Effective results for Roseobacter sp. SK209-2-6 (eggnog40)
Summary
Number of putative secreted proteins: 126
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 126 proteins (37 high, 89 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
388739.RSK20926_06362 | PF16350 (PF08669) (PF01571) | (ER) | |||
388739.RSK20926_00275 | PF16350 (PF08669) (PF01571) | (ER); (mitochondrial) | |||
388739.RSK20926_04947 | PF16350 (PF08669) (PF01571) | ER | |||
388739.RSK20926_04942 | PF16350 (PF08669) (PF01571) | ER | |||
388739.RSK20926_18122 | PF16350 (PF08669) (PF01571) | (ER) | |||
388739.RSK20926_18022 | (PF01571) (PF08669) | (mitochondrial) | |||
388739.RSK20926_18127 | PF16350 (PF08669) (PF01571) | (ER) | |||
388739.RSK20926_00800 | (PF01571) (PF08669) | (mitochondrial) | |||
388739.RSK20926_09684 | PF16350 (PF08669) (PF01571) | ||||
388739.RSK20926_01362 | (PF13276) | (mitochondrial); mitochondrial | |||
388739.RSK20926_16887 | PF16350 (PF08669) (PF01571) | ||||
388739.RSK20926_19897 | PF16350 (PF08669) (PF01571) | ||||
388739.RSK20926_08197 | (PF13704) | mitochondrial | |||
388739.RSK20926_10119 | (PF00909) | ER | |||
388739.RSK20926_18592 | (PF00909) | ER | |||
388739.RSK20926_12219 | (PF13276) | mitochondrial | |||
388739.RSK20926_01937 | (PF00909) | ER | |||
388739.RSK20926_08642 | (PF10517) | mitochondrial | |||
388739.RSK20926_21370 | (PF11927) | (mitochondrial) | |||
388739.RSK20926_13059 | PF16350 (PF08669) (PF01571) | ||||
388739.RSK20926_18192 | (PF03092) | (mitochondrial) | |||
388739.RSK20926_17202 | (PF03567) | mitochondrial | |||
388739.RSK20926_01982 | PF16350 (PF08669) (PF01571) | ||||
388739.RSK20926_01212 | (PF03567) | mitochondrial; (mitochondrial) | |||
388739.RSK20926_09674 | PF16350 (PF08669) (PF01571) | ||||
388739.RSK20926_15481 | PF13683 (PF13276) | (mitochondrial) | |||
388739.RSK20926_06132 | PF16350 (PF08669) (PF01571) | ||||
388739.RSK20926_14851 | (PF01571) (PF08669) | (mitochondrial) | |||
388739.RSK20926_21594 | (PF01571) (PF08669) | ||||
388739.RSK20926_22344 | (PF01527) | (mitochondrial) | |||
388739.RSK20926_22349 | PF13683 (PF13276) | ||||
388739.RSK20926_12939 | (PF01571) (PF08669) | ||||
388739.RSK20926_21300 | (PF01527) | (mitochondrial) | |||
388739.RSK20926_19842 | (PF01571) (PF08669) | ||||
388739.RSK20926_14014 | PF13683 (PF13276) | ||||
388739.RSK20926_05472 | (PF10517) | (ER) | |||
388739.RSK20926_14009 | (PF01527) | (mitochondrial) | |||
388739.RSK20926_00805 | (PF00909) | (mitochondrial) | |||
388739.RSK20926_14529 | (PF01527) | (mitochondrial) | |||
388739.RSK20926_02202 | (PF01527) | (mitochondrial) | |||
388739.RSK20926_04997 | (PF07045) | (mitochondrial) | |||
388739.RSK20926_03634 | (PF01571) (PF08669) | ||||
388739.RSK20926_20330 | (PF01527) | (mitochondrial) | |||
388739.RSK20926_20325 | PF13683 (PF13276) | ||||
388739.RSK20926_08202 | (PF13704) | (plastid) | |||
388739.RSK20926_01377 | (PF01527) | (mitochondrial) | |||
388739.RSK20926_06712 | PF13683 (PF13276) | ||||
388739.RSK20926_02599 | (PF01571) (PF08669) | ||||
388739.RSK20926_00640 | (PF13409) | (mitochondrial) | |||
388739.RSK20926_21295 | PF13683 (PF13276) | ||||
388739.RSK20926_01382 | PF13683 (PF13276) | ||||
388739.RSK20926_03254 | (PF01527) | (mitochondrial) | |||
388739.RSK20926_03259 | PF13683 (PF13276) | ||||
388739.RSK20926_20395 | PF13683 (PF13276) | ||||
388739.RSK20926_20390 | (PF01527) | (mitochondrial) | |||
388739.RSK20926_19927 | (PF01527) | (mitochondrial) | |||
388739.RSK20926_19922 | PF13683 (PF13276) | ||||
388739.RSK20926_00865 | (PF01571) (PF08669) | ||||
388739.RSK20926_20360 | (PF01527) | (mitochondrial) | |||
388739.RSK20926_20365 | PF13683 (PF13276) | ||||
388739.RSK20926_07723 | (PF01571) (PF08669) | ||||
388739.RSK20926_12674 | PF13683 (PF13276) | ||||
388739.RSK20926_14534 | PF13683 (PF13276) | ||||
388739.RSK20926_02197 | PF13683 (PF13276) | ||||
388739.RSK20926_19967 | PF13683 (PF13276) | ||||
388739.RSK20926_20067 | (PF01527) | (mitochondrial) | |||
388739.RSK20926_20062 | PF13683 (PF13276) | ||||
388739.RSK20926_05812 | (PF13409) | ||||
388739.RSK20926_13419 | (PF01321) | ||||
388739.RSK20926_20885 | (PF13582) | ||||
388739.RSK20926_00785 | (PF11927) | ||||
388739.RSK20926_17097 | (PF07045) | ||||
388739.RSK20926_10809 | (PF13409) | ||||
388739.RSK20926_14019 | PF13683 | ||||
388739.RSK20926_11289 | PF13683 | ||||
388739.RSK20926_14034 | (PF01527) | ||||
388739.RSK20926_07748 | (PF07045) | ||||
388739.RSK20926_02077 | (PF07978) | not used | |||
388739.RSK20926_02072 | (PF07978) | not used | |||
388739.RSK20926_01352 | (PF01527) | ||||
388739.RSK20926_11274 | (PF01527) | ||||
388739.RSK20926_08192 | (PF02485) | ||||
388739.RSK20926_02267 | PF13683 | ||||
388739.RSK20926_06577 | (PF02485) | ||||
388739.RSK20926_06572 | (PF03567) | ||||
388739.RSK20926_02489 | (PF00885) | ||||
388739.RSK20926_00520 | (PF01321) | ||||
388739.RSK20926_13864 | (PF10609) | ||||
388739.RSK20926_14239 | (PF09458) | ||||
388739.RSK20926_21649 | PF13683 | ||||
388739.RSK20926_19862 | (PF01321) | ||||
388739.RSK20926_12214 | PF13683 | ||||
388739.RSK20926_08187 | (PF03567) | ||||
388739.RSK20926_15952 | (PF01321) | ||||
388739.RSK20926_06707 | (PF01527) | ||||
388739.RSK20926_12204 | (PF01321) | ||||
388739.RSK20926_19937 | PF13683 | ||||
388739.RSK20926_10264 | (PF07978) | ||||
388739.RSK20926_19212 | (PF07045) | ||||
388739.RSK20926_15782 | (PF10609) | ||||
388739.RSK20926_06602 | (PF01321) | ||||
388739.RSK20926_02252 | (PF01527) | ||||
388739.RSK20926_21375 | (PF01321) | ||||
388739.RSK20926_05097 | (PF13704) | ||||
388739.RSK20926_22159 | (PF13409) | ||||
388739.RSK20926_08662 | (PF09585) | ||||
388739.RSK20926_08667 | (PF09585) | ||||
388739.RSK20926_12229 | (PF01527) | ||||
388739.RSK20926_11204 | (PF01527) | ||||
388739.RSK20926_00055 | (PF10609) | ||||
388739.RSK20926_12679 | (PF01527) | ||||
388739.RSK20926_19902 | (PF01321) | ||||
388739.RSK20926_11219 | PF13683 | ||||
388739.RSK20926_09939 | (PF07978) | ||||
388739.RSK20926_05377 | (PF00909) | ||||
388739.RSK20926_19972 | (PF01527) | ||||
388739.RSK20926_16567 | (PF13704) | ||||
388739.RSK20926_16587 | (PF13704) | ||||
388739.RSK20926_11174 | (PF01321) | ||||
388739.RSK20926_15476 | (PF01527) | ||||
388739.RSK20926_16377 | (PF13704) | ||||
388739.RSK20926_16577 | (PF13704) | ||||
388739.RSK20926_22114 | (PF07045) | ||||
388739.RSK20926_07873 | (PF00885) | ||||
388739.RSK20926_07878 | (PF00885) | ||||
388739.RSK20926_12134 | PF08740 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.125 (9/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.125 (9/8 KEGG proteins)