Metamenu

Effective results for Marinobacter hydrocarbonoclasticus VT8 (eggnog40)

Summary

Number of putative secreted proteins: 121
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 121 proteins (23 high, 98 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
351348.Maqu_3216(PF08022) (PF01794)ER
351348.Maqu_1224(PF00665) (PF13384)mitochondrial
351348.Maqu_3708(PF00665) (PF13384)mitochondrial
351348.Maqu_0892(PF00665) (PF13384)mitochondrial
351348.Maqu_1288(PF08022) (PF01794)ER
351348.Maqu_1299(PF00665) (PF13384)mitochondrial
351348.Maqu_0988(PF00665) (PF13384)mitochondrial
351348.Maqu_3187(PF00665) (PF13384)mitochondrial
351348.Maqu_3093(PF08022) (PF01794)ER
351348.Maqu_2660(PF00665) (PF13384)mitochondrial
351348.Maqu_1279(PF12974)ER
351348.Maqu_0646(PF00665)mitochondrial
351348.Maqu_2982(PF00665)(mitochondrial)
351348.Maqu_2285(PF12974)ER
351348.Maqu_0598(PF00665)(mitochondrial)
351348.Maqu_2296(PF00625)mitochondrial; (mitochondrial)
351348.Maqu_1852(PF00665)(mitochondrial)
351348.Maqu_2396(PF00665)(mitochondrial)
351348.Maqu_0890(PF01545)mitochondrial; (mitochondrial)
351348.Maqu_0412(PF02384)mitochondrial
351348.Maqu_0410(PF00665)(mitochondrial)
351348.Maqu_0887(PF01794)ER
351348.Maqu_1620(PF13429)ER
351348.Maqu_1628(PF00665)mitochondrial; (mitochondrial)
351348.Maqu_0407(PF00665)mitochondrial
351348.Maqu_0400(PF00665)mitochondrial
351348.Maqu_3664(PF12974)ER
351348.Maqu_3181(PF00665)mitochondrial
351348.Maqu_3180(PF00665)(mitochondrial)
351348.Maqu_0214(PF12974)ER
351348.Maqu_0193(PF00665)mitochondrial; (mitochondrial)
351348.Maqu_0997(PF00665)(mitochondrial)
351348.Maqu_1001(PF00665)(mitochondrial)
351348.Maqu_3469(PF06241)mitochondrial
351348.Maqu_3241(PF12974)ER
351348.Maqu_1903(PF13429)ER
351348.Maqu_3254(PF12974)ER
351348.Maqu_3257(PF12974)ER
351348.Maqu_1328(PF00665)mitochondrial
351348.Maqu_2256(PF00665)(mitochondrial)
351348.Maqu_0337(PF01545)(ER); ER
351348.Maqu_1446(PF12974)mitochondrial
351348.Maqu_1180(PF12973)(mitochondrial)
351348.Maqu_3631(PF12038)(mitochondrial)
351348.Maqu_3109(PF01545)(ER)
351348.Maqu_0561(PF02384)(mitochondrial)
351348.Maqu_1588(PF11815)(mitochondrial)
351348.Maqu_0224(PF00625)(plastid)
351348.Maqu_1457(PF05598)
351348.Maqu_3104(PF10013)not used
351348.Maqu_3210(PF01545)
351348.Maqu_3179PF01695
351348.Maqu_0079(PF06339)
351348.Maqu_1213(PF05598)
351348.Maqu_2569(PF02696)
351348.Maqu_0586(PF12973)
351348.Maqu_2981PF01695
351348.Maqu_1225PF01695
351348.Maqu_1408(PF01545)
351348.Maqu_0597PF01695
351348.Maqu_3398(PF06039)
351348.Maqu_3712(PF05598)
351348.Maqu_0443(PF05598)
351348.Maqu_0444(PF06339)
351348.Maqu_0616(PF06339)
351348.Maqu_3380(PF02384)
351348.Maqu_2389(PF02384)
351348.Maqu_3709PF01695
351348.Maqu_1853PF01695
351348.Maqu_0604(PF05598)
351348.Maqu_0603(PF05598)
351348.Maqu_2390(PF05598)
351348.Maqu_2397PF01695
351348.Maqu_0423(PF12973)
351348.Maqu_0383(PF05598)
351348.Maqu_1383(PF06039)
351348.Maqu_0891PF01695
351348.Maqu_3832(PF05598)
351348.Maqu_0634(PF00625)
351348.Maqu_0413(PF02384)
351348.Maqu_0411PF01695
351348.Maqu_0565(PF16565)
351348.Maqu_1629PF01695
351348.Maqu_3535(PF13875)
351348.Maqu_2220(PF03015)
351348.Maqu_3193(PF01545)
351348.Maqu_1298PF01695
351348.Maqu_1297PF01695
351348.Maqu_1296(PF00665)
351348.Maqu_1294(PF01545)
351348.Maqu_0982(PF05598)
351348.Maqu_0985(PF05598)
351348.Maqu_0987PF01695
351348.Maqu_1036(PF01545)
351348.Maqu_2583(PF02696)
351348.Maqu_2216(PF00665)
351348.Maqu_2217PF01695
351348.Maqu_3273(PF01545)
351348.Maqu_3275(PF01545)
351348.Maqu_3183(PF00665)
351348.Maqu_3188PF01695
351348.Maqu_0370(PF06039)
351348.Maqu_0192PF01695
351348.Maqu_0998PF01695
351348.Maqu_0517(PF12973)
351348.Maqu_2576(PF02696)
351348.Maqu_0236(PF00665)
351348.Maqu_0234(PF02384)
351348.Maqu_1330(PF00665)
351348.Maqu_1799(PF05598)
351348.Maqu_0031(PF02384)
351348.Maqu_1327PF01695
351348.Maqu_1326PF01695
351348.Maqu_1076PF01695
351348.Maqu_1075(PF00665)
351348.Maqu_3233(PF12973)
351348.Maqu_2255PF01695
351348.Maqu_0026(PF00665)
351348.Maqu_0025PF01695
351348.Maqu_1315(PF02384)
351348.Maqu_2661PF01695

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================