Effective results for Escherichia coli 536 (eggnog40)
Summary
Number of putative secreted proteins: 237
- Predicted by T4SEpre: 101
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 146 proteins (0 high, 146 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 362663.ECP_4278 | (PF02629) (PF00549) | (mitochondrial) | |||
| 362663.ECP_4164 | (PF02901) (PF01228) | (mitochondrial) | |||
| 362663.ECP_4036 | (PF02629) (PF00549) | (mitochondrial) | |||
| 362663.ECP_4550 | (PF00665) | (mitochondrial) | |||
| 362663.ECP_2557 | + | (ER) | |||
| 362663.ECP_3909 | (PF03222) | (ER) | |||
| 362663.ECP_4052 | + | ER | |||
| 362663.ECP_0751 | + | ER | |||
| 362663.ECP_2989 | (PF00665) | (mitochondrial); (plastid) | |||
| 362663.ECP_2508 | + | ER | |||
| 362663.ECP_3834 | (PF00665) | (mitochondrial) | |||
| 362663.ECP_0581 | (PF00696) | (mitochondrial) | |||
| 362663.ECP_1988 | + | ER | |||
| 362663.ECP_3127 | + | ER | |||
| 362663.ECP_2995 | (PF02796) (PF00665) | (plastid) | |||
| 362663.ECP_0298 | + | ER | |||
| 362663.ECP_0224 | + | (mitochondrial) | |||
| 362663.ECP_0822 | + | ER | |||
| 362663.ECP_2453 | + | ER | |||
| 362663.ECP_4682 | + | ER | |||
| 362663.ECP_3812 | (PF00345) | ER | |||
| 362663.ECP_3813 | (PF00345) | (mitochondrial); mitochondrial | |||
| 362663.ECP_3814 | (PF00577) | ER | |||
| 362663.ECP_3815 | (PF00345) | ER | |||
| 362663.ECP_0149 | (PF00577) | (ER) | |||
| 362663.ECP_1548 | + | ER | |||
| 362663.ECP_2148 | (PF00345) | ER | |||
| 362663.ECP_2147 | (PF00577) | ER | |||
| 362663.ECP_4652 | (PF00577) | (mitochondrial) | |||
| 362663.ECP_0555 | + | ER | |||
| 362663.ECP_0150 | (PF00345) | mitochondrial; (mitochondrial) | |||
| 362663.ECP_2025 | (PF02796) (PF00665) | (plastid) | |||
| 362663.ECP_3171 | (PF01204) | ER | |||
| 362663.ECP_3774 | (PF02796) (PF00665) | (plastid) | |||
| 362663.ECP_2544 | (PF00665) | (mitochondrial) | |||
| 362663.ECP_2788 | + | mitochondrial; (mitochondrial) | |||
| 362663.ECP_2817 | + | ER | |||
| 362663.ECP_0413 | (PF00665) | (mitochondrial) | |||
| 362663.ECP_3783 | (PF00577) | ER | |||
| 362663.ECP_1453 | + | (mitochondrial) | |||
| 362663.ECP_3784 | (PF00345) | ER | |||
| 362663.ECP_3541 | + | ER | |||
| 362663.ECP_1211 | (PF13436) | (ER) | |||
| 362663.ECP_3806 | (PF00665) | (mitochondrial); (plastid) | |||
| 362663.ECP_3768 | + | mitochondrial; (mitochondrial) | |||
| 362663.ECP_1850 | (PF03222) | ER; (ER) | |||
| 362663.ECP_0315 | + | ER | |||
| 362663.ECP_1134 | (PF02796) (PF00665) | (plastid) | |||
| 362663.ECP_1683 | + | ER; (ER) | |||
| 362663.ECP_3673 | + | ER | |||
| 362663.ECP_2560 | + | ER | |||
| 362663.ECP_4538 | (PF00345) | ER | |||
| 362663.ECP_3698 | (PF08125) (PF01232) | (mitochondrial) | |||
| 362663.ECP_3189 | (PF00345) | ER | |||
| 362663.ECP_0985 | (PF00328) | ER | |||
| 362663.ECP_2970 | (PF00577) | (mitochondrial) | |||
| 362663.ECP_2593 | (PF00665) | (mitochondrial) | |||
| 362663.ECP_4617 | (PF02796) (PF00665) | (plastid) | |||
| 362663.ECP_2496 | + | ER | |||
| 362663.ECP_2375 | (PF00345) | ER | |||
| 362663.ECP_3519 | (PF00577) | (mitochondrial) | |||
| 362663.ECP_3516 | (PF00345) | ER | |||
| 362663.ECP_1245 | (PF01204) | ER | |||
| 362663.ECP_3423 | (PF02796) (PF00665) | (plastid) | |||
| 362663.ECP_0998 | (PF00665) | (mitochondrial) | |||
| 362663.ECP_4420 | + | ER | |||
| 362663.ECP_4608 | + | ER | |||
| 362663.ECP_0295 | (PF00345) | ER | |||
| 362663.ECP_3249 | (PF03222) | (ER); ER | |||
| 362663.ECP_4565 | (PF00665) | mitochondrial | |||
| 362663.ECP_0286 | + | (mitochondrial) | |||
| 362663.ECP_1001 | (PF00328) | ER | |||
| 362663.ECP_3535 | + | mitochondrial; (mitochondrial) | |||
| 362663.ECP_2134 | (PF01116) | (mitochondrial) | |||
| 362663.ECP_1079 | + | (mitochondrial); (plastid) | |||
| 362663.ECP_0276 | (PF02796) (PF00665) | (plastid) | |||
| 362663.ECP_3419 | + | ER | |||
| 362663.ECP_2216 | + | (ER); ER | |||
| 362663.ECP_3841 | (PF02796) (PF00665) | (plastid) | |||
| 362663.ECP_3262 | + | ER | |||
| 362663.ECP_3280 | + | ER | |||
| 362663.ECP_0002 | (PF00696) | (mitochondrial); mitochondrial | |||
| 362663.ECP_2707 | (PF02796) (PF00665) | (plastid) | |||
| 362663.ECP_2706 | (PF00665) | (mitochondrial); (plastid) | |||
| 362663.ECP_4553 | + | (ER) | |||
| 362663.ECP_1505 | (PF08125) (PF01232) | ||||
| 362663.ECP_1833 | + | (mitochondrial) | |||
| 362663.ECP_2409 | (PF05524) | (mitochondrial) | |||
| 362663.ECP_3100 | (PF08125) (PF01232) | ||||
| 362663.ECP_3829 | + | (ER) | |||
| 362663.ECP_0246 | + | (ER) | |||
| 362663.ECP_2473 | (PF10662) | (mitochondrial) | |||
| 362663.ECP_3836 | + | plastid | |||
| 362663.ECP_0836 | (PF02901) (PF01228) | ||||
| 362663.ECP_0740 | (PF02629) (PF00549) | ||||
| 362663.ECP_0578 | (PF02629) (PF00549) | ||||
| 362663.ECP_0914 | (PF02901) (PF01228) | ||||
| 362663.ECP_2858 | (PF03222) | (ER) | |||
| 362663.ECP_2213 | (PF08125) (PF01232) | ||||
| 362663.ECP_4659 | (PF08125) (PF01232) | ||||
| 362663.ECP_3772 | (PF00665) | (ER) | |||
| 362663.ECP_2959 | (PF03711) (PF01276) | ||||
| 362663.ECP_3207 | (PF02901) (PF01228) | ||||
| 362663.ECP_3757 | (PF01116) | (mitochondrial) | |||
| 362663.ECP_4539 | (PF00577) | (mitochondrial) | |||
| 362663.ECP_0327 | (PF03711) (PF01276) | ||||
| 362663.ECP_4620 | (PF00665) | (plastid) | |||
| 362663.ECP_2632 | + | (mitochondrial) | |||
| 362663.ECP_0194 | (PF03711) (PF01276) | ||||
| 362663.ECP_2376 | (PF00577) | (ER) | |||
| 362663.ECP_3347 | (PF01116) | (mitochondrial) | |||
| 362663.ECP_4600 | (PF02901) (PF01228) | ||||
| 362663.ECP_4360 | (PF03711) (PF01276) | ||||
| 362663.ECP_0283 | (PF00665) | (mitochondrial) | |||
| 362663.ECP_0711 | (PF03711) (PF01276) | ||||
| 362663.ECP_4375 | (PF03711) (PF01276) | ||||
| 362663.ECP_3385 | + | (mitochondrial) | |||
| 362663.ECP_1526 | (PF08125) (PF01232) | ||||
| 362663.ECP_3672 | + | (mitochondrial) | |||
| 362663.ECP_0397 | (PF02629) (PF00549) | ||||
| 362663.ECP_0399 | + | (PF00696) | |||
| 362663.ECP_3218 | + | ||||
| 362663.ECP_3073 | (PF03738) | ||||
| 362663.ECP_1298 | + | ||||
| 362663.ECP_1721 | (PF01116) | ||||
| 362663.ECP_0109 | + | ||||
| 362663.ECP_3472 | + | ||||
| 362663.ECP_0815 | (PF02615) | ||||
| 362663.ECP_2073 | + | ||||
| 362663.ECP_3619 | (PF01204) | ||||
| 362663.ECP_3102 | (PF02615) | ||||
| 362663.ECP_2884 | + | ||||
| 362663.ECP_4120 | + | ||||
| 362663.ECP_0240 | + | ||||
| 362663.ECP_0803 | + | ||||
| 362663.ECP_3209 | (PF03222) | ||||
| 362663.ECP_2065 | + | ||||
| 362663.ECP_3837 | (PF00665) | ||||
| 362663.ECP_0587 | + | ||||
| 362663.ECP_0567 | + | ||||
| 362663.ECP_2050 | (PF10662) | ||||
| 362663.ECP_3129 | (PF03738) | ||||
| 362663.ECP_0037 | + | ||||
| 362663.ECP_2996 | (PF01695) | ||||
| 362663.ECP_2868 | (PF00696) | ||||
| 362663.ECP_4692 | (PF01695) | ||||
| 362663.ECP_1942 | + | ||||
| 362663.ECP_4109 | + | ||||
| 362663.ECP_2609 | + | ||||
| 362663.ECP_4076 | + | ||||
| 362663.ECP_0351 | + | ||||
| 362663.ECP_4676 | + | ||||
| 362663.ECP_1080 | + | ||||
| 362663.ECP_0577 | (PF02615) | ||||
| 362663.ECP_2260 | + | ||||
| 362663.ECP_1775 | + | ||||
| 362663.ECP_0179 | (PF00696) | ||||
| 362663.ECP_3158 | + | ||||
| 362663.ECP_2856 | + | ||||
| 362663.ECP_1099 | + | ||||
| 362663.ECP_2038 | + | ||||
| 362663.ECP_1231 | + | ||||
| 362663.ECP_2440 | (PF05524) | ||||
| 362663.ECP_2842 | (PF05524) | ||||
| 362663.ECP_4277 | (PF00549) | ||||
| 362663.ECP_4006 | + | ||||
| 362663.ECP_3330 | + | ||||
| 362663.ECP_4301 | + | ||||
| 362663.ECP_4651 | (PF00345) | ||||
| 362663.ECP_2024 | (PF01695) | ||||
| 362663.ECP_2159 | + | ||||
| 362663.ECP_3270 | + | ||||
| 362663.ECP_3773 | (PF01695) | ||||
| 362663.ECP_3771 | (PF13518) | ||||
| 362663.ECP_2543 | (PF13518) | ||||
| 362663.ECP_2830 | (PF00696) | ||||
| 362663.ECP_1936 | + | ||||
| 362663.ECP_3932 | + | ||||
| 362663.ECP_4311 | (PF13518) | ||||
| 362663.ECP_4312 | (PF00665) | ||||
| 362663.ECP_1145 | + | ||||
| 362663.ECP_0414 | (PF13518) | ||||
| 362663.ECP_2828 | + | ||||
| 362663.ECP_1926 | + | ||||
| 362663.ECP_4523 | + | ||||
| 362663.ECP_0318 | (PF00665) | ||||
| 362663.ECP_0319 | (PF01695) | ||||
| 362663.ECP_0538 | + | ||||
| 362663.ECP_1133 | (PF01695) | ||||
| 362663.ECP_0322 | + | ||||
| 362663.ECP_0173 | + | ||||
| 362663.ECP_0954 | + | ||||
| 362663.ECP_3756 | (PF01116) | ||||
| 362663.ECP_2969 | (PF00345) | ||||
| 362663.ECP_4242 | (PF00696) | ||||
| 362663.ECP_2581 | (PF01228) | ||||
| 362663.ECP_3564 | (PF13518) | ||||
| 362663.ECP_3563 | (PF00665) | ||||
| 362663.ECP_4431 | (PF03738) | ||||
| 362663.ECP_4430 | + | ||||
| 362663.ECP_3229 | (PF01116) | ||||
| 362663.ECP_2594 | (PF13518) | ||||
| 362663.ECP_4616 | (PF01695) | ||||
| 362663.ECP_4611 | (PF00665) | ||||
| 362663.ECP_0426 | + | ||||
| 362663.ECP_1246 | (PF05524) | ||||
| 362663.ECP_3424 | (PF01695) | ||||
| 362663.ECP_3421 | + | ||||
| 362663.ECP_2600 | + | ||||
| 362663.ECP_0997 | (PF13518) | ||||
| 362663.ECP_3640 | (PF03222) | ||||
| 362663.ECP_4280 | (PF02615) | ||||
| 362663.ECP_0296 | (PF00577) | ||||
| 362663.ECP_3505 | (PF05189) | ||||
| 362663.ECP_1499 | (PF00577) | ||||
| 362663.ECP_3724 | (PF01501) | ||||
| 362663.ECP_3725 | (PF06176) | ||||
| 362663.ECP_3726 | (PF01501) | ||||
| 362663.ECP_3727 | (PF01501) | ||||
| 362663.ECP_2914 | (PF01116) | ||||
| 362663.ECP_1959 | + | ||||
| 362663.ECP_4161 | (PF05524) | ||||
| 362663.ECP_4419 | + | ||||
| 362663.ECP_0066 | + | ||||
| 362663.ECP_4172 | (PF00696) | ||||
| 362663.ECP_0277 | (PF01695) | ||||
| 362663.ECP_0271 | (PF00696) | ||||
| 362663.ECP_3520 | (PF00345) | ||||
| 362663.ECP_1606 | + | ||||
| 362663.ECP_3670 | + | ||||
| 362663.ECP_3679 | (PF02615) | ||||
| 362663.ECP_4149 | (PF00696) | ||||
| 362663.ECP_4499 | (PF00696) | ||||
| 362663.ECP_3842 | (PF01695) | ||||
| 362663.ECP_4034 | (PF00696) | ||||
| 362663.ECP_0739 | (PF00549) | ||||
| 362663.ECP_2703 | (PF01695) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.0 (0/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 2.125 (17/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.0 (0/10 KEGG proteins)
Estimated copy number = 2.125 (17/8 KEGG proteins)
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