Metamenu

Effective results for Vibrio alginolyticus 40B (eggnog40)

Summary

Number of putative secreted proteins: 619
- Predicted by EffectiveT3: 196 (high confidence), 277 (low confidence)
- Predicted by EffectiveCCBD: 26 within, 28 before, 54 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 56 proteins (3 high, 53 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
674977.VMC_08410+ER
674977.VMC_39670+(>)(mitochondrial)
674977.VMC_03640+mitochondrial
674977.VMC_35940(PF17186)ER
674977.VMC_39130(>)(ER)
674977.VMC_05830(PF17186)ER
674977.VMC_26160(>)ER
674977.VMC_05760(<)ER
674977.VMC_14360+(mitochondrial)
674977.VMC_37430PF06839mitochondrial; (mitochondrial)
674977.VMC_25220(>)ER
674977.VMC_31220+ER
674977.VMC_12930(>)ER
674977.VMC_31030+ER
674977.VMC_08710(>)ER
674977.VMC_42860+ER
674977.VMC_26760+ER
674977.VMC_41080(>)ER
674977.VMC_35900(PF09317)ER
674977.VMC_23800+ER
674977.VMC_42100(>)mitochondrial
674977.VMC_09630+mitochondrial; (plastid)
674977.VMC_09290(PF00194)ER
674977.VMC_20410(<)ER
674977.VMC_26770+ER
674977.VMC_29390(PF00031)ER
674977.VMC_02880+mitochondrial
674977.VMC_04580(PF02010)ER
674977.VMC_35250(PF08787)ER
674977.VMC_11800+(mitochondrial); mitochondrial
674977.VMC_02690+(mitochondrial)
674977.VMC_00900+ER
674977.VMC_00830(PF02028)ER
674977.VMC_30640(PF08180)ER
674977.VMC_35240(PF08787)ER
674977.VMC_27850+ER
674977.VMC_28880+ER
674977.VMC_19480+(mitochondrial); mitochondrial
674977.VMC_39110(>)ER
674977.VMC_18150(>)ER
674977.VMC_18010(PF09317)ER
674977.VMC_20850(PF02028)mitochondrial
674977.VMC_40480(>)mitochondrial
674977.VMC_27680+mitochondrial
674977.VMC_16530(<)ER
674977.VMC_35180(>)ER
674977.VMC_09430(PF06468)ER
674977.VMC_43030PF05548(mitochondrial)
674977.VMC_28680(<)mitochondrial; (mitochondrial)
674977.VMC_21750+(ER)
674977.VMC_15990+ER
674977.VMC_11430(PF00194)ER
674977.VMC_35280(PF08787)ER
674977.VMC_09440(PF06468)ER
674977.VMC_09060(<)ER
674977.VMC_26670(<)ER
674977.VMC_03720(>)ER
674977.VMC_32390+ER
674977.VMC_12700+mitochondrial
674977.VMC_10600(>)ER
674977.VMC_32630(>)ER
674977.VMC_07400(>)ER; (ER)
674977.VMC_13420+(<)
674977.VMC_23680(+)ER
674977.VMC_39650(+)ER
674977.VMC_39730+plastid
674977.VMC_02090(+)ER
674977.VMC_27000(+)(ER)
674977.VMC_35480(+)ER
674977.VMC_09640+(plastid)
674977.VMC_13590(+)mitochondrial
674977.VMC_09800(+)(mitochondrial); plastid
674977.VMC_09730+(plastid)
674977.VMC_14800+(mitochondrial)
674977.VMC_14020+plastid
674977.VMC_09650+plastid
674977.VMC_19630+(mitochondrial)
674977.VMC_00490(+)(ER)
674977.VMC_21250+(mitochondrial)
674977.VMC_32580(+)mitochondrial; (mitochondrial)
674977.VMC_20530(+)(<)
674977.VMC_42640+(mitochondrial)
674977.VMC_29340(+)ER
674977.VMC_39690(+)ER
674977.VMC_28910(+)(mitochondrial)
674977.VMC_16760(+)(ER)
674977.VMC_16140(+)(ER); (plastid)
674977.VMC_35910(PF09317)(mitochondrial)
674977.VMC_18050(+)(mitochondrial)
674977.VMC_33350(+)(mitochondrial)
674977.VMC_05430(+)(mitochondrial); (plastid)
674977.VMC_25470(+)mitochondrial; (mitochondrial)
674977.VMC_05610+(plastid)
674977.VMC_36250(+)(mitochondrial)
674977.VMC_06750(+)(ER); (mitochondrial)
674977.VMC_12340(+)ER
674977.VMC_02050(+)(ER)
674977.VMC_40810(+)ER
674977.VMC_33560(+)(mitochondrial)
674977.VMC_10260(+)ER
674977.VMC_12570+(plastid)
674977.VMC_16110+(<)
674977.VMC_36690+(ER)
674977.VMC_42330+(ER)
674977.VMC_01090(+)ER
674977.VMC_37860(>)(ER)
674977.VMC_11850+(plastid)
674977.VMC_16000(>)(ER)
674977.VMC_14400+(PF05686)
674977.VMC_35560+(PF02028)
674977.VMC_11860++
674977.VMC_00520(+)(ER)
674977.VMC_09340+(plastid)
674977.VMC_09110(+)ER; (ER)
674977.VMC_26090+plastid
674977.VMC_33280(+)ER
674977.VMC_04630(+)(mitochondrial)
674977.VMC_06300+(mitochondrial)
674977.VMC_41050++
674977.VMC_24240(+)mitochondrial; plastid
674977.VMC_15880+plastid
674977.VMC_01430(>)(mitochondrial)
674977.VMC_39490+
674977.VMC_39810(PF02028)
674977.VMC_37890+
674977.VMC_32710+
674977.VMC_02900+
674977.VMC_27100(+)(PF02028)
674977.VMC_18820(>)
674977.VMC_08290+
674977.VMC_15660+
674977.VMC_12720+
674977.VMC_23930(+)(plastid)
674977.VMC_24310(PF00579)
674977.VMC_07880+
674977.VMC_12000(+)(mitochondrial)
674977.VMC_38830(>)
674977.VMC_09670+
674977.VMC_08470+
674977.VMC_20010+
674977.VMC_23890(>)
674977.VMC_00850(PF05724)
674977.VMC_30750+
674977.VMC_32910(PF06042)
674977.VMC_13140(+)(plastid)
674977.VMC_01330+
674977.VMC_21980+
674977.VMC_01000(>)
674977.VMC_05140+
674977.VMC_31650(+)(ER)
674977.VMC_13040+
674977.VMC_33360(+)(ER)
674977.VMC_13100(>)
674977.VMC_29360+
674977.VMC_43040+
674977.VMC_38350(>)
674977.VMC_11690+
674977.VMC_31830+
674977.VMC_28470(>)
674977.VMC_27580+
674977.VMC_15790+
674977.VMC_00840(PF02028)
674977.VMC_33080+
674977.VMC_02920(>)
674977.VMC_37980+
674977.VMC_15260+
674977.VMC_18330(PF05724)
674977.VMC_35580+
674977.VMC_22990(>)
674977.VMC_23460+
674977.VMC_06060+
674977.VMC_29350(+)(>)
674977.VMC_25530(PF00136)
674977.VMC_01700(PF00579)
674977.VMC_29730+
674977.VMC_07390+
674977.VMC_25710+
674977.VMC_27570(PF05932)
674977.VMC_00870(PF05724)
674977.VMC_01520+
674977.VMC_33470(<)
674977.VMC_32930(<)
674977.VMC_06360+
674977.VMC_26280(>)
674977.VMC_19320+
674977.VMC_27390+
674977.VMC_19030(<)
674977.VMC_18320(PF05724)
674977.VMC_22870(PF09818)
674977.VMC_35020+
674977.VMC_17960+
674977.VMC_04920+
674977.VMC_13660+
674977.VMC_37670(+)(PF00579)
674977.VMC_06760(PF05706)
674977.VMC_25890(>)
674977.VMC_02390+
674977.VMC_25520(PF00136)
674977.VMC_12250(<)
674977.VMC_02640(>)
674977.VMC_10870+
674977.VMC_27960+
674977.VMC_33190+
674977.VMC_33060+
674977.VMC_14090+
674977.VMC_03110(>)
674977.VMC_27140+
674977.VMC_33530+
674977.VMC_02890+
674977.VMC_22860(PF09818)
674977.VMC_18090+
674977.VMC_33990(+)(mitochondrial)
674977.VMC_13650+
674977.VMC_20630(<)
674977.VMC_09740+
674977.VMC_33070(PF07720)
674977.VMC_10460+
674977.VMC_25550+
674977.VMC_30570+
674977.VMC_01610+
674977.VMC_25770+
674977.VMC_41340+
674977.VMC_37350(<)
674977.VMC_38080+
674977.VMC_19650(PF02028)
674977.VMC_19300+
674977.VMC_41010(+)(>)
674977.VMC_27600+
674977.VMC_15300(>)
674977.VMC_03290(+)(ER)
674977.VMC_40150+
674977.VMC_21240(+)(ER)
674977.VMC_22490+
674977.VMC_08730+
674977.VMC_32610(+)(>)
674977.VMC_34220(+)(<)
674977.VMC_38880+
674977.VMC_24140+
674977.VMC_25940(PF02028)
674977.VMC_24890+
674977.VMC_40990+
674977.VMC_20620+
674977.VMC_11810+
674977.VMC_31300+
674977.VMC_30140+
674977.VMC_36810(>)
674977.VMC_27540(PF05932)
674977.VMC_27050(PF00579)
674977.VMC_02870+
674977.VMC_22930+
674977.VMC_23820(<)
674977.VMC_21690+
674977.VMC_34120(+)(plastid)
674977.VMC_40960+
674977.VMC_31570+
674977.VMC_41810PF05548
674977.VMC_26130+
674977.VMC_03630+
674977.VMC_25160+
674977.VMC_27440(PF05932)
674977.VMC_14140+
674977.VMC_38440(>)
674977.VMC_12450(>)
674977.VMC_11580+
674977.VMC_00160(PF07653)
674977.VMC_11290(>)
674977.VMC_42130+
674977.VMC_27180(>)
674977.VMC_09570(+)(mitochondrial)
674977.VMC_34110+
674977.VMC_04400+
674977.VMC_23920(>)
674977.VMC_31540+
674977.VMC_06510+
674977.VMC_41550+
674977.VMC_33910+
674977.VMC_03330(>)
674977.VMC_13960+
674977.VMC_06020+
674977.VMC_42630+
674977.VMC_25170+
674977.VMC_12420+
674977.VMC_13500+
674977.VMC_35500+
674977.VMC_08560+
674977.VMC_29820+
674977.VMC_42410(<)
674977.VMC_34740+
674977.VMC_11130+
674977.VMC_30330(<)
674977.VMC_09780(>)
674977.VMC_30200+
674977.VMC_26910+
674977.VMC_41830+
674977.VMC_13280+
674977.VMC_13990+
674977.VMC_13970(>)
674977.VMC_33740+
674977.VMC_27640+
674977.VMC_00140(PF06042)
674977.VMC_37910+
674977.VMC_38910(>)
674977.VMC_09220+
674977.VMC_10910+
674977.VMC_06650+
674977.VMC_08460+
674977.VMC_02330+
674977.VMC_17070+
674977.VMC_32980+
674977.VMC_30450+
674977.VMC_21550+
674977.VMC_41280(PF05971)
674977.VMC_33000(PF05932)
674977.VMC_33390(<)
674977.VMC_26270+
674977.VMC_19710+
674977.VMC_02830+
674977.VMC_38470(<)
674977.VMC_20840+
674977.VMC_22970+
674977.VMC_14470(+)(<)
674977.VMC_29800+
674977.VMC_13700(<)
674977.VMC_40030(<)
674977.VMC_13010+
674977.VMC_37660(PF00579)
674977.VMC_25460(<)
674977.VMC_41290(+)(PF05971)
674977.VMC_12560+
674977.VMC_02490(+)plastid
674977.VMC_27310+
674977.VMC_05090(+)(mitochondrial)
674977.VMC_40000+
674977.VMC_27400(PF05932)
674977.VMC_37110+
674977.VMC_18850+
674977.VMC_05680+
674977.VMC_15650+
674977.VMC_14700+
674977.VMC_33200+
674977.VMC_40280(>)
674977.VMC_09590+
674977.VMC_42200+
674977.VMC_39040(+)(mitochondrial)
674977.VMC_16830(+)(mitochondrial)
674977.VMC_39400+
674977.VMC_31610+
674977.VMC_15470+
674977.VMC_40440(>)
674977.VMC_11940+
674977.VMC_31870(PF01715)
674977.VMC_33540+
674977.VMC_19560(<)
674977.VMC_03750+
674977.VMC_27410+
674977.VMC_37120+
674977.VMC_07210(+)(mitochondrial)
674977.VMC_02810+
674977.VMC_29950+
674977.VMC_42740(PF06042)
674977.VMC_28510(<)
674977.VMC_05690+
674977.VMC_11550(>)
674977.VMC_22770+
674977.VMC_41300+
674977.VMC_14260(<)
674977.VMC_05200+
674977.VMC_35810(>)
674977.VMC_11170+
674977.VMC_01260+
674977.VMC_40020+
674977.VMC_22380+
674977.VMC_23040+
674977.VMC_18540+
674977.VMC_33820+
674977.VMC_01050+
674977.VMC_13240+
674977.VMC_31860(PF01715)
674977.VMC_12980+
674977.VMC_29170(+)plastid
674977.VMC_21360+
674977.VMC_03560(+)plastid
674977.VMC_01670+
674977.VMC_05230+
674977.VMC_11880(+)(plastid)
674977.VMC_16030+
674977.VMC_21580+
674977.VMC_27420(PF05932)
674977.VMC_04390+
674977.VMC_20370+
674977.VMC_32890(>)
674977.VMC_17100+
674977.VMC_19500+
674977.VMC_32090+
674977.VMC_19980+
674977.VMC_42530+
674977.VMC_13480+
674977.VMC_13730(+)(ER)
674977.VMC_10760(+)(mitochondrial)
674977.VMC_25300(+)(ER)
674977.VMC_09710+
674977.VMC_30380(>)
674977.VMC_01640+
674977.VMC_40310(+)
674977.VMC_04760(+)
674977.VMC_35700(+)
674977.VMC_14440(+)
674977.VMC_11350(+)
674977.VMC_11190(+)
674977.VMC_31390(+)
674977.VMC_34050(+)
674977.VMC_21720(+)
674977.VMC_20740(+)
674977.VMC_00670(+)
674977.VMC_23910(+)
674977.VMC_05590(+)
674977.VMC_27770(+)
674977.VMC_19340(+)
674977.VMC_08790(+)
674977.VMC_29970(+)
674977.VMC_07740(+)
674977.VMC_23850(+)
674977.VMC_23100(+)
674977.VMC_04160(+)
674977.VMC_11030(+)
674977.VMC_16980(+)
674977.VMC_26740(+)
674977.VMC_03710(+)
674977.VMC_41680(+)
674977.VMC_37180(+)
674977.VMC_22540(+)
674977.VMC_42650(+)
674977.VMC_07710(+)
674977.VMC_24660(+)
674977.VMC_03890(+)
674977.VMC_18480(+)
674977.VMC_18660(+)
674977.VMC_08810(+)
674977.VMC_20720(+)
674977.VMC_17170(+)
674977.VMC_37370(+)
674977.VMC_17360(+)
674977.VMC_03670(+)
674977.VMC_27480(+)
674977.VMC_36000(+)
674977.VMC_39930(+)
674977.VMC_13680(+)
674977.VMC_34460(+)
674977.VMC_30510(+)
674977.VMC_00420(+)
674977.VMC_24050(+)
674977.VMC_18370(+)
674977.VMC_23520(+)
674977.VMC_13270(+)
674977.VMC_39580(+)
674977.VMC_31360(+)
674977.VMC_26470(+)
674977.VMC_27490(+)
674977.VMC_21260(+)
674977.VMC_04720(+)
674977.VMC_36340(+)
674977.VMC_39410(+)
674977.VMC_18440(+)
674977.VMC_23020(+)
674977.VMC_33180(+)
674977.VMC_24130(+)
674977.VMC_42090(+)
674977.VMC_39460(+)
674977.VMC_15980(+)
674977.VMC_00810(+)
674977.VMC_35680(+)
674977.VMC_14760(+)
674977.VMC_25100(+)
674977.VMC_09600(+)
674977.VMC_20060(+)
674977.VMC_35310(+)
674977.VMC_43220(+)
674977.VMC_28380(+)
674977.VMC_40750(+)
674977.VMC_09170(+)
674977.VMC_29520(+)
674977.VMC_20400(+)
674977.VMC_31940(+)
674977.VMC_01570(+)
674977.VMC_07580(+)
674977.VMC_00930(+)
674977.VMC_21280(+)
674977.VMC_30360(+)
674977.VMC_25960(+)
674977.VMC_37930(+)
674977.VMC_17530(+)
674977.VMC_08030(+)
674977.VMC_19260(+)
674977.VMC_12510(+)
674977.VMC_19910(+)
674977.VMC_08690(+)
674977.VMC_09330(+)
674977.VMC_42120(+)
674977.VMC_42940(+)
674977.VMC_30550(+)
674977.VMC_35460(+)
674977.VMC_31950(+)
674977.VMC_30130(+)
674977.VMC_03450(+)
674977.VMC_32810(+)
674977.VMC_41490(+)
674977.VMC_26940(+)
674977.VMC_06030(+)
674977.VMC_33780(+)
674977.VMC_32780(+)
674977.VMC_22720(+)
674977.VMC_14690(+)
674977.VMC_29850(+)
674977.VMC_12750(+)
674977.VMC_05250(+)
674977.VMC_03800(+)
674977.VMC_10530(+)
674977.VMC_09150(+)
674977.VMC_01890(+)
674977.VMC_11870(+)
674977.VMC_17410(+)
674977.VMC_21600(+)
674977.VMC_27070(+)
674977.VMC_16640(+)
674977.VMC_09360(+)
674977.VMC_03860(+)
674977.VMC_42670(+)
674977.VMC_01310(+)
674977.VMC_24370(+)
674977.VMC_23770(+)
674977.VMC_40940(+)
674977.VMC_29590(+)
674977.VMC_30680(+)
674977.VMC_27460(+)
674977.VMC_02540(+)
674977.VMC_30980(+)
674977.VMC_15740(+)
674977.VMC_07490(+)
674977.VMC_02970(+)
674977.VMC_18410(+)
674977.VMC_15410(+)
674977.VMC_43110(+)
674977.VMC_42880(+)
674977.VMC_40950(+)
674977.VMC_29050(+)
674977.VMC_33900(+)
674977.VMC_13360(+)
674977.VMC_11920(+)
674977.VMC_05920(+)
674977.VMC_07300(+)
674977.VMC_17440(+)
674977.VMC_33210(+)
674977.VMC_38580(+)
674977.VMC_37100(+)
674977.VMC_16710(+)
674977.VMC_31080(+)
674977.VMC_35630(+)
674977.VMC_16620(+)
674977.VMC_14710(+)
674977.VMC_39960(+)
674977.VMC_36300(+)
674977.VMC_39050(+)
674977.VMC_25800(+)
674977.VMC_07130(+)
674977.VMC_02230(+)
674977.VMC_31620(+)
674977.VMC_29330(+)
674977.VMC_02010(+)
674977.VMC_41850(+)
674977.VMC_16800(+)
674977.VMC_33870(+)
674977.VMC_36530(+)
674977.VMC_20940(+)
674977.VMC_00310(+)
674977.VMC_34480(+)
674977.VMC_42510(+)
674977.VMC_14380(+)
674977.VMC_38800(+)
674977.VMC_17590(+)
674977.VMC_09500(+)
674977.VMC_04440(+)
674977.VMC_03370(+)
674977.VMC_37790(+)
674977.VMC_11890(+)
674977.VMC_41610(+)
674977.VMC_24220(+)
674977.VMC_27230(+)
674977.VMC_38650(+)
674977.VMC_35760(+)
674977.VMC_35610(+)
674977.VMC_36090(+)
674977.VMC_32080(+)
674977.VMC_36700(+)
674977.VMC_09160(+)
674977.VMC_17680(+)
674977.VMC_23420(+)
674977.VMC_13720(+)
674977.VMC_28840(+)
674977.VMC_15400(+)
674977.VMC_43120(+)
674977.VMC_00100(+)
674977.VMC_01580(+)
674977.VMC_00610(+)
674977.VMC_39280(+)
674977.VMC_17120(+)
674977.VMC_29770(+)
674977.VMC_26060(+)
674977.VMC_03210(+)
674977.VMC_02580(+)
674977.VMC_38710(+)
674977.VMC_20810(+)
674977.VMC_05210(+)
674977.VMC_17570(+)
674977.VMC_09660(+)
674977.VMC_32700(+)
674977.VMC_27010(+)
674977.VMC_02570(+)
674977.VMC_24900(+)
674977.VMC_01480(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 2.0 (20/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.5 (20/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================