Metamenu

Effective results for Bacteroides helcogenes P 36-108 (eggnog40)

Summary

Number of putative secreted proteins: 109
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 44 eukaryotic-like domains, contained in 109 proteins (20 high, 89 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
693979.Bache_0057(PF00728) (PF02838) (PF13287)ER
693979.Bache_2793(PF00728) (PF02838) (PF13287)ER
693979.Bache_1230(PF14684) (PF03572)ER
693979.Bache_0412(PF14684) (PF03572)ER
693979.Bache_0092(PF00728) (PF02838)ER
693979.Bache_0470(PF00728) (PF02838)ER
693979.Bache_0502(PF16353) (PF02929)(ER)
693979.Bache_2906(PF02838) (PF07555)ER; (ER)
693979.Bache_0469(PF16353) (PF02929)ER
693979.Bache_0045(PF09113) PF09112ER
693979.Bache_1482(PF09113) PF09112(mitochondrial)
693979.Bache_2782(PF00728) (PF02838)ER
693979.Bache_2794(PF00728) (PF02838)ER
693979.Bache_0026(PF16353) (PF02929)(mitochondrial)
693979.Bache_0786(PF16353) (PF02929)ER
693979.Bache_0105(PF14684) (PF03572)ER
693979.Bache_1358(PF00728) (PF02838)ER
693979.Bache_2193(PF00728) (PF02838)ER
693979.Bache_1514(PF12437)(mitochondrial)
693979.Bache_0603(PF16355)ER
693979.Bache_0601(PF16355)mitochondrial
693979.Bache_0744(PF03572)ER
693979.Bache_1349(PF17170)ER
693979.Bache_1346(PF17170)ER
693979.Bache_0344(PF17170)ER
693979.Bache_2070(PF12437)(mitochondrial)
693979.Bache_0914(PF13402)ER
693979.Bache_0728(PF13415)ER
693979.Bache_2477(PF13905)ER
693979.Bache_2493(PF13905)ER
693979.Bache_1412(PF03959)ER
693979.Bache_0731(PF17170)ER
693979.Bache_2466(PF13320)ER
693979.Bache_3028(PF03572)ER
693979.Bache_1460(PF03572)ER
693979.Bache_1469(PF07971)ER
693979.Bache_2926(PF17170)ER
693979.Bache_0709PF00077ER
693979.Bache_1114(PF13905)ER
693979.Bache_1470(PF07971)(ER)
693979.Bache_1471(PF07971)ER
693979.Bache_1616(PF16889)ER
693979.Bache_1445(PF03572)ER
693979.Bache_0062(PF07971)ER
693979.Bache_1621(PF16332)ER
693979.Bache_0984(PF13905)ER
693979.Bache_0874(PF13905)ER
693979.Bache_0503(PF03200)ER
693979.Bache_0271(PF13402)ER
693979.Bache_0059(PF03200)(ER)
693979.Bache_0262(PF14771)ER
693979.Bache_1485(PF07971)ER
693979.Bache_1481(PF07971)ER
693979.Bache_1009PF01823ER
693979.Bache_1007(PF01094)ER
693979.Bache_2795(PF16355)ER
693979.Bache_1010PF01823ER
693979.Bache_1011PF01823ER
693979.Bache_0944(PF03572)ER
693979.Bache_0237(PF16355)ER
693979.Bache_0774(PF13320)ER
693979.Bache_1377(PF13905)ER
693979.Bache_0560(PF17170)ER
693979.Bache_0818(PF03572)ER
693979.Bache_0812(PF13905)ER
693979.Bache_1213(PF03572)(mitochondrial)
693979.Bache_0571(PF16011)ER
693979.Bache_2199(PF03572)ER
693979.Bache_2426PF01823(ER)
693979.Bache_1340(PF08011) (PF09820)
693979.Bache_2449(PF16889)(mitochondrial)
693979.Bache_1091(PF02971) (PF07837)
693979.Bache_1389(PF02838) (PF07555)
693979.Bache_1382(PF01715)(plastid)
693979.Bache_1706PF02357(mitochondrial)
693979.Bache_2113(PF08011)(mitochondrial)
693979.Bache_1959(PF08011) (PF09820)
693979.Bache_1958(PF08011) (PF09820)
693979.Bache_0958(PF08011) (PF09820)
693979.Bache_1960(PF08011) (PF09820)
693979.Bache_2425PF01823(mitochondrial)
693979.Bache_2605PF02357
693979.Bache_1516(PF03630)
693979.Bache_1498(PF05192)
693979.Bache_1088(PF05192)
693979.Bache_0137(PF03054)
693979.Bache_2018(PF05693)
693979.Bache_2460PF02357
693979.Bache_3026(PF03054)
693979.Bache_0396PF16269
693979.Bache_2120(PF04488)
693979.Bache_0093(PF16355)
693979.Bache_0679(PF05192)
693979.Bache_1044PF02357
693979.Bache_2110PF02357
693979.Bache_2112(PF09820)
693979.Bache_2234PF02357
693979.Bache_1936PF02357
693979.Bache_2685(PF16804)
693979.Bache_2960(PF04488)
693979.Bache_1493(PF01715)
693979.Bache_2151PF02357
693979.Bache_2798PF02357
693979.Bache_2973PF02357
693979.Bache_0545(PF05704)
693979.Bache_0558(PF03054)
693979.Bache_1194(PF16314)
693979.Bache_1982PF07959
693979.Bache_1359(PF02689)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================