Effective results for Methylobacterium populi BJ001 (eggnog40)

Summary

Number of putative secreted proteins: 210
- Predicted by T4SEpre: 90
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 141 proteins (0 high, 141 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
441620.Mpop_4404(PF04577)(mitochondrial)
441620.Mpop_5311+(mitochondrial)
441620.Mpop_0966(PF03602)(ER)
441620.Mpop_3549+(mitochondrial)
441620.Mpop_2309+mitochondrial
441620.Mpop_1762+ER
441620.Mpop_1634+mitochondrial; (mitochondrial)
441620.Mpop_5416(PF08447)ER
441620.Mpop_0548+ER
441620.Mpop_0235+ER
441620.Mpop_1853+mitochondrial
441620.Mpop_0680(PF06912)(ER)
441620.Mpop_0684(PF02655)(mitochondrial)
441620.Mpop_5356(PF03209)ER
441620.Mpop_4320(PF03602)(mitochondrial)
441620.Mpop_2340(PF08447)mitochondrial; (mitochondrial)
441620.Mpop_1984(PF08447)ER
441620.Mpop_0589(PF03022)mitochondrial
441620.Mpop_5366(PF03209)ER
441620.Mpop_3352(PF11911)ER
441620.Mpop_2532(PF00829)mitochondrial; (mitochondrial)
441620.Mpop_0864+mitochondrial
441620.Mpop_2240+ER
441620.Mpop_3795(PF08447)(mitochondrial); plastid
441620.Mpop_1993(PF08447)ER
441620.Mpop_5378+(mitochondrial); mitochondrial
441620.Mpop_3941+ER
441620.Mpop_2168+ER
441620.Mpop_3439+ER
441620.Mpop_1279(PF13641)(ER)
441620.Mpop_0273(PF13641)ER
441620.Mpop_3630(PF13641)ER
441620.Mpop_0819+ER
441620.Mpop_0037+ER
441620.Mpop_0031+ER
441620.Mpop_5373+(mitochondrial)
441620.Mpop_2047+(mitochondrial)
441620.Mpop_0285(PF13641)(mitochondrial); plastid
441620.Mpop_1934+ER
441620.Mpop_4294+(mitochondrial)
441620.Mpop_3279(PF03022)ER
441620.Mpop_5047+ER
441620.Mpop_3269(PF13427)(mitochondrial)
441620.Mpop_1132(PF10908)ER
441620.Mpop_0514(PF08447)(mitochondrial)
441620.Mpop_0556+(mitochondrial)
441620.Mpop_2169+ER
441620.Mpop_3372+(ER); (mitochondrial)
441620.Mpop_0420+ER; (ER)
441620.Mpop_1035(PF03022)ER
441620.Mpop_1212+mitochondrial
441620.Mpop_0769(PF13641)(mitochondrial)
441620.Mpop_5272+ER
441620.Mpop_3209(PF01774)mitochondrial; (mitochondrial)
441620.Mpop_3203(PF01730)ER
441620.Mpop_5071(PF00011)(mitochondrial)
441620.Mpop_0149(PF08447)(plastid)
441620.Mpop_0146(PF08447)(plastid)
441620.Mpop_4205(PF03022)(plastid)
441620.Mpop_1896+(mitochondrial)
441620.Mpop_1438+(mitochondrial)
441620.Mpop_0433(PF00011)(mitochondrial)
441620.Mpop_0434+(plastid)
441620.Mpop_4108(PF08447)(mitochondrial)
441620.Mpop_3725(PF00011)(mitochondrial)
441620.Mpop_0642+(PF11338)
441620.Mpop_3382+(plastid)
441620.Mpop_1728(PF08447)(ER)
441620.Mpop_5109(PF08447)(ER)
441620.Mpop_3679(PF00011)(mitochondrial)
441620.Mpop_1316+(plastid)
441620.Mpop_2553(PF13427)(ER)
441620.Mpop_4651+(mitochondrial)
441620.Mpop_0578+
441620.Mpop_1684(PF11911)
441620.Mpop_0157(PF00872)
441620.Mpop_0150(PF08447)
441620.Mpop_5268(PF05532)
441620.Mpop_5312+
441620.Mpop_4226(PF00872)
441620.Mpop_2834(PF14701)
441620.Mpop_3241+
441620.Mpop_0944(PF00872)
441620.Mpop_0892+
441620.Mpop_4986+
441620.Mpop_0564(PF13641)
441620.Mpop_0144(PF08447)
441620.Mpop_0094(PF08447)
441620.Mpop_0098(PF08447)
441620.Mpop_3316+
441620.Mpop_2974(PF13632)
441620.Mpop_5418(PF08447)
441620.Mpop_2379(PF08892)
441620.Mpop_0511+
441620.Mpop_1777+
441620.Mpop_1173(PF13641)
441620.Mpop_0311+
441620.Mpop_0135(PF06745)
441620.Mpop_3966(PF00872)
441620.Mpop_3962(PF13632)
441620.Mpop_2818+
441620.Mpop_2784+
441620.Mpop_2786+
441620.Mpop_1860+
441620.Mpop_1142(PF10908)
441620.Mpop_0308(PF02705)
441620.Mpop_4321+
441620.Mpop_3791(PF08447)
441620.Mpop_3790+
441620.Mpop_4100(PF03988)
441620.Mpop_4102(PF03988)
441620.Mpop_4105(PF08447)
441620.Mpop_2170+
441620.Mpop_3779(PF00872)
441620.Mpop_2350(PF04577)
441620.Mpop_2423(PF05532)
441620.Mpop_4922(PF00829)
441620.Mpop_4591(PF06745)
441620.Mpop_5357(PF03602)
441620.Mpop_3160+
441620.Mpop_0851(PF08447)
441620.Mpop_2239(PF02705)
441620.Mpop_0540+
441620.Mpop_1575+
441620.Mpop_4776(PF08447)
441620.Mpop_4777(PF13641)
441620.Mpop_3753(PF00011)
441620.Mpop_3594(PF08447)
441620.Mpop_3796(PF11338)
441620.Mpop_1449(PF08447)
441620.Mpop_0266(PF00872)
441620.Mpop_4103(PF03988)
441620.Mpop_1840(PF13641)
441620.Mpop_0710(PF12513)
441620.Mpop_0870+
441620.Mpop_3724(PF00011)
441620.Mpop_1052(PF05532)
441620.Mpop_1053(PF05532)
441620.Mpop_1055(PF05532)
441620.Mpop_1616(PF00011)
441620.Mpop_2639+
441620.Mpop_1297(PF08447)
441620.Mpop_4368(PF08447)
441620.Mpop_1781(PF02655)
441620.Mpop_0704(PF08447)
441620.Mpop_4031(PF00872)
441620.Mpop_0801(PF08447)
441620.Mpop_2394(PF00872)
441620.Mpop_3420(PF13641)
441620.Mpop_3429(PF06912)
441620.Mpop_0029+
441620.Mpop_5399(PF08447)
441620.Mpop_2096(PF05532)
441620.Mpop_4734(PF08447)
441620.Mpop_1492(PF04577)
441620.Mpop_0036+
441620.Mpop_0039(PF06745)
441620.Mpop_0038(PF08447)
441620.Mpop_5120(PF01774)
441620.Mpop_5376+
441620.Mpop_3714(PF00872)
441620.Mpop_2916(PF06912)
441620.Mpop_3849+
441620.Mpop_4830(PF04577)
441620.Mpop_4618+
441620.Mpop_3892(PF08447)
441620.Mpop_3092+
441620.Mpop_2702+
441620.Mpop_4267(PF12200)
441620.Mpop_4069(PF00872)
441620.Mpop_2290(PF06912)
441620.Mpop_3500(PF08447)
441620.Mpop_3501(PF13641)
441620.Mpop_3502(PF13632)
441620.Mpop_2055(PF08447)
441620.Mpop_2952+
441620.Mpop_4182(PF00872)
441620.Mpop_3683(PF04800)
441620.Mpop_5067(PF00872)
441620.Mpop_3882(PF00011)
441620.Mpop_4078(PF06912)
441620.Mpop_4977+
441620.Mpop_2336+
441620.Mpop_4982(PF01442)
441620.Mpop_2848+
441620.Mpop_1138(PF01774)
441620.Mpop_1131(PF08447)
441620.Mpop_1130(PF08447)
441620.Mpop_1643(PF02705)
441620.Mpop_1134(PF01730)
441620.Mpop_5021(PF08447)
441620.Mpop_0192+
441620.Mpop_5118(PF01730)
441620.Mpop_0172(PF08447)
441620.Mpop_0179(PF02705)
441620.Mpop_3857(PF02655)
441620.Mpop_0134(PF08447)
441620.Mpop_0983(PF10013)not used
441620.Mpop_5055(PF08447)
441620.Mpop_0343(PF00872)
441620.Mpop_0507(PF08447)
441620.Mpop_0508(PF08447)
441620.Mpop_0164(PF08892)
441620.Mpop_0169(PF12200)
441620.Mpop_4250(PF04577)
441620.Mpop_3207+
441620.Mpop_1619+
441620.Mpop_3331(PF04800)
441620.Mpop_3680(PF00011)
441620.Mpop_3537(PF13641)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.5 (5/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================