Effective results for Rhodospirillum centenum SW (eggnog40)

Summary

Number of putative secreted proteins: 41
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 41 proteins (0 high, 41 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
414684.RC1_0770				(PF13524)	(ER)
414684.RC1_0290				(PF09423)	(ER)
414684.RC1_4042				(PF09423)	ER
414684.RC1_2079				(PF03209)	ER
414684.RC1_0648				(PF10013)	(mitochondrial)
414684.RC1_4023				(PF13524)	(mitochondrial)
414684.RC1_0246				(PF09423)	(mitochondrial); mitochondrial
414684.RC1_1331				(PF03981)	mitochondrial
414684.RC1_2110				(PF03209)	(ER); (mitochondrial)
414684.RC1_2391				(PF09423)	(mitochondrial)
414684.RC1_2732				(PF13592)	(plastid)
414684.RC1_3676				(PF13592)	(plastid)
414684.RC1_0484				(PF13592)	(plastid)
414684.RC1_0531				(PF13524)	(ER)
414684.RC1_1731				(PF13592)	(plastid)
414684.RC1_0148				(PF04325)	not used
414684.RC1_4062				(PF00101)
414684.RC1_3906				(PF00028)
414684.RC1_0026				(PF09423)
414684.RC1_3132				(PF00028)
414684.RC1_4022				(PF13524)
414684.RC1_0011				(PF00028)
414684.RC1_3224				(PF08446)
414684.RC1_0240				(PF00101)
414684.RC1_1689				(PF13592)
414684.RC1_0519				(PF14701)
414684.RC1_4001				(PF00028)
414684.RC1_0859				(PF09423)
414684.RC1_0855				(PF04325)
414684.RC1_2123				(PF12513)
414684.RC1_0530				(PF13524)
414684.RC1_3803				(PF08446)
414684.RC1_0532				(PF13524)
414684.RC1_2583				(PF13661)
414684.RC1_2568				(PF04325)	not used
414684.RC1_2365				(PF09731)
414684.RC1_3358				(PF08446)
414684.RC1_0033				(PF03981)
414684.RC1_0941				(PF13592)
414684.RC1_1857				(PF04325)	not used
414684.RC1_1851				(PF04325)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================