Effective results for Atopobium vaginae DSM 15829 (eggnog40)
Summary
Number of putative secreted proteins: 362
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 166 eukaryotic-like domains, contained in 362 proteins (53 high, 309 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 525256.AvagD15_010100000421 | (PF04561) (PF10385) (PF04565) (PF00562) (PF04563) (PF04560) | ||||
| 525256.AvagD15_010100000426 | (PF04983) (PF04998) PF03118 (PF04997) (PF00623) (PF05000) | ||||
| 525256.HMPREF0091_10237 | (PF04983) (PF04998) PF03118 (PF04997) (PF00623) (PF05000) | ||||
| 525256.HMPREF0091_10236 | (PF04561) (PF10385) (PF04565) (PF00562) (PF04563) (PF04560) | ||||
| 525256.AvagD15_010100002325 | (PF03947) (PF00181) | (mitochondrial) | |||
| 525256.HMPREF0091_10707 | (PF01138) (PF00013) (PF03726) (PF03725) | ||||
| 525256.HMPREF0091_10253 | (PF03947) (PF00181) | (mitochondrial) | |||
| 525256.AvagD15_010100000035 | (PF00298) (PF03946) | mitochondrial | |||
| 525256.AvagD15_010100002932 | (PF01138) (PF00013) (PF03726) (PF03725) | ||||
| 525256.HMPREF0091_10645 | (PF00133) (PF09334) (PF13603) (PF08264) | ||||
| 525256.AvagD15_010100002777 | (PF00133) (PF09334) (PF13603) (PF08264) | ||||
| 525256.AvagD15_010100006006 | (PF01029) | (mitochondrial) | |||
| 525256.AvagD15_010100002435 | (PF00344) | mitochondrial; (mitochondrial) | |||
| 525256.HMPREF0091_10631 | (PF03577) | (mitochondrial) | |||
| 525256.HMPREF0091_10908 | (PF01116) | ER | |||
| 525256.AvagD15_010100002330 | (PF00203) | mitochondrial | |||
| 525256.AvagD15_010100004467 | (PF01116) | (mitochondrial) | |||
| 525256.AvagD15_010100005432 | (PF06480) | ER | |||
| 525256.HMPREF0091_10724 | (PF00013) | ER | |||
| 525256.HMPREF0091_10612 | (PF02446) | ER | |||
| 525256.AvagD15_010100001882 | (PF03596) | ER | |||
| 525256.AvagD15_010100002842 | (PF00013) | ER | |||
| 525256.HMPREF0091_10282 | (PF01000) (PF01193) PF03118 | ||||
| 525256.AvagD15_010100002475 | (PF01000) (PF01193) PF03118 | ||||
| 525256.HMPREF0091_10257 | PF00252 | (mitochondrial); mitochondrial | |||
| 525256.HMPREF0091_10254 | (PF00203) | mitochondrial | |||
| 525256.AvagD15_010100005412 | (PF04127) | ER | |||
| 525256.AvagD15_010100005382 | (PF14714) | mitochondrial | |||
| 525256.AvagD15_010100005566 | (PF01633) | (mitochondrial) | |||
| 525256.HMPREF0091_10271 | PF00861 | (mitochondrial) | |||
| 525256.HMPREF0091_10275 | (PF00344) | mitochondrial; (mitochondrial) | |||
| 525256.HMPREF0091_11053 | (PF01029) | (mitochondrial) | |||
| 525256.AvagD15_010100006121 | (PF00886) | mitochondrial | |||
| 525256.AvagD15_010100000661 | PF14580 | (ER) | |||
| 525256.HMPREF0091_10512 | (PF01116) | (mitochondrial) | |||
| 525256.AvagD15_010100003572 | (PF02446) | ER | |||
| 525256.AvagD15_010100001123 | (PF09363) (PF09364) (PF03894) | ||||
| 525256.AvagD15_010100002345 | PF00252 | (mitochondrial); mitochondrial | |||
| 525256.HMPREF0091_10697 | (PF00684) (PF01556) | (plastid) | |||
| 525256.AvagD15_010100004218 | (PF09363) (PF09364) (PF03894) | ||||
| 525256.HMPREF0091_11033 | (PF00886) | mitochondrial | |||
| 525256.HMPREF0091_11106 | (PF02844) (PF02843) | (plastid) | |||
| 525256.AvagD15_010100002221 | (PF08245) | mitochondrial | |||
| 525256.HMPREF0091_10196 | (PF09363) (PF09364) (PF03894) | ||||
| 525256.HMPREF0091_11000 | (PF06480) | ER | |||
| 525256.HMPREF0091_11009 | (PF03840) | ER | |||
| 525256.HMPREF0091_10990 | (PF14714) | mitochondrial | |||
| 525256.HMPREF0091_10996 | (PF04127) | ER | |||
| 525256.AvagD15_010100005482 | (PF03840) | ER | |||
| 525256.AvagD15_010100003899 | (PF02844) (PF02843) | (plastid) | |||
| 525256.HMPREF0091_10046 | (PF01981) | (mitochondrial) | |||
| 525256.HMPREF0091_11202 | (PF09363) (PF09364) (PF03894) | ||||
| 525256.AvagD15_010100005207 | (PF12392) | ER; (ER) | |||
| 525256.HMPREF0091_10953 | (PF12392) | ER; (ER) | |||
| 525256.AvagD15_010100002415 | PF00861 | (mitochondrial) | |||
| 525256.HMPREF0091_10788 | (PF12344) | ER | |||
| 525256.HMPREF0091_10363 | (PF03596) | ER | |||
| 525256.HMPREF0091_11216 | PF14580 | (ER) | |||
| 525256.AvagD15_010100000797 | (PF01981) | (mitochondrial) | |||
| 525256.AvagD15_010100002952 | (PF07650) | mitochondrial; (mitochondrial) | |||
| 525256.HMPREF0091_10771 | (PF01633) | mitochondrial | |||
| 525256.HMPREF0091_10485 | (PF08245) | mitochondrial | |||
| 525256.HMPREF0091_11221 | (PF02361) | (ER) | |||
| 525256.HMPREF0091_10806 | (PF03051) | (plastid) | |||
| 525256.AvagD15_010100002982 | (PF01556) (PF00684) | ||||
| 525256.AvagD15_010100002186 | (PF00133) (PF08264) | ||||
| 525256.HMPREF0091_10343 | (PF09334) (PF08264) | ||||
| 525256.AvagD15_010100002997 | (PF00679) (PF06421) | ||||
| 525256.AvagD15_010100002420 | PF03719 PF00333 | ||||
| 525256.AvagD15_010100005731 | (PF03051) | (plastid) | |||
| 525256.AvagD15_010100000636 | (PF02361) | (ER) | |||
| 525256.HMPREF0091_10103 | (PF00112) | (mitochondrial) | |||
| 525256.HMPREF0091_10728 | (PF01715) | plastid | |||
| 525256.HMPREF0091_10727 | (PF00919) | (mitochondrial) | |||
| 525256.HMPREF0091_10929 | (PF01409) (PF02912) | ||||
| 525256.AvagD15_010100005891 | (PF02881) (PF02978) | ||||
| 525256.AvagD15_010100003002 | (PF01649) | (mitochondrial) | |||
| 525256.AvagD15_010100002660 | (PF02446) | (ER) | |||
| 525256.HMPREF0091_10930 | (PF03484) (PF03147) | ||||
| 525256.AvagD15_010100005372 | (PF02224) | (plastid) | |||
| 525256.AvagD15_010100003704 | (PF09334) (PF08264) | ||||
| 525256.HMPREF0091_10256 | PF00189 (PF07650) | ||||
| 525256.HMPREF0091_10465 | (PF08245) | (mitochondrial) | |||
| 525256.AvagD15_010100002395 | PF00673 PF00281 | ||||
| 525256.HMPREF0091_10131 | (PF03948) (PF01281) | ||||
| 525256.AvagD15_010100004427 | (PF00958) (PF02540) | ||||
| 525256.HMPREF0091_10241 | (PF00164) | (mitochondrial) | |||
| 525256.HMPREF0091_10242 | PF00177 | (mitochondrial) | |||
| 525256.HMPREF0091_11044 | (PF08459) (PF12826) | ||||
| 525256.AvagD15_010100005092 | (PF01409) (PF02912) | ||||
| 525256.AvagD15_010100005097 | (PF03484) (PF03147) | ||||
| 525256.HMPREF0091_10091 | (PF02446) | (ER) | |||
| 525256.HMPREF0091_10651 | (PF01509) | (mitochondrial) | |||
| 525256.HMPREF0091_10504 | (PF00958) (PF02540) | ||||
| 525256.AvagD15_010100002807 | (PF01509) | (mitochondrial) | |||
| 525256.AvagD15_010100005901 | (PF02463) | (mitochondrial) | |||
| 525256.HMPREF0091_10640 | (PF00133) (PF08264) | ||||
| 525256.HMPREF0091_10649 | (PF02033) | (ER) | |||
| 525256.HMPREF0091_10492 | (PF00133) (PF08264) | ||||
| 525256.HMPREF0091_10267 | PF00673 PF00281 | ||||
| 525256.AvagD15_010100002752 | (PF00133) (PF08264) | ||||
| 525256.AvagD15_010100002340 | PF00189 (PF07650) | ||||
| 525256.HMPREF0091_10694 | (PF00679) (PF06421) | ||||
| 525256.HMPREF0091_10693 | (PF01649) | (mitochondrial) | |||
| 525256.HMPREF0091_10698 | (PF01556) (PF00684) | ||||
| 525256.HMPREF0091_11036 | (PF01746) | (ER) | |||
| 525256.HMPREF0091_10988 | (PF02224) | (plastid) | |||
| 525256.AvagD15_010100006106 | (PF01746) | (ER) | |||
| 525256.AvagD15_010100006076 | (PF08459) (PF12826) | ||||
| 525256.HMPREF0091_10843 | (PF02463) | (mitochondrial) | |||
| 525256.HMPREF0091_10841 | (PF02881) (PF02978) | ||||
| 525256.AvagD15_010100001924 | (PF08245) | (mitochondrial) | |||
| 525256.AvagD15_010100003299 | (PF03948) (PF01281) | ||||
| 525256.HMPREF0091_10232 | (PF00298) (PF03946) | ||||
| 525256.HMPREF0091_11128 | (PF01138) (PF03725) | ||||
| 525256.AvagD15_010100004019 | (PF01138) (PF03725) | ||||
| 525256.AvagD15_010100000446 | PF00177 | (mitochondrial) | |||
| 525256.AvagD15_010100000441 | (PF00164) | (mitochondrial) | |||
| 525256.AvagD15_010100002977 | (PF01556) (PF00684) | ||||
| 525256.AvagD15_010100002797 | (PF02033) | (ER) | |||
| 525256.AvagD15_010100005661 | (PF01121) | (ER) | |||
| 525256.AvagD15_010100000172 | (PF01715) | plastid | |||
| 525256.AvagD15_010100000177 | (PF00919) | (ER) | |||
| 525256.AvagD15_010100000342 | (PF00112) | (mitochondrial) | |||
| 525256.HMPREF0091_10272 | PF03719 PF00333 | ||||
| 525256.HMPREF0091_10790 | (PF01121) | (ER) | |||
| 525256.HMPREF0091_11197 | (PF03051) | ||||
| 525256.AvagD15_010100000902 | PF02037 | ||||
| 525256.AvagD15_010100001606 | (PF01765) | ||||
| 525256.AvagD15_010100001435 | (PF01195) | ||||
| 525256.AvagD15_010100005047 | (PF02540) | ||||
| 525256.AvagD15_010100001964 | (PF01795) | ||||
| 525256.AvagD15_010100005531 | (PF01245) | ||||
| 525256.AvagD15_010100002320 | PF00276 | ||||
| 525256.AvagD15_010100002430 | PF00828 | ||||
| 525256.AvagD15_010100001989 | (PF02463) | ||||
| 525256.HMPREF0091_10019 | (PF01228) | ||||
| 525256.AvagD15_010100002505 | (PF02361) | ||||
| 525256.AvagD15_010100003472 | (PF12437) | ||||
| 525256.HMPREF0091_10587 | (PF02938) | ||||
| 525256.AvagD15_010100004054 | (PF00679) | ||||
| 525256.HMPREF0091_11236 | (PF00707) | ||||
| 525256.AvagD15_010100000777 | PF00572 | not used | |||
| 525256.AvagD15_010100005257 | (PF02540) | ||||
| 525256.AvagD15_010100001511 | (PF00215) | ||||
| 525256.HMPREF0091_10905 | (PF12826) | ||||
| 525256.AvagD15_010100002335 | (PF00237) | ||||
| 525256.AvagD15_010100002425 | (PF00327) | ||||
| 525256.HMPREF0091_10002 | (PF01116) | ||||
| 525256.HMPREF0091_10706 | PF00312 | ||||
| 525256.HMPREF0091_10756 | (PF00889) | ||||
| 525256.HMPREF0091_10701 | (PF02130) | ||||
| 525256.HMPREF0091_10754 | (PF01765) | ||||
| 525256.HMPREF0091_10251 | (PF00573) | ||||
| 525256.HMPREF0091_10250 | PF00297 | ||||
| 525256.HMPREF0091_10354 | (PF06245) | ||||
| 525256.HMPREF0091_10599 | (PF02361) | ||||
| 525256.HMPREF0091_10590 | (PF12437) | ||||
| 525256.AvagD15_010100003649 | (PF06245) | ||||
| 525256.AvagD15_010100003644 | (PF04991) | ||||
| 525256.AvagD15_010100002727 | (PF02361) | ||||
| 525256.AvagD15_010100000907 | (PF05746) | ||||
| 525256.HMPREF0091_10297 | (PF01195) | ||||
| 525256.HMPREF0091_10918 | (PF01116) | ||||
| 525256.AvagD15_010100001238 | (PF06480) | ||||
| 525256.AvagD15_010100002680 | (PF00343) | ||||
| 525256.HMPREF0091_10107 | (PF13662) | ||||
| 525256.HMPREF0091_10109 | (PF13177) | ||||
| 525256.HMPREF0091_10613 | (PF00343) | ||||
| 525256.AvagD15_010100002892 | (PF00154) | ||||
| 525256.AvagD15_010100000751 | (PF02410) | ||||
| 525256.AvagD15_010100001400 | (PF02361) | ||||
| 525256.AvagD15_010100005896 | (PF02881) | ||||
| 525256.HMPREF0091_10280 | PF00411 | ||||
| 525256.HMPREF0091_10281 | (PF00163) | ||||
| 525256.HMPREF0091_10283 | (PF01196) | ||||
| 525256.HMPREF0091_10289 | (PF02361) | ||||
| 525256.HMPREF0091_10604 | (PF02361) | ||||
| 525256.HMPREF0091_10423 | (PF03652) | ||||
| 525256.AvagD15_010100002712 | (PF03577) | ||||
| 525256.HMPREF0091_10331 | (PF12897) | ||||
| 525256.AvagD15_010100003537 | (PF02361) | ||||
| 525256.HMPREF0091_10338 | (PF13177) | ||||
| 525256.AvagD15_010100004153 | (PF02403) | ||||
| 525256.AvagD15_010100001385 | (PF02873) | ||||
| 525256.AvagD15_010100005576 | (PF04991) | ||||
| 525256.AvagD15_010100002270 | (PF00679) | not used | |||
| 525256.AvagD15_010100002275 | PF00338 | ||||
| 525256.AvagD15_010100002470 | (PF00163) | ||||
| 525256.AvagD15_010100001018 | (PF12826) | ||||
| 525256.AvagD15_010100005971 | PF14311 | ||||
| 525256.AvagD15_010100004432 | (PF04383) | ||||
| 525256.HMPREF0091_10635 | (PF01018) | ||||
| 525256.HMPREF0091_10634 | (PF02361) | ||||
| 525256.HMPREF0091_10389 | (PF09334) | ||||
| 525256.AvagD15_010100004897 | (PF01116) | ||||
| 525256.HMPREF0091_10255 | (PF00237) | ||||
| 525256.HMPREF0091_10252 | PF00276 | ||||
| 525256.HMPREF0091_10703 | (PF07650) | ||||
| 525256.HMPREF0091_10259 | PF00366 | ||||
| 525256.HMPREF0091_10258 | (PF00831) | ||||
| 525256.HMPREF0091_11099 | (PF01556) | ||||
| 525256.HMPREF0091_11092 | (PF06480) | ||||
| 525256.HMPREF0091_11079 | (PF03462) | ||||
| 525256.AvagD15_010100001462 | (PF01668) | ||||
| 525256.HMPREF0091_10460 | (PF08245) | ||||
| 525256.AvagD15_010100002465 | PF00411 | ||||
| 525256.AvagD15_010100002460 | PF00416 | ||||
| 525256.AvagD15_010100002009 | (PF01029) | ||||
| 525256.HMPREF0091_10138 | (PF00679) | ||||
| 525256.HMPREF0091_10134 | (PF01250) | ||||
| 525256.AvagD15_010100002480 | (PF01196) | ||||
| 525256.HMPREF0091_10712 | (PF00919) | ||||
| 525256.HMPREF0091_10243 | (PF00679) | ||||
| 525256.AvagD15_010100002732 | (PF01018) | ||||
| 525256.AvagD15_010100003512 | (PF02361) | ||||
| 525256.AvagD15_010100000416 | (PF16320) | ||||
| 525256.AvagD15_010100000411 | (PF00466) | ||||
| 525256.AvagD15_010100001078 | (PF01116) | ||||
| 525256.AvagD15_010100001492 | (PF03462) | ||||
| 525256.AvagD15_010100002817 | (PF13662) | ||||
| 525256.AvagD15_010100002812 | (PF01687) | ||||
| 525256.AvagD15_010100004412 | (PF06071) | ||||
| 525256.AvagD15_010100003724 | (PF13177) | ||||
| 525256.HMPREF0091_10095 | (PF00343) | ||||
| 525256.HMPREF0091_10653 | (PF13662) | ||||
| 525256.HMPREF0091_10652 | (PF01687) | ||||
| 525256.HMPREF0091_10270 | PF00347 | ||||
| 525256.HMPREF0091_10273 | (PF00327) | ||||
| 525256.HMPREF0091_10274 | PF00828 | ||||
| 525256.HMPREF0091_10279 | PF00416 | ||||
| 525256.HMPREF0091_10505 | (PF04383) | ||||
| 525256.HMPREF0091_10501 | (PF06071) | ||||
| 525256.HMPREF0091_10895 | (PF05491) | ||||
| 525256.HMPREF0091_10892 | (PF02540) | ||||
| 525256.AvagD15_010100000087 | (PF03462) | not used | |||
| 525256.AvagD15_010100001596 | (PF00889) | ||||
| 525256.AvagD15_010100001591 | (PF00318) | not used | |||
| 525256.AvagD15_010100002937 | PF00312 | ||||
| 525256.AvagD15_010100005906 | (PF14622) | ||||
| 525256.HMPREF0091_10244 | PF00338 | ||||
| 525256.AvagD15_010100004402 | (PF03590) | ||||
| 525256.AvagD15_010100003759 | (PF12897) | ||||
| 525256.HMPREF0091_10646 | (PF02576) | ||||
| 525256.HMPREF0091_10647 | (PF13184) | ||||
| 525256.HMPREF0091_10648 | (PF11987) | ||||
| 525256.HMPREF0091_10462 | (PF08245) | ||||
| 525256.HMPREF0091_10269 | PF00410 | ||||
| 525256.HMPREF0091_10260 | PF00238 | ||||
| 525256.HMPREF0091_10261 | (PF17136) | ||||
| 525256.HMPREF0091_11111 | (PF13507) | ||||
| 525256.AvagD15_010100003577 | (PF00343) | ||||
| 525256.AvagD15_010100003409 | (PF02527) | ||||
| 525256.AvagD15_010100000506 | (PF13662) | ||||
| 525256.AvagD15_010100005756 | PF11070 | ||||
| 525256.AvagD15_010100000057 | (PF03577) | not used | |||
| 525256.AvagD15_010100005247 | (PF02367) | ||||
| 525256.AvagD15_010100002907 | (PF00919) | ||||
| 525256.AvagD15_010100002161 | (PF08245) | ||||
| 525256.HMPREF0091_10183 | (PF02403) | ||||
| 525256.AvagD15_010100003364 | (PF02463) | ||||
| 525256.HMPREF0091_10699 | (PF00919) | ||||
| 525256.HMPREF0091_11039 | (PF05746) | ||||
| 525256.HMPREF0091_11030 | (PF02410) | ||||
| 525256.HMPREF0091_11035 | (PF01782) | ||||
| 525256.HMPREF0091_10454 | (PF06418) | ||||
| 525256.HMPREF0091_10457 | (PF01795) | ||||
| 525256.HMPREF0091_10452 | (PF02463) | ||||
| 525256.AvagD15_010100000262 | (PF03051) | ||||
| 525256.AvagD15_010100000040 | PF00687 | ||||
| 525256.AvagD15_010100000516 | (PF13177) | ||||
| 525256.AvagD15_010100000461 | (PF01228) | ||||
| 525256.HMPREF0091_10857 | PF14311 | ||||
| 525256.AvagD15_010100005926 | (PF02620) | ||||
| 525256.AvagD15_010100001939 | (PF08245) | ||||
| 525256.AvagD15_010100002350 | (PF00831) | ||||
| 525256.AvagD15_010100002355 | PF00366 | ||||
| 525256.AvagD15_010100002171 | (PF04961) | ||||
| 525256.HMPREF0091_10193 | (PF00215) | ||||
| 525256.HMPREF0091_10064 | PF04103 | ||||
| 525256.HMPREF0091_10061 | (PF03462) | ||||
| 525256.HMPREF0091_10660 | (PF05746) | ||||
| 525256.HMPREF0091_10661 | PF02037 | ||||
| 525256.AvagD15_010100003314 | (PF01250) | ||||
| 525256.HMPREF0091_10684 | (PF00215) | ||||
| 525256.HMPREF0091_10202 | (PF08245) | ||||
| 525256.AvagD15_010100004203 | (PF00215) | ||||
| 525256.HMPREF0091_10440 | (PF01228) | ||||
| 525256.HMPREF0091_10448 | (PF01029) | ||||
| 525256.HMPREF0091_11137 | (PF00679) | ||||
| 525256.HMPREF0091_11006 | (PF00162) | ||||
| 525256.AvagD15_010100006111 | (PF01782) | ||||
| 525256.AvagD15_010100001038 | (PF01116) | ||||
| 525256.HMPREF0091_10848 | (PF02620) | ||||
| 525256.HMPREF0091_10844 | (PF14622) | ||||
| 525256.HMPREF0091_10842 | (PF02881) | ||||
| 525256.AvagD15_010100005796 | (PF00829) | ||||
| 525256.AvagD15_010100005791 | (PF01016) | ||||
| 525256.AvagD15_010100002962 | (PF02130) | ||||
| 525256.AvagD15_010100002365 | (PF17136) | ||||
| 525256.AvagD15_010100002360 | PF00238 | ||||
| 525256.HMPREF0091_10050 | PF00572 | ||||
| 525256.HMPREF0091_10054 | (PF01668) | ||||
| 525256.AvagD15_010100002782 | (PF02576) | ||||
| 525256.AvagD15_010100002787 | (PF13184) | ||||
| 525256.HMPREF0091_10235 | (PF16320) | ||||
| 525256.HMPREF0091_10234 | (PF00466) | ||||
| 525256.HMPREF0091_10230 | (PF00584) | ||||
| 525256.HMPREF0091_10233 | PF00687 | ||||
| 525256.HMPREF0091_10549 | (PF03437) | ||||
| 525256.HMPREF0091_10304 | (PF02361) | ||||
| 525256.HMPREF0091_10308 | (PF02873) | ||||
| 525256.HMPREF0091_10965 | (PF02540) | ||||
| 525256.AvagD15_010100000025 | (PF00584) | ||||
| 525256.HMPREF0091_10757 | (PF00318) | ||||
| 525256.AvagD15_010100005651 | (PF12344) | ||||
| 525256.AvagD15_010100002201 | (PF05697) | ||||
| 525256.AvagD15_010100002972 | (PF00919) | ||||
| 525256.AvagD15_010100006091 | (PF05746) | ||||
| 525256.HMPREF0091_10355 | (PF04991) | ||||
| 525256.AvagD15_010100002154 | (PF00707) | ||||
| 525256.HMPREF0091_10049 | PF00380 | ||||
| 525256.AvagD15_010100002792 | (PF11987) | ||||
| 525256.AvagD15_010100003334 | (PF00679) | ||||
| 525256.AvagD15_010100003844 | (PF08367) | ||||
| 525256.HMPREF0091_10316 | (PF08367) | ||||
| 525256.HMPREF0091_10310 | (PF05167) | ||||
| 525256.AvagD15_010100004647 | (PF03437) | ||||
| 525256.HMPREF0091_10715 | (PF00154) | ||||
| 525256.AvagD15_010100000782 | PF00380 | ||||
| 525256.AvagD15_010100005062 | (PF05491) | ||||
| 525256.HMPREF0091_10820 | (PF01016) | ||||
| 525256.HMPREF0091_10821 | (PF00829) | ||||
| 525256.AvagD15_010100001949 | (PF08245) | ||||
| 525256.AvagD15_010100002410 | PF00347 | ||||
| 525256.AvagD15_010100003924 | (PF13507) | ||||
| 525256.AvagD15_010100004812 | (PF01228) | ||||
| 525256.HMPREF0091_10144 | (PF02463) | ||||
| 525256.HMPREF0091_10764 | (PF01245) | ||||
| 525256.HMPREF0091_10499 | (PF03590) | ||||
| 525256.HMPREF0091_10495 | (PF04961) | ||||
| 525256.HMPREF0091_10497 | (PF08245) | ||||
| 525256.AvagD15_010100003457 | (PF02938) | ||||
| 525256.AvagD15_010100005472 | (PF00162) | ||||
| 525256.HMPREF0091_10813 | PF11070 | ||||
| 525256.AvagD15_010100002887 | (PF00154) | not used | |||
| 525256.AvagD15_010100001979 | (PF06418) | ||||
| 525256.AvagD15_010100001757 | (PF03652) | ||||
| 525256.AvagD15_010100001375 | (PF05167) | ||||
| 525256.HMPREF0091_10963 | (PF02367) | ||||
| 525256.AvagD15_010100002315 | (PF00573) | ||||
| 525256.AvagD15_010100002310 | PF00297 | ||||
| 525256.AvagD15_010100002405 | PF00410 | ||||
| 525256.AvagD15_010100002089 | (PF09334) | ||||
| 525256.HMPREF0091_10020 | (PF01228) | ||||
| 525256.HMPREF0091_10023 | (PF03577) | ||||
| 525256.AvagD15_010100004807 | (PF01228) | ||||
| 525256.AvagD15_010100003869 | (PF01556) | ||||
| 525256.HMPREF0091_10153 | (PF02527) | ||||
| 525256.HMPREF0091_10773 | (PF04991) | ||||
| 525256.AvagD15_010100004243 | (PF08245) | ||||
| 525256.HMPREF0091_10489 | (PF05697) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: NO (FDR = 0.5 %)
- Functional Type III secretion system: N.D.
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: N.D.
Individual results for each secretion system
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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- +43 1 4277 876681
- contact.cube@univie.ac.at
