056.RPC_2256(PF06100)
316056.RPC_3395+
316056.RPC_4807+
316056.RPC_3275(PF02371)
316056.RPC_1294(PF00148)
316056.RPC_0175+
316056.RPC_1722+
316056.RPC_2404(PF00346)
316056.RPC_2402(PF00329)
316056.RPC_2400(PF01058)
316056.RPC_4495+
316056.RPC_3282+
316056.RPC_3252+
316056.RPC_0934(PF01058)
316056.RPC_1209+
316056.RPC_2098(PF13500)
316056.RPC_2092(PF02371)
316056.RPC_2271+
316056.RPC_4486PF04184
316056.RPC_2746+
316056.RPC_0129PF01793
316056.RPC_1295(PF00148)
316056.RPC_3601(PF06100)
316056.RPC_3111+
316056.RPC_4459(PF00148)
316056.RPC_0329+
316056.RPC_0642(PF00871)
316056.RPC_3938(PF13086)
316056.RPC_2184(PF00016)
316056.RPC_2073+
316056.RPC_4440(PF02371)
316056.RPC_4021+
316056.RPC_0965(PF02371)
316056.RPC_3926(PF13086)
316056.RPC_1166+
316056.RPC_2667+
316056.RPC_2061(PF02371)
316056.RPC_3363+
316056.RPC_3357+
316056.RPC_1574(PF02371)
316056.RPC_3561+
316056.RPC_4683(PF00148)
316056.RPC_4681(PF00148)
316056.RPC_3124(PF02371)
316056.RPC_4462(PF00148)
316056.RPC_4460(PF00148)
316056.RPC_4461(PF00148)
316056.RPC_0761+
316056.RPC_1966(PF02371)
316056.RPC_1780+
316056.RPC_2227+
316056.RPC_4070(PF01058)
316056.RPC_4099+
316056.RPC_1313(PF00148)
316056.RPC_1314(PF00148)
316056.RPC_3977+
316056.RPC_3819+
316056.RPC_2785+
316056.RPC_1309+
316056.RPC_0893+
316056.RPC_3772(PF01058)
316056.RPC_3778+
316056.RPC_1921+
316056.RPC_4494+
316056.RPC_4501(PF00346)
316056.RPC_3226+
316056.RPC_3425+
316056.RPC_0422(PF05706)
316056.RPC_2010(PF02371)
316056.RPC_3160(PF02371)
316056.RPC_2344+
316056.RPC_4207+
316056.RPC_1109+
316056.RPC_1455(PF01442)
316056.RPC_1904+
316056.RPC_0346+
316056.RPC_4749+
316056.RPC_4568(PF01058)
316056.RPC_4365+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.3 (13/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================