Effective results for Streptococcus macacae NCTC 11558 (eggnog40)
Summary
Number of putative secreted proteins: 81
- Predicted by T4SEpre: 87
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 11 proteins (1 high, 10 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
764298.STRMA_1552 | + | (PF02938) | mitochondrial | ||
764298.STRMA_0414 | + | ER | |||
764298.STRMA_0415 | + | ER | |||
764298.STRMA_1734 | + | mitochondrial | |||
764298.STRMA_1392 | + | ER | |||
764298.STRMA_0601 | + | ER; (ER) | |||
764298.STRMA_0028 | + | ER | |||
764298.STRMA_1074 | + | ER | |||
764298.STRMA_0075 | + | mitochondrial | |||
764298.STRMA_0615 | + | ER | |||
764298.STRMA_1887 | (PF05257) | ER | |||
764298.STRMA_0918 | + | ER | |||
764298.STRMA_0043 | + | (ER) | |||
764298.STRMA_1612 | + | ER | |||
764298.STRMA_0939 | + | ER | |||
764298.STRMA_1195 | + | ER | |||
764298.STRMA_1522 | + | (mitochondrial) | |||
764298.STRMA_1640 | (PF05257) | ER | |||
764298.STRMA_0540 | + | ER | |||
764298.STRMA_0306 | + | ER | |||
764298.STRMA_0974 | + | mitochondrial; (mitochondrial) | |||
764298.STRMA_0379 | + | ER | |||
764298.STRMA_1487 | (PF13787) | ER | |||
764298.STRMA_0752 | + | ER | |||
764298.STRMA_0427 | + | (ER) | |||
764298.STRMA_0184 | (PF08840) | ER | |||
764298.STRMA_1601 | + | ER | |||
764298.STRMA_1604 | + | mitochondrial | |||
764298.STRMA_0505 | (PF05257) | ER | |||
764298.STRMA_1676 | (PF13787) | ER | |||
764298.STRMA_1638 | + | ER | |||
764298.STRMA_1678 | + | (mitochondrial) | |||
764298.STRMA_1356 | + | ER | |||
764298.STRMA_0896 | + | ER; (ER) | |||
764298.STRMA_0002 | + | ER | |||
764298.STRMA_1389 | + | ER | |||
764298.STRMA_0060 | + | (plastid) | |||
764298.STRMA_0469 | + | (plastid) | |||
764298.STRMA_1324 | + | (mitochondrial) | |||
764298.STRMA_0736 | + | (mitochondrial) | |||
764298.STRMA_0708 | + | ||||
764298.STRMA_0118 | + | ||||
764298.STRMA_0288 | + | ||||
764298.STRMA_0915 | + | ||||
764298.STRMA_0914 | + | ||||
764298.STRMA_0823 | PF02916 | ||||
764298.STRMA_1713 | + | ||||
764298.STRMA_0599 | + | ||||
764298.STRMA_0837 | (PF08840) | ||||
764298.STRMA_1002 | + | ||||
764298.STRMA_0457 | + | ||||
764298.STRMA_0452 | + | ||||
764298.STRMA_0120 | + | ||||
764298.STRMA_0022 | + | ||||
764298.STRMA_1683 | + | ||||
764298.STRMA_0920 | + | ||||
764298.STRMA_1458 | + | ||||
764298.STRMA_0556 | + | ||||
764298.STRMA_0317 | + | ||||
764298.STRMA_1167 | + | ||||
764298.STRMA_1165 | + | ||||
764298.STRMA_0301 | + | ||||
764298.STRMA_1493 | + | ||||
764298.STRMA_0764 | + | ||||
764298.STRMA_0247 | + | ||||
764298.STRMA_1952 | + | ||||
764298.STRMA_1953 | + | ||||
764298.STRMA_1486 | + | ||||
764298.STRMA_1766 | + | ||||
764298.STRMA_0360 | + | ||||
764298.STRMA_1588 | + | ||||
764298.STRMA_0229 | + | ||||
764298.STRMA_1579 | + | ||||
764298.STRMA_1376 | + | ||||
764298.STRMA_0428 | + | ||||
764298.STRMA_0869 | + | ||||
764298.STRMA_1282 | (PF02938) | ||||
764298.STRMA_0397 | + | ||||
764298.STRMA_1925 | (PF05257) | ||||
764298.STRMA_0897 | + | ||||
764298.STRMA_0007 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: NO (FDR = 0.5 %)
- Functional Type III secretion system: N.D.
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0 (0/0 KEGG proteins)
- Functional Type VI secretion system: N.D.
Individual results for each secretion system
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0 (0/0 KEGG proteins)