Effective results for Oceanibulbus indolifex HEL-45 (eggnog40)

Summary

Number of putative secreted proteins: 33
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 33 proteins (2 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
391624.OIHEL45_08155				(PF11977)	ER
391624.OIHEL45_05655				(PF13704)	mitochondrial
391624.OIHEL45_09313				(PF03567)	(mitochondrial); mitochondrial
391624.OIHEL45_10673				(PF13704)	mitochondrial
391624.OIHEL45_05660				(PF13704)	mitochondrial
391624.OIHEL45_00537				(PF09994)	mitochondrial
391624.OIHEL45_14345				(PF13704)	(mitochondrial)
391624.OIHEL45_07695				(PF03567)	(plastid)
391624.OIHEL45_17446				(PF13872) (PF13871)
391624.OIHEL45_18136				(PF13872) (PF13871)
391624.OIHEL45_05650				(PF02485)	(plastid)
391624.OIHEL45_16966				(PF03567)	(mitochondrial)
391624.OIHEL45_07125				(PF11160)
391624.OIHEL45_11615				(PF09585)
391624.OIHEL45_08925				(PF09458)
391624.OIHEL45_07225				(PF03567)
391624.OIHEL45_07220				(PF02485)
391624.OIHEL45_14355				(PF13704)
391624.OIHEL45_20776				(PF11160)
391624.OIHEL45_06650				(PF00070)
391624.OIHEL45_06435				(PF03417)
391624.OIHEL45_14350				PF02475
391624.OIHEL45_03435				(PF03417)
391624.OIHEL45_14335				(PF13704)
391624.OIHEL45_16044				(PF03417)
391624.OIHEL45_20231				(PF03567)
391624.OIHEL45_05850				PF02475
391624.OIHEL45_17756				(PF09994)
391624.OIHEL45_00712				(PF13704)
391624.OIHEL45_11570				(PF13704)
391624.OIHEL45_17746				(PF11523)
391624.OIHEL45_11620				(PF09585)
391624.OIHEL45_18161				(PF09994)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================