Metamenu

Effective results for Shewanella pealeana ATCC 700345 (eggnog40)

Summary

Number of putative secreted proteins: 125
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 30 eukaryotic-like domains, contained in 125 proteins (3 high, 122 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
398579.Spea_3851(PF07662) (PF01773)ER
398579.Spea_2904(PF14864) (PF14863)ER
398579.Spea_3405(PF07662) (PF01773)ER
398579.Spea_1717(PF07662) (PF01773)ER
398579.Spea_1231(PF14864) (PF14863)ER; mitochondrial
398579.Spea_2763(PF07662) (PF01773)ER
398579.Spea_0634(PF07662) (PF01773)ER
398579.Spea_3050(PF07662) (PF01773)ER
398579.Spea_2853(PF03553)ER
398579.Spea_0775(PF00375)(ER)
398579.Spea_3082(PF00665)mitochondrial
398579.Spea_2949(PF00375)ER
398579.Spea_2842(PF10142)ER
398579.Spea_2440(PF02600)(mitochondrial)
398579.Spea_3259(PF03553)ER
398579.Spea_1017(PF00665)mitochondrial
398579.Spea_1330(PF00375)ER
398579.Spea_0827(PF01346)ER
398579.Spea_0681(PF00665)mitochondrial
398579.Spea_4070(PF00665)mitochondrial
398579.Spea_3425(PF03553)ER
398579.Spea_0338(PF00221)ER
398579.Spea_0799(PF00665)mitochondrial
398579.Spea_2338(PF09317)ER
398579.Spea_2330(PF00665)mitochondrial
398579.Spea_4027(PF05935)ER
398579.Spea_4022(PF05935)ER
398579.Spea_3213(PF00375)(ER)
398579.Spea_1206(PF00375)ER
398579.Spea_0314(PF03553)ER
398579.Spea_0481(PF01346)ER
398579.Spea_4165(PF03553)ER; (ER)
398579.Spea_3914(PF02600)ER
398579.Spea_2636(PF13402)ER
398579.Spea_0923(PF01346)ER
398579.Spea_0675(PF00849)mitochondrial
398579.Spea_3168(PF02460)ER
398579.Spea_1532(PF00375)ER; (ER)
398579.Spea_3575(PF00221)mitochondrial; ER
398579.Spea_0598(PF00245)ER
398579.Spea_2575(PF03553)ER
398579.Spea_2573(PF00665)mitochondrial
398579.Spea_1144(PF00245)ER
398579.Spea_2393(PF09317)ER
398579.Spea_0899(PF13402)ER
398579.Spea_0388(PF00883)ER
398579.Spea_1570(PF00375)ER
398579.Spea_1622(PF00665)mitochondrial
398579.Spea_1977(PF00665)mitochondrial
398579.Spea_0719(PF00375)ER
398579.Spea_0572(PF00665)mitochondrial
398579.Spea_0989(PF00245)ER; (ER)
398579.Spea_1584(PF05935)ER
398579.Spea_0505(PF01346)ER
398579.Spea_1514PF13854(plastid)
398579.Spea_1726(PF14864) (PF14863)
398579.Spea_2295(PF03199) (PF03917)
398579.Spea_2759(PF00883)(plastid)
398579.Spea_1145(PF00245)(ER)
398579.Spea_0502PF16865(mitochondrial)
398579.Spea_1648(PF00849)
398579.Spea_3467(PF02371)
398579.Spea_1916(PF00665)
398579.Spea_4213(PF02371)
398579.Spea_2932(PF02371)
398579.Spea_2847(PF02371)
398579.Spea_1653(PF02371)
398579.Spea_3257(PF00665)
398579.Spea_3090(PF00883)
398579.Spea_2479PF01536
398579.Spea_3894(PF00221)
398579.Spea_1464(PF00375)
398579.Spea_1467(PF00849)
398579.Spea_0759(PF00849)
398579.Spea_0222(PF02371)
398579.Spea_1323(PF04325)
398579.Spea_2466(PF00665)
398579.Spea_1495(PF00665)
398579.Spea_2093(PF00849)
398579.Spea_3234(PF04325)
398579.Spea_2891(PF00849)
398579.Spea_0024(PF00665)
398579.Spea_2536(PF00849)
398579.Spea_0015(PF00665)
398579.Spea_4024(PF02600)
398579.Spea_4029(PF02600)
398579.Spea_3214(PF00849)
398579.Spea_0475(PF03553)
398579.Spea_2503(PF00849)
398579.Spea_0910(PF00883)
398579.Spea_2351(PF12344)
398579.Spea_4168(PF00221)
398579.Spea_3176(PF00849)
398579.Spea_2423(PF00665)
398579.Spea_3917(PF00375)
398579.Spea_2182(PF12392)
398579.Spea_0677(PF03553)
398579.Spea_2291(PF12344)
398579.Spea_0459(PF04325)
398579.Spea_3166(PF00849)
398579.Spea_3161(PF02371)
398579.Spea_3017(PF00849)
398579.Spea_4108(PF00849)
398579.Spea_3391(PF04325)
398579.Spea_3976(PF02371)
398579.Spea_1239(PF00375)
398579.Spea_1234(PF09317)
398579.Spea_3369(PF00221)
398579.Spea_0549(PF00849)
398579.Spea_3707(PF00665)
398579.Spea_1773(PF05548)
398579.Spea_0738(PF00849)
398579.Spea_0554(PF16983)
398579.Spea_1170(PF02371)
398579.Spea_0700(PF00883)
398579.Spea_1614(PF00665)
398579.Spea_0889(PF00849)
398579.Spea_0406(PF02371)
398579.Spea_0403(PF00665)
398579.Spea_1114(PF02371)
398579.Spea_2728(PF00849)
398579.Spea_3528(PF03266)
398579.Spea_0764(PF12392)
398579.Spea_3077(PF01346)
398579.Spea_1106(PF00665)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.875 (7/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================