Metamenu

Effective results for Oxalobacter formigenes HOxBLS (eggnog40)

Summary

Number of putative secreted proteins: 73
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 73 proteins (50 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
556268.OFAG_00978PF08238ER
556268.OFAG_00975PF08238mitochondrial
556268.OFAG_00977PF08238ER
556268.OFAG_00976PF08238ER
556268.OFAG_00884PF08238(ER)
556268.OFAG_00886PF08238ER
556268.OFAG_01024PF08238(ER)
556268.OFAG_01026PF08238ER
556268.OFAG_00968(PF13540)ER
556268.OFAG_00966(PF13540)ER
556268.OFAG_00967(PF13540)ER
556268.OFAG_00965(PF13540)ER
556268.OFAG_00417PF08238ER
556268.OFAG_00958PF08238(mitochondrial)
556268.OFAG_00135PF13334ER
556268.OFAG_00949PF08238ER
556268.OFAG_00593(PF02415)mitochondrial
556268.OFAG_00920PF08238ER
556268.OFAG_00858PF08238ER
556268.OFAG_00857PF08238ER
556268.OFAG_00855PF08238ER
556268.OFAG_00919PF08238ER
556268.OFAG_00918PF08238(mitochondrial)
556268.OFAG_00912PF08238ER
556268.OFAG_00916PF08238ER
556268.OFAG_00915PF08238ER
556268.OFAG_01056PF08238(mitochondrial)
556268.OFAG_01045PF08238ER
556268.OFAG_00640PF08238(ER); plastid
556268.OFAG_01076PF08238mitochondrial
556268.OFAG_01075PF08238mitochondrial
556268.OFAG_01072PF08238(ER)
556268.OFAG_01069PF08238ER
556268.OFAG_01716PF08238(mitochondrial); (plastid)
556268.OFAG_01016PF08238ER
556268.OFAG_01721(PF13436)ER
556268.OFAG_02118PF08238ER
556268.OFAG_02110PF08238ER
556268.OFAG_02116PF08238ER
556268.OFAG_00996(PF13540)ER
556268.OFAG_01103PF08238ER
556268.OFAG_01032PF08238ER; (ER)
556268.OFAG_01074PF08238(mitochondrial)
556268.OFAG_00987(PF03797)(mitochondrial)
556268.OFAG_00982PF08238(ER)
556268.OFAG_01037PF08238(plastid)
556268.OFAG_00973PF08238
556268.OFAG_01348PF08238
556268.OFAG_01029PF08238
556268.OFAG_00083PF08238
556268.OFAG_02122PF08238
556268.OFAG_00961PF08238
556268.OFAG_00959PF08238
556268.OFAG_00134(PF00959)
556268.OFAG_00948PF08238
556268.OFAG_01087(PF03797)
556268.OFAG_01084(PF03797)
556268.OFAG_01159(PF03797)
556268.OFAG_01152PF08238
556268.OFAG_00336(PF00959)
556268.OFAG_01131(PF03797)
556268.OFAG_01878PF08238
556268.OFAG_00863(PF00959)
556268.OFAG_01841(PF11969)
556268.OFAG_01124(PF03797)
556268.OFAG_01015(PF03797)
556268.OFAG_00633(PF03797)
556268.OFAG_02112PF08238
556268.OFAG_00779(PF00959)
556268.OFAG_00981PF08238
556268.OFAG_01030(PF03797)
556268.OFAG_01034(PF03797)
556268.OFAG_00347(PF00959)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================