Effective results for Roseobacter sp. SK209-2-6 (eggnog40)

Summary

Number of putative secreted proteins: 126
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 126 proteins (37 high, 89 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
388739.RSK20926_06362PF16350 (PF08669) (PF01571)(ER)
388739.RSK20926_00275PF16350 (PF08669) (PF01571)(ER); (mitochondrial)
388739.RSK20926_04947PF16350 (PF08669) (PF01571)ER
388739.RSK20926_04942PF16350 (PF08669) (PF01571)ER
388739.RSK20926_18122PF16350 (PF08669) (PF01571)(ER)
388739.RSK20926_18022(PF01571) (PF08669)(mitochondrial)
388739.RSK20926_18127PF16350 (PF08669) (PF01571)(ER)
388739.RSK20926_00800(PF01571) (PF08669)(mitochondrial)
388739.RSK20926_09684PF16350 (PF08669) (PF01571)
388739.RSK20926_01362(PF13276)(mitochondrial); mitochondrial
388739.RSK20926_16887PF16350 (PF08669) (PF01571)
388739.RSK20926_19897PF16350 (PF08669) (PF01571)
388739.RSK20926_08197(PF13704)mitochondrial
388739.RSK20926_10119(PF00909)ER
388739.RSK20926_18592(PF00909)ER
388739.RSK20926_12219(PF13276)mitochondrial
388739.RSK20926_01937(PF00909)ER
388739.RSK20926_08642(PF10517)mitochondrial
388739.RSK20926_21370(PF11927)(mitochondrial)
388739.RSK20926_13059PF16350 (PF08669) (PF01571)
388739.RSK20926_18192(PF03092)(mitochondrial)
388739.RSK20926_17202(PF03567)mitochondrial
388739.RSK20926_01982PF16350 (PF08669) (PF01571)
388739.RSK20926_01212(PF03567)mitochondrial; (mitochondrial)
388739.RSK20926_09674PF16350 (PF08669) (PF01571)
388739.RSK20926_15481PF13683 (PF13276)(mitochondrial)
388739.RSK20926_06132PF16350 (PF08669) (PF01571)
388739.RSK20926_14851(PF01571) (PF08669)(mitochondrial)
388739.RSK20926_21594(PF01571) (PF08669)
388739.RSK20926_22344(PF01527)(mitochondrial)
388739.RSK20926_22349PF13683 (PF13276)
388739.RSK20926_12939(PF01571) (PF08669)
388739.RSK20926_21300(PF01527)(mitochondrial)
388739.RSK20926_19842(PF01571) (PF08669)
388739.RSK20926_14014PF13683 (PF13276)
388739.RSK20926_05472(PF10517)(ER)
388739.RSK20926_14009(PF01527)(mitochondrial)
388739.RSK20926_00805(PF00909)(mitochondrial)
388739.RSK20926_14529(PF01527)(mitochondrial)
388739.RSK20926_02202(PF01527)(mitochondrial)
388739.RSK20926_04997(PF07045)(mitochondrial)
388739.RSK20926_03634(PF01571) (PF08669)
388739.RSK20926_20330(PF01527)(mitochondrial)
388739.RSK20926_20325PF13683 (PF13276)
388739.RSK20926_08202(PF13704)(plastid)
388739.RSK20926_01377(PF01527)(mitochondrial)
388739.RSK20926_06712PF13683 (PF13276)
388739.RSK20926_02599(PF01571) (PF08669)
388739.RSK20926_00640(PF13409)(mitochondrial)
388739.RSK20926_21295PF13683 (PF13276)
388739.RSK20926_01382PF13683 (PF13276)
388739.RSK20926_03254(PF01527)(mitochondrial)
388739.RSK20926_03259PF13683 (PF13276)
388739.RSK20926_20395PF13683 (PF13276)
388739.RSK20926_20390(PF01527)(mitochondrial)
388739.RSK20926_19927(PF01527)(mitochondrial)
388739.RSK20926_19922PF13683 (PF13276)
388739.RSK20926_00865(PF01571) (PF08669)
388739.RSK20926_20360(PF01527)(mitochondrial)
388739.RSK20926_20365PF13683 (PF13276)
388739.RSK20926_07723(PF01571) (PF08669)
388739.RSK20926_12674PF13683 (PF13276)
388739.RSK20926_14534PF13683 (PF13276)
388739.RSK20926_02197PF13683 (PF13276)
388739.RSK20926_19967PF13683 (PF13276)
388739.RSK20926_20067(PF01527)(mitochondrial)
388739.RSK20926_20062PF13683 (PF13276)
388739.RSK20926_05812(PF13409)
388739.RSK20926_13419(PF01321)
388739.RSK20926_20885(PF13582)
388739.RSK20926_00785(PF11927)
388739.RSK20926_17097(PF07045)
388739.RSK20926_10809(PF13409)
388739.RSK20926_14019PF13683
388739.RSK20926_11289PF13683
388739.RSK20926_14034(PF01527)
388739.RSK20926_07748(PF07045)
388739.RSK20926_02077(PF07978)not used
388739.RSK20926_02072(PF07978)not used
388739.RSK20926_01352(PF01527)
388739.RSK20926_11274(PF01527)
388739.RSK20926_08192(PF02485)
388739.RSK20926_02267PF13683
388739.RSK20926_06577(PF02485)
388739.RSK20926_06572(PF03567)
388739.RSK20926_02489(PF00885)
388739.RSK20926_00520(PF01321)
388739.RSK20926_13864(PF10609)
388739.RSK20926_14239(PF09458)
388739.RSK20926_21649PF13683
388739.RSK20926_19862(PF01321)
388739.RSK20926_12214PF13683
388739.RSK20926_08187(PF03567)
388739.RSK20926_15952(PF01321)
388739.RSK20926_06707(PF01527)
388739.RSK20926_12204(PF01321)
388739.RSK20926_19937PF13683
388739.RSK20926_10264(PF07978)
388739.RSK20926_19212(PF07045)
388739.RSK20926_15782(PF10609)
388739.RSK20926_06602(PF01321)
388739.RSK20926_02252(PF01527)
388739.RSK20926_21375(PF01321)
388739.RSK20926_05097(PF13704)
388739.RSK20926_22159(PF13409)
388739.RSK20926_08662(PF09585)
388739.RSK20926_08667(PF09585)
388739.RSK20926_12229(PF01527)
388739.RSK20926_11204(PF01527)
388739.RSK20926_00055(PF10609)
388739.RSK20926_12679(PF01527)
388739.RSK20926_19902(PF01321)
388739.RSK20926_11219PF13683
388739.RSK20926_09939(PF07978)
388739.RSK20926_05377(PF00909)
388739.RSK20926_19972(PF01527)
388739.RSK20926_16567(PF13704)
388739.RSK20926_16587(PF13704)
388739.RSK20926_11174(PF01321)
388739.RSK20926_15476(PF01527)
388739.RSK20926_16377(PF13704)
388739.RSK20926_16577(PF13704)
388739.RSK20926_22114(PF07045)
388739.RSK20926_07873(PF00885)
388739.RSK20926_07878(PF00885)
388739.RSK20926_12134PF08740

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.125 (9/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================