Metamenu

Effective results for Treponema primitia ZAS-2 (eggnog40)

Summary

Number of putative secreted proteins: 111
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 111 proteins (11 high, 100 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
545694.TREPR_3569(PF02872)ER
545694.TREPR_2785PF12733ER
545694.TREPR_2787PF12733ER
545694.TREPR_2953(PF02872)ER
545694.TREPR_1149(PF00137)ER
545694.TREPR_2402(PF02096)ER
545694.TREPR_2403(PF02096)ER
545694.TREPR_2404(PF02096)ER
545694.TREPR_3230PF12733(ER)
545694.TREPR_1357(PF02872)ER
545694.TREPR_3238(PF13306)ER
545694.TREPR_1231(PF00137)ER
545694.TREPR_3854(PF13306)ER
545694.TREPR_1742(PF02872)ER
545694.TREPR_1640(PF13306)ER
545694.TREPR_1064(PF05711)(mitochondrial)
545694.TREPR_1071(PF13306)ER
545694.TREPR_2399(PF02096)ER
545694.TREPR_0503(PF02096)ER
545694.TREPR_1296PF12733ER
545694.TREPR_2652(PF00137)ER
545694.TREPR_2836(PF13306)ER
545694.TREPR_2839(PF02872)ER
545694.TREPR_2233PF03269mitochondrial; (mitochondrial)
545694.TREPR_2345(PF13306)ER
545694.TREPR_3172PF12733ER
545694.TREPR_3175PF12733ER
545694.TREPR_1587PF12733ER
545694.TREPR_1134(PF02872)ER
545694.TREPR_1152(PF02874) (PF16886)
545694.TREPR_3094(PF02906) (PF02256)
545694.TREPR_1215(PF01813)(mitochondrial)
545694.TREPR_0961(PF13306)(ER)
545694.TREPR_2886(PF00148)(mitochondrial)
545694.TREPR_3594(PF02906) (PF02256)
545694.TREPR_2998(PF01208)(mitochondrial)
545694.TREPR_2499(PF01875)(mitochondrial)
545694.TREPR_0390(PF02906)(mitochondrial)
545694.TREPR_3538(PF00148)(plastid)
545694.TREPR_3530(PF02872)(ER)
545694.TREPR_3288(PF02906) (PF02256)
545694.TREPR_2656(PF02874) (PF16886)
545694.TREPR_0875(PF13306)(ER)
545694.TREPR_1339PF03727 PF00349
545694.TREPR_1304(PF05034) (PF07476)
545694.TREPR_2372(PF01531)(mitochondrial)
545694.TREPR_3568(PF01208)
545694.TREPR_0302(PF13534)
545694.TREPR_1153(PF02874)
545694.TREPR_3365(PF13534)
545694.TREPR_0822(PF13151)
545694.TREPR_0786(PF13306)
545694.TREPR_2179(PF13534)
545694.TREPR_3547(PF02906)
545694.TREPR_3540(PF00148)
545694.TREPR_1962(PF01208)
545694.TREPR_1560(PF01208)
545694.TREPR_1172(PF01875)
545694.TREPR_3300(PF02906)
545694.TREPR_3122(PF02906)
545694.TREPR_2555(PF02874)
545694.TREPR_2887(PF00148)
545694.TREPR_2884(PF00148)
545694.TREPR_2885(PF00148)
545694.TREPR_0011(PF05711)
545694.TREPR_3119(PF04383)
545694.TREPR_1234(PF02874)
545694.TREPR_1236(PF02874)
545694.TREPR_0753(PF01208)
545694.TREPR_0756(PF01208)
545694.TREPR_2453(PF00162)
545694.TREPR_2629(PF04383)
545694.TREPR_3460(PF13534)
545694.TREPR_1522(PF01208)
545694.TREPR_1065(PF10974)
545694.TREPR_1884(PF13475)
545694.TREPR_3642(PF16314)
545694.TREPR_0414(PF13151)
545694.TREPR_3020(PF01208)
545694.TREPR_3736PF03269
545694.TREPR_3735(PF01531)
545694.TREPR_1891(PF11074)
545694.TREPR_1867(PF13306)
545694.TREPR_0395(PF00162)
545694.TREPR_0246(PF00148)
545694.TREPR_0247(PF00148)
545694.TREPR_1441(PF16011)
545694.TREPR_0475(PF01208)
545694.TREPR_0509(PF10974)
545694.TREPR_1297PF12733
545694.TREPR_3283(PF02906)
545694.TREPR_2655(PF02874)
545694.TREPR_2654(PF01813)
545694.TREPR_0514(PF01208)
545694.TREPR_2913(PF03630)
545694.TREPR_2133(PF05935)
545694.TREPR_2134(PF05935)
545694.TREPR_1109(PF13534)
545694.TREPR_3779(PF13534)
545694.TREPR_1856(PF13475)
545694.TREPR_1589(PF02906)
545694.TREPR_2899(PF01208)
545694.TREPR_1004(PF01208)
545694.TREPR_1312(PF01208)
545694.TREPR_3571(PF01208)
545694.TREPR_3883(PF05711)
545694.TREPR_1552(PF01208)
545694.TREPR_1558(PF01208)
545694.TREPR_0541(PF00148)
545694.TREPR_0542(PF00148)
545694.TREPR_1017(PF12646)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================