Metamenu

Effective results for Rubinisphaera brasiliensis DSM 5305 (eggnog40)

Summary

Number of putative secreted proteins: 345
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 43 eukaryotic-like domains, contained in 345 proteins (172 high, 173 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
756272.Plabr_3295PF06439 PF00884 PF16347ER
756272.Plabr_1201(PF08305) PF06439(ER)
756272.Plabr_3946(PF13385) (PF13088)ER
756272.Plabr_3306PF00884 PF16347ER
756272.Plabr_3307PF00884 PF16347ER
756272.Plabr_4312PF00884 PF16347ER
756272.Plabr_4647(PF14707) PF00884ER
756272.Plabr_1665(PF14707) PF00884ER
756272.Plabr_2968PF00884 PF16347ER
756272.Plabr_3217PF00884 PF16347ER
756272.Plabr_3983PF00884 PF16347ER
756272.Plabr_2972(PF14707) PF00884ER
756272.Plabr_1258PF00884 PF16347ER
756272.Plabr_2355PF00884 PF16347ER
756272.Plabr_3397PF00884 PF16347ER
756272.Plabr_3888PF00884 PF16347ER
756272.Plabr_3719(PF13365) (PF13180)ER
756272.Plabr_4703(PF13365) (PF13180)mitochondrial
756272.Plabr_4702(PF13365) (PF13180)ER
756272.Plabr_0659(PF14707) PF00884ER
756272.Plabr_3463PF00884 PF16347ER
756272.Plabr_1601(PF13365) (PF13180)ER; (ER)
756272.Plabr_1607PF00884 PF16347ER
756272.Plabr_0818PF00884 PF16347ER
756272.Plabr_0103(PF13365) (PF13180)ER
756272.Plabr_0119PF13360 (PF13570)ER
756272.Plabr_0767(PF02931) PF02932(ER)
756272.Plabr_3935PF00884 PF16347ER
756272.Plabr_3934PF00884 PF16347ER
756272.Plabr_2035PF13360 (PF13570)ER
756272.Plabr_4682(PF13365) (PF13180)ER
756272.Plabr_3813(PF07517) (PF01043)(mitochondrial); (plastid)
756272.Plabr_1548PF00884 PF16347ER
756272.Plabr_3890PF13360 (PF13570)ER
756272.Plabr_3778(PF13202) PF00884ER
756272.Plabr_4654(PF13365) (PF13180)ER
756272.Plabr_4095PF00884 PF16347ER
756272.Plabr_4785(PF13365) (PF13180)ER
756272.Plabr_1849(PF13202)(ER)
756272.Plabr_0555PF06439ER
756272.Plabr_2994(PF03417)ER
756272.Plabr_1443(PF01408)mitochondrial; (mitochondrial)
756272.Plabr_2497PF00884ER
756272.Plabr_2016PF13360ER
756272.Plabr_3781PF13405ER
756272.Plabr_3782(PF13202)ER
756272.Plabr_4267PF09825ER
756272.Plabr_0897(PF13428)(mitochondrial); (plastid)
756272.Plabr_3164PF00884ER
756272.Plabr_3165PF00884ER
756272.Plabr_3166PF06439ER
756272.Plabr_4793(PF13646)ER
756272.Plabr_3807PF00884(ER)
756272.Plabr_0526(PF13202)ER
756272.Plabr_0630PF00884ER
756272.Plabr_0632PF06439ER
756272.Plabr_2790PF13360ER
756272.Plabr_2177PF00884ER
756272.Plabr_3576PF06439ER
756272.Plabr_3575PF13360ER
756272.Plabr_3209PF06439ER
756272.Plabr_3754PF00884ER
756272.Plabr_3753PF00884mitochondrial
756272.Plabr_4415(PF13646)ER
756272.Plabr_3372PF00884ER
756272.Plabr_4329PF00884ER
756272.Plabr_3218PF00884ER
756272.Plabr_3997(PF05090)mitochondrial
756272.Plabr_1043(PF01457)ER
756272.Plabr_1044PF06439ER
756272.Plabr_1680PF00884ER
756272.Plabr_1917PF06439(ER)
756272.Plabr_3214PF00884ER
756272.Plabr_0535PF05705ER
756272.Plabr_3211PF00884ER
756272.Plabr_1593PF00884ER
756272.Plabr_0621(PF12006)ER
756272.Plabr_3918PF00884ER
756272.Plabr_2768PF06439ER
756272.Plabr_3173PF00884ER
756272.Plabr_2967PF00884ER
756272.Plabr_4331(PF13088)ER
756272.Plabr_3748PF13360ER
756272.Plabr_4750PF00884ER
756272.Plabr_1676PF00884ER
756272.Plabr_2777(PF13428)mitochondrial; (mitochondrial)
756272.Plabr_2971PF00884ER
756272.Plabr_2973PF00884ER
756272.Plabr_2974PF00884ER
756272.Plabr_2570PF13360ER
756272.Plabr_4500PF13360ER
756272.Plabr_2015(PF13646)ER
756272.Plabr_4431PF13360ER; (ER)
756272.Plabr_4762(PF16317)ER
756272.Plabr_0423PF00884ER
756272.Plabr_4297(PF01408)ER
756272.Plabr_1642(PF13646)ER
756272.Plabr_4269PF00884ER
756272.Plabr_2749PF13360ER
756272.Plabr_2744PF00884ER
756272.Plabr_3505(PF01487)mitochondrial; (mitochondrial)
756272.Plabr_4426(PF08305)ER
756272.Plabr_4199(PF13646)ER
756272.Plabr_4351PF06439ER
756272.Plabr_3237(PF13385)ER
756272.Plabr_3238PF00884ER
756272.Plabr_4779(PF13365)ER
756272.Plabr_4280PF09825(mitochondrial); mitochondrial
756272.Plabr_0079PF00884ER
756272.Plabr_1070PF00884ER
756272.Plabr_2917PF00884ER
756272.Plabr_R0045PF13360ER
756272.Plabr_2286(PF00432)ER
756272.Plabr_1926PF00884ER
756272.Plabr_3085PF00884ER
756272.Plabr_4160PF00884ER
756272.Plabr_3887PF13360ER; (ER)
756272.Plabr_3886PF06439ER
756272.Plabr_3240PF00884ER
756272.Plabr_0846PF13360ER
756272.Plabr_4704(PF08305)ER
756272.Plabr_0069(PF01408)mitochondrial
756272.Plabr_3861PF00884ER
756272.Plabr_3860PF00884ER
756272.Plabr_1826PF06439ER; (ER)
756272.Plabr_2435(PF00432)ER
756272.Plabr_2926PF06439ER
756272.Plabr_3526(PF13180)ER
756272.Plabr_3092PF00884ER
756272.Plabr_3093(PF13385)ER
756272.Plabr_3387PF06439ER
756272.Plabr_3704(PF13365)ER
756272.Plabr_1706PF00884ER
756272.Plabr_1704PF00884ER
756272.Plabr_1705PF00884ER
756272.Plabr_1830PF00884ER
756272.Plabr_1383(PF01408)(ER)
756272.Plabr_1380(PF13646)ER
756272.Plabr_0497PF13360ER
756272.Plabr_1527PF13360ER
756272.Plabr_4238(PF13385)mitochondrial; (mitochondrial)
756272.Plabr_0462PF13885ER
756272.Plabr_0399(PF13385)ER
756272.Plabr_1286PF13360ER
756272.Plabr_1285PF13360ER
756272.Plabr_1351(PF13180)ER
756272.Plabr_3210PF00884ER
756272.Plabr_2416PF13360(ER)
756272.Plabr_2092PF00884ER
756272.Plabr_2893PF06439ER
756272.Plabr_2899PF12580ER
756272.Plabr_2898(PF13385)ER
756272.Plabr_3079PF00884ER
756272.Plabr_3075(PF13385)ER
756272.Plabr_4157PF00884ER
756272.Plabr_2670(PF13180)ER
756272.Plabr_0817PF06439ER
756272.Plabr_3296PF00884ER
756272.Plabr_3297PF00884ER
756272.Plabr_3107PF09825ER
756272.Plabr_0927(PF13180)(ER)
756272.Plabr_3859PF00884ER
756272.Plabr_3857PF00884ER
756272.Plabr_0106PF06439ER
756272.Plabr_0104(PF13202)ER
756272.Plabr_1722(PF03417)ER
756272.Plabr_1610PF13360ER
756272.Plabr_1612PF06439ER
756272.Plabr_1613PF00884ER
756272.Plabr_1509PF00884ER
756272.Plabr_2085PF00884ER
756272.Plabr_2884PF00884ER
756272.Plabr_3596(PF13385)ER
756272.Plabr_2404PF00884(ER); plastid
756272.Plabr_3446PF00884ER
756272.Plabr_3445(PF13646)ER
756272.Plabr_2663PF00884ER
756272.Plabr_3207(PF01408)ER
756272.Plabr_4233PF00884ER
756272.Plabr_4234(PF13088)ER
756272.Plabr_3133PF00884ER
756272.Plabr_4057PF00884ER
756272.Plabr_1976(PF01408)(mitochondrial)
756272.Plabr_1979(PF01408)(ER)
756272.Plabr_3208PF00884ER
756272.Plabr_3205PF13360ER
756272.Plabr_1406PF13360ER
756272.Plabr_2696(PF08305)ER
756272.Plabr_4224(PF01408)mitochondrial; (mitochondrial)
756272.Plabr_3635PF00884ER
756272.Plabr_0168(PF01408)mitochondrial; (plastid)
756272.Plabr_1364PF00884ER
756272.Plabr_1365(PF13385)ER
756272.Plabr_1413(PF13088)ER
756272.Plabr_2197PF06439ER
756272.Plabr_3936PF00884(mitochondrial)
756272.Plabr_3154PF00884ER
756272.Plabr_3808PF00884(ER)
756272.Plabr_1171(PF13180)ER
756272.Plabr_0172PF00884ER
756272.Plabr_0682PF06439ER
756272.Plabr_1776PF06439ER
756272.Plabr_1317(PF13365)ER
756272.Plabr_1083PF06439ER
756272.Plabr_1227PF13360ER; (ER)
756272.Plabr_3774(PF13202)ER
756272.Plabr_3894PF00884ER
756272.Plabr_4278(PF03417)ER
756272.Plabr_2856PF00884ER
756272.Plabr_2037PF13360ER
756272.Plabr_2321PF13360ER
756272.Plabr_3325(PF13365)ER
756272.Plabr_3920(PF13646)ER
756272.Plabr_3928PF00884ER
756272.Plabr_2687PF00884ER
756272.Plabr_1168(PF13646)ER; (ER)
756272.Plabr_2443PF13360(ER); (mitochondrial)
756272.Plabr_3965(PF05711)mitochondrial; (mitochondrial)
756272.Plabr_3776(PF13202)ER
756272.Plabr_0206(PF13365)ER
756272.Plabr_4279PF09825ER
756272.Plabr_4308PF00884ER
756272.Plabr_3171PF00884ER
756272.Plabr_3170PF00884ER
756272.Plabr_3174PF00884ER
756272.Plabr_0850(PF01609)(mitochondrial)
756272.Plabr_3206(PF01408)(ER)
756272.Plabr_2105(PF13365) (PF13180)
756272.Plabr_1058(PF01408)(mitochondrial)
756272.Plabr_1057(PF01408)(ER)
756272.Plabr_2624(PF13180)(mitochondrial)
756272.Plabr_3494(PF13202)(plastid)
756272.Plabr_0280(PF01408)(ER)
756272.Plabr_2649PF13360plastid
756272.Plabr_1029(PF01609)(mitochondrial)
756272.Plabr_1730PF13360(mitochondrial)
756272.Plabr_4737(PF07517) (PF01043)
756272.Plabr_2878(PF13365) (PF13180)
756272.Plabr_2693(PF13646)(plastid)
756272.Plabr_0906(PF07517) (PF01043)
756272.Plabr_1969(PF13180)(plastid)
756272.Plabr_0764(PF01609)(mitochondrial)
756272.Plabr_1085PF00884 PF16347
756272.Plabr_1942PF13360plastid
756272.Plabr_4219(PF13385)
756272.Plabr_1448(PF10143)
756272.Plabr_2945(PF01408)
756272.Plabr_4518PF13360
756272.Plabr_3785(PF01609)
756272.Plabr_0892PF00884
756272.Plabr_2226(PF00432)
756272.Plabr_2952(PF01609)
756272.Plabr_2487(PF01408)
756272.Plabr_2178(PF01408)
756272.Plabr_0956PF05491
756272.Plabr_4634(PF01408)
756272.Plabr_1268(PF13385)
756272.Plabr_1466(PF01609)
756272.Plabr_1469(PF13385)
756272.Plabr_3369(PF01609)
756272.Plabr_2969PF06439
756272.Plabr_2616(PF09445)
756272.Plabr_3215(PF13385)
756272.Plabr_1907(PF16912)
756272.Plabr_1589(PF01609)
756272.Plabr_1470(PF13385)
756272.Plabr_2773(PF01408)
756272.Plabr_2970(PF01408)
756272.Plabr_2978(PF13385)
756272.Plabr_3518(PF13180)
756272.Plabr_2389(PF12006)
756272.Plabr_0332(PF01408)
756272.Plabr_4292(PF01408)
756272.Plabr_1242(PF13180)
756272.Plabr_4513(PF01609)
756272.Plabr_0072(PF01408)
756272.Plabr_0071(PF10143)
756272.Plabr_1074(PF13180)
756272.Plabr_2755(PF01408)
756272.Plabr_3539(PF01408)
756272.Plabr_3667(PF01487)
756272.Plabr_3243(PF01609)
756272.Plabr_3718(PF13180)
756272.Plabr_0067(PF05090)
756272.Plabr_1000(PF13428)
756272.Plabr_0715(PF01609)
756272.Plabr_1624(PF01408)
756272.Plabr_0718(PF13385)
756272.Plabr_1626(PF01408)
756272.Plabr_3529(PF13646)
756272.Plabr_4374(PF13646)
756272.Plabr_4003(PF13365)
756272.Plabr_0011(PF00432)
756272.Plabr_0498PF13360
756272.Plabr_0726(PF01609)
756272.Plabr_2399PF13360
756272.Plabr_2641(PF01408)
756272.Plabr_0869(PF09861)
756272.Plabr_0007(PF00862)
756272.Plabr_1026(PF05090)
756272.Plabr_3842(PF01609)
756272.Plabr_0397(PF01408)
756272.Plabr_3220(PF01408)
756272.Plabr_0131(PF05711)
756272.Plabr_1731(PF01609)
756272.Plabr_1281PF13360
756272.Plabr_2258(PF09861)
756272.Plabr_2251PF04034
756272.Plabr_2707(PF01408)
756272.Plabr_2704(PF09861)
756272.Plabr_0925(PF13385)
756272.Plabr_0746(PF01609)
756272.Plabr_2403PF00884
756272.Plabr_3444PF00884
756272.Plabr_0931(PF13646)
756272.Plabr_3971(PF00432)
756272.Plabr_4527(PF01408)
756272.Plabr_2619(PF01408)
756272.Plabr_2276(PF10013)not used
756272.Plabr_3688(PF13646)
756272.Plabr_2187(PF01408)
756272.Plabr_2182PF13360
756272.Plabr_4136(PF01609)
756272.Plabr_2988(PF13385)
756272.Plabr_3630(PF01408)
756272.Plabr_0909(PF01408)
756272.Plabr_0343(PF01609)
756272.Plabr_1961(PF01609)
756272.Plabr_2437(PF13646)
756272.Plabr_4677PF04144
756272.Plabr_1173(PF13385)
756272.Plabr_0684(PF01609)
756272.Plabr_1951(PF01609)
756272.Plabr_1950(PF13646)
756272.Plabr_2851(PF13646)
756272.Plabr_2524PF05491
756272.Plabr_4117(PF01609)
756272.Plabr_3140(PF13088)
756272.Plabr_0543(PF01609)
756272.Plabr_1541(PF01408)
756272.Plabr_2201(PF13365)
756272.Plabr_3552(PF16912)
756272.Plabr_3953(PF08695)
756272.Plabr_1152PF05491
756272.Plabr_0151(PF13180)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================