Effective results for Geobacter sp. M21 (eggnog40)
Summary
Number of putative secreted proteins: 266
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 37 eukaryotic-like domains, contained in 266 proteins (1 high, 265 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 443144.GM21_0614 | (PF13188) (PF00989) (PF08448) | ER | |||
| 443144.GM21_1382 | (PF02754) (PF13237) | (ER) | |||
| 443144.GM21_0944 | (PF02310) (PF04055) | (ER) | |||
| 443144.GM21_0533 | (PF13188) (PF08448) | ER | |||
| 443144.GM21_1035 | (PF02754) (PF13237) | ER | |||
| 443144.GM21_0859 | (PF02310) (PF04055) | (ER); (mitochondrial) | |||
| 443144.GM21_3552 | (PF02310) (PF04055) | (ER) | |||
| 443144.GM21_3556 | (PF02310) (PF04055) | (mitochondrial) | |||
| 443144.GM21_0064 | (PF13188) (PF00989) | ER | |||
| 443144.GM21_2131 | (PF02754) (PF13237) | ER | |||
| 443144.GM21_2001 | (PF00989) (PF08448) | (ER) | |||
| 443144.GM21_2791 | (PF02754) (PF13237) | (ER) | |||
| 443144.GM21_1061 | (PF16199) (PF04055) | (ER) | |||
| 443144.GM21_1798 | (PF13188) (PF08448) | ER | |||
| 443144.GM21_2079 | (PF00989) (PF08448) | ER | |||
| 443144.GM21_3535 | (PF02310) (PF04055) | ER | |||
| 443144.GM21_0974 | (PF08448) | ER | |||
| 443144.GM21_3109 | (PF01436) | ER | |||
| 443144.GM21_0741 | (PF08448) | (ER) | |||
| 443144.GM21_4044 | (PF00989) | ER | |||
| 443144.GM21_3243 | (PF08448) | ER | |||
| 443144.GM21_3112 | (PF01436) | ER | |||
| 443144.GM21_3116 | (PF08448) | mitochondrial | |||
| 443144.GM21_1192 | (PF01436) | ER | |||
| 443144.GM21_0008 | (PF00989) | ER | |||
| 443144.GM21_4052 | (PF05140) | ER | |||
| 443144.GM21_3587 | (PF02416) | ER | |||
| 443144.GM21_1566 | (PF08448) | ER | |||
| 443144.GM21_0548 | (PF04187) | ER | |||
| 443144.GM21_2714 | (PF02754) | ER | |||
| 443144.GM21_2715 | (PF00766) (PF12838) (PF01012) | ||||
| 443144.GM21_2151 | (PF00989) | (ER) | |||
| 443144.GM21_2568 | (PF01715) | (ER) | |||
| 443144.GM21_1815 | (PF04187) | ER | |||
| 443144.GM21_1033 | (PF13188) (PF00989) (PF08448) | ||||
| 443144.GM21_0039 | (PF01814) | ER | |||
| 443144.GM21_3441 | (PF13436) | ER | |||
| 443144.GM21_3159 | (PF01436) | mitochondrial | |||
| 443144.GM21_2778 | (PF08448) | mitochondrial | |||
| 443144.GM21_0466 | (PF08448) | ER | |||
| 443144.GM21_3364 | (PF02310) (PF04055) | (ER) | |||
| 443144.GM21_3162 | (PF01436) | mitochondrial | |||
| 443144.GM21_3557 | (PF05140) | (ER) | |||
| 443144.GM21_3771 | (PF06884) | ER | |||
| 443144.GM21_0662 | (PF13188) | (ER) | |||
| 443144.GM21_0882 | (PF04055) | (mitochondrial) | |||
| 443144.GM21_2747 | (PF08448) | ER | |||
| 443144.GM21_2925 | (PF02754) | ER | |||
| 443144.GM21_1074 | (PF01058) | (mitochondrial) | |||
| 443144.GM21_3577 | (PF04055) | (ER) | |||
| 443144.GM21_3354 | (PF04187) | ER | |||
| 443144.GM21_2488 | (PF04187) | ER | |||
| 443144.GM21_0244 | (PF00549) | (mitochondrial) | |||
| 443144.GM21_1201 | (PF02416) | ER | |||
| 443144.GM21_3210 | (PF11028) | ER | |||
| 443144.GM21_2498 | PF14874 | ER | |||
| 443144.GM21_2785 | (PF02754) | ER | |||
| 443144.GM21_1272 | (PF00989) | ER | |||
| 443144.GM21_1273 | (PF08448) | ER | |||
| 443144.GM21_0257 | (PF13188) | ER | |||
| 443144.GM21_2068 | (PF08448) | ER | |||
| 443144.GM21_1648 | (PF02310) (PF04055) | (plastid) | |||
| 443144.GM21_0132 | (PF02416) | ER | |||
| 443144.GM21_0919 | (PF08448) | ER | |||
| 443144.GM21_1634 | (PF08448) | ER | |||
| 443144.GM21_3221 | (PF08448) | ER | |||
| 443144.GM21_1629 | (PF11028) | ER | |||
| 443144.GM21_2189 | (PF01739) | (mitochondrial) | |||
| 443144.GM21_2523 | (PF02310) (PF04055) | ||||
| 443144.GM21_1283 | (PF08448) | (mitochondrial) | |||
| 443144.GM21_0485 | (PF02550) (PF13336) | ||||
| 443144.GM21_2097 | (PF13188) (PF00989) | ||||
| 443144.GM21_2949 | (PF00766) (PF01012) | ||||
| 443144.GM21_1384 | (PF00766) (PF01012) | ||||
| 443144.GM21_2409 | (PF13188) (PF00989) | ||||
| 443144.GM21_1370 | (PF02550) (PF13336) | ||||
| 443144.GM21_1959 | (PF02416) | ER; not used | |||
| 443144.GM21_3853 | (PF16199) (PF04055) | ||||
| 443144.GM21_0842 | (PF02550) (PF13336) | ||||
| 443144.GM21_2362 | (PF01739) | (mitochondrial) | |||
| 443144.GM21_2824 | (PF02550) (PF13336) | ||||
| 443144.GM21_0860 | (PF04055) | (mitochondrial) | |||
| 443144.GM21_3096 | (PF13188) (PF00989) | ||||
| 443144.GM21_3382 | (PF02310) (PF04055) | ||||
| 443144.GM21_2839 | (PF02416) | ER; not used | |||
| 443144.GM21_1905 | (PF03144) | (mitochondrial) | |||
| 443144.GM21_3553 | (PF02310) (PF04055) | ||||
| 443144.GM21_3555 | (PF02310) (PF04055) | ||||
| 443144.GM21_2931 | (PF04055) | (mitochondrial) | |||
| 443144.GM21_0664 | (PF16199) (PF04055) | ||||
| 443144.GM21_3982 | (PF02550) (PF13336) | ||||
| 443144.GM21_2927 | (PF00766) (PF01012) | ||||
| 443144.GM21_2815 | (PF02550) (PF13336) | ||||
| 443144.GM21_0076 | (PF02310) (PF04055) | ||||
| 443144.GM21_2132 | (PF00766) (PF01012) | ||||
| 443144.GM21_2862 | (PF02550) (PF13336) | ||||
| 443144.GM21_2783 | (PF00766) (PF01012) | ||||
| 443144.GM21_2786 | (PF00766) (PF01012) | ||||
| 443144.GM21_3236 | (PF02310) (PF04055) | ||||
| 443144.GM21_3231 | (PF02310) (PF04055) | ||||
| 443144.GM21_2070 | (PF00989) (PF08448) | ||||
| 443144.GM21_3533 | (PF02310) (PF04055) | ||||
| 443144.GM21_1128 | (PF02416) | ER; not used | |||
| 443144.GM21_1759 | (PF12038) | ||||
| 443144.GM21_0576 | (PF02754) | ||||
| 443144.GM21_3104 | (PF00989) | ||||
| 443144.GM21_3050 | (PF12838) | ||||
| 443144.GM21_2456 | (PF02873) | ||||
| 443144.GM21_1295 | (PF08448) | ||||
| 443144.GM21_1298 | (PF02754) | ||||
| 443144.GM21_1762 | (PF08448) | ||||
| 443144.GM21_1761 | (PF04055) | ||||
| 443144.GM21_1984 | (PF01814) | ||||
| 443144.GM21_0219 | (PF04055) | ||||
| 443144.GM21_1614 | (PF04055) | ||||
| 443144.GM21_0563 | (PF12838) | ||||
| 443144.GM21_0560 | (PF04055) | ||||
| 443144.GM21_4137 | (PF04055) | ||||
| 443144.GM21_0106 | (PF12838) | ||||
| 443144.GM21_3068 | (PF01814) | ||||
| 443144.GM21_2086 | (PF08448) | ||||
| 443144.GM21_2558 | (PF04055) | ||||
| 443144.GM21_2950 | (PF01012) | ||||
| 443144.GM21_0777 | (PF04055) | ||||
| 443144.GM21_0009 | (PF08448) | ||||
| 443144.GM21_0550 | (PF08448) | ||||
| 443144.GM21_4125 | (PF12838) | ||||
| 443144.GM21_0483 | (PF08448) | ||||
| 443144.GM21_0399 | (PF04055) | ||||
| 443144.GM21_3722 | (PF08448) | ||||
| 443144.GM21_2095 | (PF13281) | ||||
| 443144.GM21_1162 | (PF04055) | ||||
| 443144.GM21_2898 | (PF00989) | ||||
| 443144.GM21_1366 | (PF08448) | ||||
| 443144.GM21_0762 | (PF01739) | ||||
| 443144.GM21_1383 | (PF01012) | ||||
| 443144.GM21_0549 | (PF08448) | ||||
| 443144.GM21_0010 | (PF13188) | ||||
| 443144.GM21_0014 | (PF04055) | ||||
| 443144.GM21_0160 | (PF01058) | ||||
| 443144.GM21_0493 | (PF00989) | ||||
| 443144.GM21_0491 | (PF03144) | ||||
| 443144.GM21_3281 | (PF01715) | ||||
| 443144.GM21_3285 | (PF00989) | ||||
| 443144.GM21_1118 | (PF00989) | ||||
| 443144.GM21_2716 | (PF01012) | ||||
| 443144.GM21_2152 | (PF00989) | ||||
| 443144.GM21_1174 | (PF12838) | ||||
| 443144.GM21_1666 | (PF01814) | ||||
| 443144.GM21_2570 | (PF04055) | ||||
| 443144.GM21_1375 | (PF02310) | ||||
| 443144.GM21_1393 | (PF05189) | ||||
| 443144.GM21_0029 | (PF12838) | ||||
| 443144.GM21_4102 | (PF01814) | ||||
| 443144.GM21_3455 | (PF04055) | ||||
| 443144.GM21_1951 | (PF04055) | ||||
| 443144.GM21_3146 | (PF00989) | ||||
| 443144.GM21_2368 | (PF00989) | ||||
| 443144.GM21_1548 | (PF02310) | ||||
| 443144.GM21_2965 | (PF04055) | ||||
| 443144.GM21_1812 | (PF00989) | ||||
| 443144.GM21_1032 | (PF03144) | ||||
| 443144.GM21_1720 | (PF01739) | ||||
| 443144.GM21_0632 | (PF04055) | ||||
| 443144.GM21_0141 | (PF04055) | ||||
| 443144.GM21_4004 | (PF12838) | ||||
| 443144.GM21_0030 | (PF02754) | ||||
| 443144.GM21_0034 | (PF03144) | ||||
| 443144.GM21_4009 | (PF01058) | ||||
| 443144.GM21_3930 | (PF00989) | ||||
| 443144.GM21_3626 | (PF02915) | ||||
| 443144.GM21_2914 | (PF01058) | ||||
| 443144.GM21_1805 | (PF08448) | ||||
| 443144.GM21_1025 | (PF04055) | ||||
| 443144.GM21_0192 | (PF12838) | ||||
| 443144.GM21_0510 | (PF02873) | ||||
| 443144.GM21_4019 | (PF03144) | ||||
| 443144.GM21_0218 | (PF04055) | ||||
| 443144.GM21_3361 | (PF00989) | ||||
| 443144.GM21_4048 | (PF00025) | ||||
| 443144.GM21_2164 | (PF04055) | ||||
| 443144.GM21_2167 | (PF04055) | ||||
| 443144.GM21_2618 | (PF01739) | ||||
| 443144.GM21_1232 | (PF01814) | ||||
| 443144.GM21_1123 | (PF01058) | ||||
| 443144.GM21_1839 | (PF01739) | ||||
| 443144.GM21_1908 | (PF00025) | ||||
| 443144.GM21_0472 | (PF13188) | ||||
| 443144.GM21_4022 | (PF02915) | ||||
| 443144.GM21_4027 | (PF01739) | ||||
| 443144.GM21_3958 | (PF01814) | ||||
| 443144.GM21_3171 | (PF04055) | ||||
| 443144.GM21_3086 | (PF02915) | ||||
| 443144.GM21_1962 | (PF01814) | ||||
| 443144.GM21_1969 | (PF01814) | ||||
| 443144.GM21_2242 | (PF12838) | ||||
| 443144.GM21_2248 | (PF01058) | ||||
| 443144.GM21_2807 | (PF12838) | ||||
| 443144.GM21_2808 | (PF02754) | ||||
| 443144.GM21_1821 | (PF04055) | ||||
| 443144.GM21_1825 | (PF00989) | ||||
| 443144.GM21_1828 | (PF04055) | ||||
| 443144.GM21_0262 | (PF02310) | ||||
| 443144.GM21_1041 | (PF00549) | ||||
| 443144.GM21_1040 | (PF00549) | ||||
| 443144.GM21_1910 | (PF02915) | ||||
| 443144.GM21_3966 | (PF08448) | ||||
| 443144.GM21_3346 | (PF04055) | ||||
| 443144.GM21_3343 | (PF03144) | ||||
| 443144.GM21_2103 | (PF13188) | ||||
| 443144.GM21_2327 | (PF03144) | ||||
| 443144.GM21_2740 | (PF07884) | ||||
| 443144.GM21_2743 | (PF07884) | ||||
| 443144.GM21_2928 | (PF01012) | ||||
| 443144.GM21_2818 | (PF04055) | ||||
| 443144.GM21_2816 | (PF08448) | ||||
| 443144.GM21_0673 | (PF13237) | ||||
| 443144.GM21_1075 | (PF08448) | ||||
| 443144.GM21_3971 | (PF12838) | ||||
| 443144.GM21_3973 | (PF01058) | ||||
| 443144.GM21_2139 | (PF12838) | ||||
| 443144.GM21_2133 | (PF01012) | ||||
| 443144.GM21_2135 | (PF04055) | ||||
| 443144.GM21_2264 | (PF00989) | ||||
| 443144.GM21_2869 | (PF08448) | ||||
| 443144.GM21_0245 | (PF00549) | ||||
| 443144.GM21_0640 | (PF01739) | ||||
| 443144.GM21_0423 | (PF13188) | ||||
| 443144.GM21_3218 | (PF01739) | ||||
| 443144.GM21_3031 | (PF01814) | ||||
| 443144.GM21_3032 | (PF01814) | ||||
| 443144.GM21_2738 | (PF07884) | ||||
| 443144.GM21_2789 | (PF00549) | ||||
| 443144.GM21_2788 | (PF00549) | ||||
| 443144.GM21_2784 | (PF01012) | ||||
| 443144.GM21_2787 | (PF01012) | ||||
| 443144.GM21_2309 | (PF04055) | ||||
| 443144.GM21_2870 | (PF04055) | ||||
| 443144.GM21_1276 | (PF08448) | ||||
| 443144.GM21_1278 | (PF01739) | ||||
| 443144.GM21_3331 | (PF03144) | ||||
| 443144.GM21_3330 | (PF03144) | ||||
| 443144.GM21_0921 | (PF02915) | ||||
| 443144.GM21_2461 | (PF04055) | ||||
| 443144.GM21_1467 | (PF01814) | ||||
| 443144.GM21_1466 | (PF02915) | ||||
| 443144.GM21_1865 | (PF03144) | ||||
| 443144.GM21_1314 | (PF02754) | ||||
| 443144.GM21_1263 | (PF08448) | ||||
| 443144.GM21_1793 | (PF12899) | ||||
| 443144.GM21_1080 | (PF02873) | ||||
| 443144.GM21_1880 | (PF02915) | ||||
| 443144.GM21_3232 | (PF08392) | ||||
| 443144.GM21_3520 | (PF05140) | ||||
| 443144.GM21_0918 | (PF00989) | ||||
| 443144.GM21_1416 | (PF02915) | ||||
| 443144.GM21_2502 | (PF13188) | ||||
| 443144.GM21_2853 | (PF12838) | ||||
| 443144.GM21_1320 | (PF02754) | ||||
| 443144.GM21_0129 | (PF01814) | ||||
| 443144.GM21_3538 | (PF05140) | ||||
| 443144.GM21_3820 | (PF04055) | ||||
| 443144.GM21_1311 | (PF02915) | ||||
| 443144.GM21_3826 | (PF04765) | ||||
| 443144.GM21_1404 | (PF08448) | ||||
| 443144.GM21_1539 | (PF01814) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 0.375 (3/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.375 (3/8 KEGG proteins)
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