Effective results for Acidithiobacillus ferrooxidans ATCC 53993 (eggnog40)

Summary

Number of putative secreted proteins: 36
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 36 proteins (2 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
380394.Lferr_2419				(PF10544)	ER
380394.Lferr_1900				(PF07678)	ER
380394.Lferr_0983				(PF14721)	ER
380394.Lferr_1267				(PF00862)	(ER)
380394.Lferr_2106				(PF03203)	(ER)
380394.Lferr_2660				(PF00016) (PF02788)
380394.Lferr_1814				(PF00016) (PF02788)
380394.Lferr_1389				(PF00016) (PF02788)
380394.Lferr_2175				(PF01597)
380394.Lferr_2177				(PF01597)
380394.Lferr_1286				(PF04326)
380394.Lferr_1284				(PF10544)
380394.Lferr_2411				(PF01906)
380394.Lferr_0904				(PF02823)
380394.Lferr_0596				(PF00016)
380394.Lferr_1268				(PF00862)
380394.Lferr_1673				(PF04299)
380394.Lferr_1094				(PF01597)
380394.Lferr_0743				PF11331
380394.Lferr_2011				(PF04326)
380394.Lferr_2047				(PF04326)
380394.Lferr_2795				(PF04326)
380394.Lferr_1684				(PF01906)
380394.Lferr_1683				(PF01906)
380394.Lferr_2490				(PF01597)
380394.Lferr_2806				(PF02823)
380394.Lferr_2068				PF14712
380394.Lferr_2661				(PF00101)
380394.Lferr_2053				(PF02823)
380394.Lferr_0287				(PF11074)
380394.Lferr_0160				(PF03203)
380394.Lferr_0163				(PF03203)
380394.Lferr_1010				(PF01906)
380394.Lferr_1388				(PF00101)
380394.Lferr_2433				(PF04299)
380394.Lferr_2763				(PF04299)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================