Effective results for Bartonella clarridgeiae 73 (eggnog40)
Summary
Number of putative secreted proteins: 51
- Predicted by T4SEpre: 55
- Predicted by EffectiveELD: 3 eukaryotic-like domains, contained in 14 proteins (0 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
696125.BARCL_0290 | + | (mitochondrial); (plastid) | |||
696125.BARCL_0632 | (PF02661) | (mitochondrial); plastid | |||
696125.BARCL_1216 | + | ER | |||
696125.BARCL_1326 | + | ER | |||
696125.BARCL_0501 | + | ER | |||
696125.BARCL_0727 | (PF06455) | ER | |||
696125.BARCL_0385 | + | (mitochondrial) | |||
696125.BARCL_1333 | + | ER | |||
696125.BARCL_0882 | + | ER | |||
696125.BARCL_0715 | + | (ER) | |||
696125.BARCL_1063 | + | ER | |||
696125.BARCL_0630 | + | (PF02661) | |||
696125.BARCL_0631 | + | (PF02661) | |||
696125.BARCL_0640 | + | (PF02661) | |||
696125.BARCL_0139 | + | (mitochondrial) | |||
696125.BARCL_0138 | + | (ER) | |||
696125.BARCL_0629 | + | (PF02661) | |||
696125.BARCL_1284 | + | ||||
696125.BARCL_0202 | + | ||||
696125.BARCL_0740 | + | ||||
696125.BARCL_0635 | (PF02661) | ||||
696125.BARCL_0069 | (PF02661) | ||||
696125.BARCL_0398 | + | ||||
696125.BARCL_0960 | (PF02661) | ||||
696125.BARCL_1213 | + | ||||
696125.BARCL_1392 | + | ||||
696125.BARCL_1327 | + | ||||
696125.BARCL_0605 | (PF05704) | ||||
696125.BARCL_1031 | (PF02661) | ||||
696125.BARCL_1255 | + | ||||
696125.BARCL_1256 | + | ||||
696125.BARCL_1179 | + | ||||
696125.BARCL_1105 | + | ||||
696125.BARCL_0914 | + | ||||
696125.BARCL_0262 | (PF02661) | ||||
696125.BARCL_1203 | + | ||||
696125.BARCL_1249 | + | ||||
696125.BARCL_1246 | + | ||||
696125.BARCL_0884 | + | ||||
696125.BARCL_1342 | + | ||||
696125.BARCL_1062 | + | ||||
696125.BARCL_0992 | + | ||||
696125.BARCL_0988 | + | ||||
696125.BARCL_1117 | + | ||||
696125.BARCL_0639 | (PF02661) | ||||
696125.BARCL_1305 | + | ||||
696125.BARCL_0977 | + | ||||
696125.BARCL_0489 | + | ||||
696125.BARCL_0481 | + | ||||
696125.BARCL_0245 | (PF02661) | ||||
696125.BARCL_0480 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 2.0 (20/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 2.0 (20/10 KEGG proteins)