Effective results for Fusobacterium nucleatum subsp. polymorphum ATCC 10953 (eggnog40)

Summary

Number of putative secreted proteins: 24
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 24 proteins (3 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
393480.FNP_1511(PF03083)(ER)
393480.FNP_1023(PF09511)mitochondrial; (mitochondrial)
393480.FNP_0269(PF08011) (PF09820)
393480.FNP_2204(PF08011) (PF09820)
393480.FNP_2218(PF08011) (PF09820)
393480.FNP_2360(PF08011) (PF09820)
393480.FNP_2172(PF08011) (PF09820)
393480.FNP_0955(PF08011) (PF09820)
393480.FNP_2387(PF08011) (PF09820)
393480.FNP_1169(PF08011) (PF09820)
393480.FNP_0701(PF08011) (PF09820)
393480.FNP_0290(PF08011) (PF09820)
393480.FNP_1404(PF02971) (PF07837)
393480.FNP_1570(PF08011) (PF09820)
393480.FNP_0104PF02987
393480.FNP_1898(PF03083)
393480.FNP_1809PF06176
393480.FNP_1132(PF13086)
393480.FNP_0881(PF13086)
393480.FNP_0542PF06176
393480.FNP_1844(PF06414)
393480.FNP_0367(PF06414)
393480.FNP_2030(PF13086)
393480.FNP_1175(PF01991)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================