Metamenu

Effective results for Yersinia enterocolitica subsp. enterocolitica 8081 (eggnog40)

Summary

Number of putative secreted proteins: 533
- Predicted by EffectiveT3: 200 (high confidence), 223 (low confidence)
- Predicted by EffectiveCCBD: 38 within, 18 before, 40 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 26 proteins (1 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
393305.YE3344+ER
393305.YE2091+(mitochondrial)
393305.YE2005(<)ER
393305.YE0399(>)ER
393305.YE1858+ER
393305.YE2253(>)(mitochondrial)
393305.YE1296(PF00328)ER
393305.YE3341(<)ER
393305.YE1612(>)ER
393305.YE1610+(ER); ER
393305.YE2029+ER
393305.YE0243(>)ER
393305.YE0064+(mitochondrial)
393305.YE0982+ER
393305.YE3745(>)ER
393305.YE1451(>)ER
393305.YE1122(PF13276)mitochondrial
393305.YE2899(<)(mitochondrial)
393305.YE1935+mitochondrial
393305.YE1068(<)ER
393305.YE1807+(ER)
393305.YE3605(<)(ER); ER
393305.YE0031(>)mitochondrial
393305.YE2960(>)ER
393305.YE0143+(mitochondrial)
393305.YE2043(>)ER
393305.YE1312+(ER)
393305.YE1145(<)ER
393305.YE0607(<)ER
393305.YE2202+mitochondrial
393305.YE2376+ER
393305.YE3334(>)ER
393305.YE3446+ER
393305.YE0837+ER
393305.YE3212+(ER)
393305.YE1997+mitochondrial; (mitochondrial)
393305.YE2409(>)mitochondrial
393305.YE2629(PF13276)mitochondrial
393305.YE3595+ER
393305.YE2956(PF02112)ER
393305.YE3342+ER
393305.YE1195+ER
393305.YE0960+ER
393305.YE3633+(mitochondrial)
393305.YE3476+mitochondrial
393305.YE3874+mitochondrial; (mitochondrial)
393305.YE1414+mitochondrial
393305.YE2600(PF00328)ER
393305.YE0115++(PF01129)
393305.YE3250(PF13276)(mitochondrial); mitochondrial
393305.YE1885(>)ER
393305.YE1398+ER
393305.YE1869(>)ER
393305.YE3534+(mitochondrial); plastid
393305.YE0130+mitochondrial
393305.YE1719(>)ER
393305.YE2270+mitochondrial
393305.YE2125+ER
393305.YE3830(PF13276)(mitochondrial); mitochondrial
393305.YE3832(PF10142)ER
393305.YE2389(+)mitochondrial
393305.YE1466+(ER)
393305.YE0393(+)mitochondrial; (mitochondrial)
393305.YE0647(<)(ER)
393305.YE2521+plastid
393305.YE2523+plastid
393305.YE2522+plastid
393305.YE0885(+)mitochondrial
393305.YE3196(+)mitochondrial
393305.YE3977(+)(ER)
393305.YE3627(+)ER; (plastid)
393305.YE2356+(plastid)
393305.YE3772(>)(plastid)
393305.YE2683(+)(mitochondrial)
393305.YE1033(+)ER
393305.YE3233+(plastid)
393305.YE3953+(>)
393305.YE2147+(mitochondrial)
393305.YE0337+(PF01490)
393305.YE0942+(plastid)
393305.YE2525++
393305.YE1311+(mitochondrial)
393305.YE0163(>)(ER)
393305.YE1372(+)(ER)
393305.YE0224(+)(mitochondrial)
393305.YE2620+(plastid)
393305.YE3661+(plastid)
393305.YE1368(+)mitochondrial
393305.YE1213+PF00992
393305.YE2325+plastid
393305.YE0592+(mitochondrial)
393305.YE3117(>)(ER)
393305.YE4043(PF05034) (PF07476)
393305.YE0743+(mitochondrial)
393305.YE1641(+)(mitochondrial)
393305.YE2677(>)(mitochondrial)
393305.YE2701+(PF11397)
393305.YE3481(+)(ER); ER
393305.YE0911+(mitochondrial)
393305.YE2280(+)(mitochondrial); (plastid)
393305.YE3621+plastid
393305.YE2059+(<)
393305.YE2470+(mitochondrial)
393305.YE1520(+)ER; (ER)
393305.YE2615+(ER)
393305.YE3520(+)ER; mitochondrial
393305.YE2460+
393305.YE2465+
393305.YE1286+
393305.YE2480+
393305.YE2734+
393305.YE2732+
393305.YE3286+
393305.YE3285(+)plastid
393305.YE2866(>)
393305.YE2860+
393305.YE3773+
393305.YE4081+
393305.YE2806+
393305.YE0704+
393305.YE0897+
393305.YE3035(+)(mitochondrial)
393305.YE2741+
393305.YE2743(>)
393305.YE0099+
393305.YE0255+
393305.YE3294+
393305.YE3293+
393305.YE3726(+)(ER)
393305.YE2104+
393305.YE3507+
393305.YE1473+
393305.YE3509+
393305.YE3618+
393305.YE3614+
393305.YE2814+
393305.YE2922+
393305.YE4183(+)(ER)
393305.YE4189(>)
393305.YE1100+
393305.YE2726+
393305.YE2016+
393305.YE1826(PF13276)
393305.YE2240+
393305.YE2021+
393305.YE3193+
393305.YE3373(+)(plastid)
393305.YE3371+
393305.YE3409+
393305.YE1591(PF13276)
393305.YE4194(PF00102)
393305.YE0477+
393305.YE1057(+)(>)
393305.YE0874+
393305.YE0873+
393305.YE0218+
393305.YE2569+
393305.YE2562+
393305.YE0274+
393305.YE3512+
393305.YE1643A(+)plastid
393305.YE3364+
393305.YE2834+
393305.YE4031+
393305.YE4030+
393305.YE4032+
393305.YE2909+
393305.YE3985+
393305.YE0857A+
393305.YE1768+
393305.YE0990+
393305.YE0861+
393305.YE0868(PF05929)
393305.YE0869+
393305.YE1335+
393305.YE3964+
393305.YE1931(>)
393305.YE1803(PF13276)
393305.YE3771+
393305.YE2682+
393305.YE3793+
393305.YE0682(<)
393305.YE0041+
393305.YE4207(<)
393305.YE1483+
393305.YE0458+
393305.YE1159+
393305.YE3880+
393305.YE1034+
393305.YE3094+
393305.YE2113+
393305.YE3761+
393305.YE3163(>)
393305.YE3169+
393305.YE0321+
393305.YE3549+
393305.YE3238+
393305.YE3234+
393305.YE2161+
393305.YE1973+
393305.YE1146+
393305.YE0846+
393305.YE0606+
393305.YE1950(+)(>)
393305.YE2374+
393305.YE2371+
393305.YE2555+
393305.YE2550+
393305.YE2551+
393305.YE2158(+)(>)
393305.YE3154+
393305.YE3202(>)
393305.YE0924+
393305.YE1295+
393305.YE0151+
393305.YE2531(<)
393305.YE1015(>)
393305.YE0832(PF13276)
393305.YE1948+
393305.YE1942(>)
393305.YE1945+
393305.YE2524(+)(plastid)
393305.YE3143+
393305.YE2415+
393305.YE0304+
393305.YE3323(<)
393305.YE1780+
393305.YE1785+
393305.YE0014+
393305.YE4107(+)(plastid)
393305.YE4106+
393305.YE2890+
393305.YE0957+
393305.YE0488(<)
393305.YE0958+
393305.YE1204+
393305.YE1978+
393305.YE1477+
393305.YE0749+
393305.YE0221(<)
393305.YE2539+
393305.YE1579+
393305.YE2625(PF13276)
393305.YE3689+
393305.YE3044(PF13276)
393305.YE4060(>)
393305.YE1682(PF03031)
393305.YE1361(>)
393305.YE0969+
393305.YE2558+
393305.YE3860+
393305.YE0583+
393305.YE1986+
393305.YE2323(>)
393305.YE2321+
393305.YE2328+not used
393305.YE2183+
393305.YE3696+
393305.YE4119+
393305.YE3057+
393305.YE3674+
393305.YE3584+
393305.YE3583+
393305.YE2920+
393305.YE3475+
393305.YE4126(<)
393305.YE2986+
393305.YE2616+
393305.YE3700+
393305.YE2335(PF00847)
393305.YE2425(>)
393305.YE0379+
393305.YE3642(>)
393305.YE3646(>)
393305.YE1426(+)(mitochondrial)
393305.YE2804+
393305.YE4134+
393305.YE1730+
393305.YE1735+
393305.YE0602(>)
393305.YE4045(PF14330)
393305.YE1645+
393305.YE1367+
393305.YE3086+
393305.YE2455+
393305.YE2293+
393305.YE1509+
393305.YE2704+
393305.YE3253(+)(mitochondrial)
393305.YE0127+
393305.YE0125+
393305.YE0124+
393305.YE1438+
393305.YE2172+
393305.YE2855(+)(plastid)
393305.YE2047+
393305.YE1248+
393305.YE1240+
393305.YE3817+
393305.YE1080+
393305.YE1399+
393305.YE2442+
393305.YE2447+
393305.YE2444+
393305.YE3391+
393305.YE3390+
393305.YE0548(<)
393305.YE0289+
393305.YE3538(PF07720)
393305.YE3536+
393305.YE2759+
393305.YE4123A(+)(mitochondrial)
393305.YE0724+
393305.YE0433(<)
393305.YE0928+
393305.YE3552+
393305.YE2051+
393305.YE2434+
393305.YE1672A(>)
393305.YE2536+
393305.YE0952+
393305.YE2015+
393305.YE2017+
393305.YE3701+
393305.YE2650+
393305.YE1419(+)(ER)
393305.YE1410+
393305.YE2698+
393305.YE1703+
393305.YE4099(>)
393305.YE4098+
393305.YE0733+
393305.YE0730+
393305.YE0735+
393305.YE1677(PF05929)
393305.YE1679+
393305.YE4166+
393305.YE2505+
393305.YE0427+
393305.YE0424(+)(ER)
393305.YE3835(+)(plastid)
393305.YE2045+
393305.YE3566+
393305.YE3564+
393305.YE2397(+)
393305.YE1843(+)
393305.YE3022(+)
393305.YE0398(+)
393305.YE3353(+)
393305.YE1609(+)
393305.YE1275(+)
393305.YE2258(+)
393305.YE1292(+)
393305.YE2038(+)
393305.YE2035(+)
393305.YE2740(+)
393305.YE0076(+)
393305.YE1104(+)
393305.YE1046(+)
393305.YE0883(+)
393305.YE0884(+)
393305.YE2245(+)
393305.YE0776(+)
393305.YE2111(+)
393305.YE1447(+)
393305.YE3836(+)
393305.YE3909(+)
393305.YE4196(+)
393305.YE3993+
393305.YE0478(+)
393305.YE0012A(+)
393305.YE2230(+)
393305.YE4087(+)
393305.YE1457(+)
393305.YE1458(+)
393305.YE0185(+)
393305.YE2767(+)
393305.YE2903(+)
393305.YE2908(+)
393305.YE0995(+)
393305.YE0862(+)
393305.YE1334(+)
393305.YE3969(+)
393305.YE2592(+)
393305.YE3083(+)
393305.YE0266(+)
393305.YE4208(+)
393305.YE2686(+)
393305.YE2179(+)not used
393305.YE2825(+)
393305.YE2919(+)
393305.YE3886(+)
393305.YE0855(+)
393305.YE4012(+)
393305.YE4016(+)
393305.YE1924(+)
393305.YE1921(+)
393305.YE2361(+)
393305.YE2784(+)
393305.YE3430(+)
393305.YE3431(+)
393305.YE2967+
393305.YE1490(+)
393305.YE0147(+)
393305.YE0442(+)
393305.YE0448(+)
393305.YE2039(+)
393305.YE3898(+)
393305.YE3891(+)
393305.YE1005(+)
393305.YE1004(+)not used
393305.YE1009(+)
393305.YE1959(+)
393305.YE2207(+)
393305.YE0334(+)
393305.YE3271(+)
393305.YE1559(+)
393305.YE2831(+)
393305.YE0024(+)
393305.YE3558(+)
393305.YE3208(+)
393305.YE3206(+)
393305.YE1176(+)
393305.YE1303(+)
393305.YE3933(+)
393305.YE3934(+)
393305.YE2303(+)
393305.YE0234(+)
393305.YE1638(+)
393305.YE3148(+)
393305.YE0309(+)
393305.YE3322(+)
393305.YE2955(+)
393305.YE0010(+)
393305.YE2944(+)
393305.YE2941(+)
393305.YE3291(+)
393305.YE1162(+)
393305.YE2895(+)
393305.YE0550(+)
393305.YE0795(+)
393305.YE3859(+)
393305.YE2319(+)
393305.YE2992(+)
393305.YE2999(+)
393305.YE3668(+)
393305.YE2943(+)
393305.YE0006(+)
393305.YE1684(+)
393305.YE1686(+)
393305.YE0170(+)
393305.YE3343(+)
393305.YE4112(+)
393305.YE2958(+)
393305.YE0563(+)
393305.YE0587(+)
393305.YE1984(+)
393305.YE0821(+)
393305.YE3265(+)
393305.YE2181(+)
393305.YE3124(+)
393305.YE2614(+)
393305.YE3692(+)
393305.YE3699(+)
393305.YE2209(+)
393305.YE1565(+)
393305.YE3588(+)
393305.YE0317(+)
393305.YE3279(+)
393305.YE2722(+)
393305.YE0312(+)
393305.YE4122(+)
393305.YE4055(+)
393305.YE0578(+)
393305.YE3870(+)
393305.YE2658(+)
393305.YE1510(+)
393305.YE2194(+)
393305.YE3111(+)
393305.YE2421(+)
393305.YE0372(+)
393305.YE0371(+)
393305.YE2512(+)
393305.YE3246(+)
393305.YE3852(+)
393305.YE0113(+)
393305.YE0114(+)
393305.YE3489(+)
393305.YE2762(+)
393305.YE1731(+)
393305.YE1346(+)
393305.YE0902(+)
393305.YE1298(+)
393305.YE3525(+)
393305.YE2298(+)
393305.YE2674(+)
393305.YE3651(+)
393305.YE3653(+)
393305.YE0293(+)
393305.YE2135(+)
393305.YE0126(+)
393305.YE2173(+)
393305.YE3496(+)
393305.YE1211(+)
393305.YE1659(+)
393305.YE1655(+)
393305.YE1244(+)
393305.YE1392(+)
393305.YE1391(+)
393305.YE1864(+)
393305.YE2719a(+)
393305.YE2282(+)
393305.YE3532(+)
393305.YE0139(+)
393305.YE0132(+)
393305.YE4152(+)
393305.YE1661(+)
393305.YE1665(+)
393305.YE1096(+)
393305.YE1899(+)
393305.YE1876(+)
393305.YE3387(+)
393305.YE2537(+)
393305.YE2725(+)
393305.YE3528(+)
393305.YE2699(+)
393305.YE0860A(+)
393305.YE1709(+)
393305.YE1674(+)
393305.YE1678(+)
393305.YE2053(+)
393305.YE1443(+)
393305.YE3135(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.3 (13/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.875 (7/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================