Metamenu

Effective results for Bradyrhizobiaceae bacterium SG-6C (eggnog40)

Summary

Number of putative secreted proteins: 138
- Predicted by T4SEpre: 84
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 70 proteins (1 high, 69 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
709797.CSIRO_1812+(PF13458)ER
709797.CSIRO_0723PF01822ER
709797.CSIRO_0725(PF13458)ER
709797.CSIRO_1819+mitochondrial
709797.CSIRO_2291(PF00839)ER
709797.CSIRO_3248(PF13458)ER
709797.CSIRO_3663(PF13458)ER
709797.CSIRO_2449+ER
709797.CSIRO_0976(PF13458)ER
709797.CSIRO_1238(PF13458)mitochondrial; (mitochondrial)
709797.CSIRO_2902+mitochondrial
709797.CSIRO_3479+(mitochondrial)
709797.CSIRO_2051(PF00839)ER
709797.CSIRO_2058(PF13458)ER
709797.CSIRO_3993(PF13458)ER
709797.CSIRO_1777+ER
709797.CSIRO_2023(PF13458)ER
709797.CSIRO_2155(PF13458)mitochondrial; (mitochondrial)
709797.CSIRO_2148(PF13458)ER
709797.CSIRO_2144(PF13458)(ER)
709797.CSIRO_3843+mitochondrial
709797.CSIRO_0308+mitochondrial
709797.CSIRO_1553+(mitochondrial); mitochondrial
709797.CSIRO_2007(PF13458)(ER)
709797.CSIRO_2005(PF12399)ER
709797.CSIRO_2344+ER
709797.CSIRO_3236+ER
709797.CSIRO_1894(PF12399)ER
709797.CSIRO_1892(PF13458)(mitochondrial)
709797.CSIRO_1312(PF14295)ER
709797.CSIRO_2573(PF13458)ER
709797.CSIRO_2204(PF13458)(ER)
709797.CSIRO_2685(PF13458)ER
709797.CSIRO_3965(PF13458)ER
709797.CSIRO_1433(PF13458)mitochondrial; ER
709797.CSIRO_1432(PF13458)ER; (ER)
709797.CSIRO_1431(PF13458)(ER)
709797.CSIRO_1430(PF13458)ER
709797.CSIRO_3104(PF13458)ER
709797.CSIRO_2362+ER
709797.CSIRO_3854+ER; (ER)
709797.CSIRO_4218(PF13458)(mitochondrial)
709797.CSIRO_2444+(mitochondrial)
709797.CSIRO_1423(PF13458)ER
709797.CSIRO_1426(PF12399)ER
709797.CSIRO_0114+ER; (ER)
709797.CSIRO_1296(PF13458)ER
709797.CSIRO_2998+(ER)
709797.CSIRO_2083(PF13458)ER
709797.CSIRO_2246(PF13458)ER
709797.CSIRO_1842+ER
709797.CSIRO_2666+(mitochondrial)
709797.CSIRO_3929(PF12399)(mitochondrial)
709797.CSIRO_3921(PF13458)ER
709797.CSIRO_0019(PF13458)ER
709797.CSIRO_3933(PF13458)ER
709797.CSIRO_0025(PF13458)ER; (ER)
709797.CSIRO_0735(PF13458)ER
709797.CSIRO_0855(PF12399)(mitochondrial)
709797.CSIRO_1868(PF13458)ER
709797.CSIRO_2357+(mitochondrial)
709797.CSIRO_3184+(plastid)
709797.CSIRO_0469+(mitochondrial)
709797.CSIRO_2207(PF12399)(mitochondrial)
709797.CSIRO_1630+(ER)
709797.CSIRO_1952(PF13458)plastid
709797.CSIRO_3962+(mitochondrial)
709797.CSIRO_2213+(PF13458)
709797.CSIRO_2743+(ER)
709797.CSIRO_0062(PF12399)(mitochondrial)
709797.CSIRO_2251(PF13458)(ER)
709797.CSIRO_4285+
709797.CSIRO_0505+
709797.CSIRO_1925+
709797.CSIRO_1241(PF12399)
709797.CSIRO_3660(PF12399)
709797.CSIRO_1028+
709797.CSIRO_3989(PF12399)
709797.CSIRO_3980+
709797.CSIRO_3477+
709797.CSIRO_1905+
709797.CSIRO_1904+
709797.CSIRO_3866+
709797.CSIRO_3998+
709797.CSIRO_1571+
709797.CSIRO_0791+
709797.CSIRO_3856+
709797.CSIRO_0954+
709797.CSIRO_1214+
709797.CSIRO_0310+
709797.CSIRO_0898(PF13458)
709797.CSIRO_4274+
709797.CSIRO_2001(PF12399)
709797.CSIRO_4275+
709797.CSIRO_0933+
709797.CSIRO_4221(PF12399)
709797.CSIRO_1414+
709797.CSIRO_2020+
709797.CSIRO_2571(PF12399)
709797.CSIRO_2208(PF12399)
709797.CSIRO_1882+
709797.CSIRO_1953(PF12399)
709797.CSIRO_3812(PF01442)
709797.CSIRO_1990+
709797.CSIRO_3968(PF12399)
709797.CSIRO_0268+
709797.CSIRO_1437(PF12399)
709797.CSIRO_3100(PF12399)
709797.CSIRO_0676+
709797.CSIRO_3069+
709797.CSIRO_0877+
709797.CSIRO_2447+
709797.CSIRO_1331+
709797.CSIRO_2923+
709797.CSIRO_2887+
709797.CSIRO_1040+
709797.CSIRO_3747+
709797.CSIRO_2653+
709797.CSIRO_3426+
709797.CSIRO_1074+
709797.CSIRO_2780+
709797.CSIRO_2867+
709797.CSIRO_2085(PF12399)
709797.CSIRO_2245(PF12399)
709797.CSIRO_3357+
709797.CSIRO_3924(PF12399)
709797.CSIRO_3435+
709797.CSIRO_0631(PF13458)
709797.CSIRO_1873(PF12399)
709797.CSIRO_1870(PF13458)
709797.CSIRO_0023(PF12399)
709797.CSIRO_1482(PF12399)
709797.CSIRO_2061(PF12399)
709797.CSIRO_2523+
709797.CSIRO_1335+
709797.CSIRO_4068+
709797.CSIRO_1336+
709797.CSIRO_2538+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.6 (6/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================