Effective results for Prevotella marshii DSM 16973 = JCM 13450 (eggnog40)

Summary

Number of putative secreted proteins: 48
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 48 proteins (3 high, 45 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
862515.HMPREF0658_1157				PF12812	ER
862515.HMPREF0658_0154				(PF13306)	ER
862515.HMPREF0658_0948				(PF13306)	ER
862515.HMPREF0658_1059				(PF13306)	ER
862515.HMPREF0658_1450				(PF05704)	(mitochondrial)
862515.HMPREF0658_1854				(PF00328)	ER
862515.HMPREF0658_0736				(PF13306)	ER
862515.HMPREF0658_0148				(PF13306)	ER
862515.HMPREF0658_0049				(PF13306)	ER
862515.HMPREF0658_0268				(PF03051)	ER
862515.HMPREF0658_1794				(PF13306)	ER
862515.HMPREF0658_2038				(PF13306)	ER
862515.HMPREF0658_1125				(PF03432)	(mitochondrial)
862515.HMPREF0658_0081				(PF13306)	ER
862515.HMPREF0658_0653				(PF00328)	ER
862515.HMPREF0658_1740				(PF03051)	ER
862515.HMPREF0658_0421				(PF13306)	ER
862515.HMPREF0658_1916				(PF13306)	ER
862515.HMPREF0658_1761				(PF13306)	(ER)
862515.HMPREF0658_2114				(PF13306)	ER
862515.HMPREF0658_0994				(PF01715)	(plastid)
862515.HMPREF0658_1705				(PF05034) (PF07476)
862515.HMPREF0658_1360				(PF02971) (PF07837)
862515.HMPREF0658_1871				PF03128	mitochondrial; not used
862515.HMPREF0658_1312				(PF13155) (PF01807)
862515.HMPREF0658_0678				(PF13155) (PF01807)
862515.HMPREF0658_0787				(PF13155) (PF01807)
862515.HMPREF0658_1127				(PF13155) (PF01807)
862515.HMPREF0658_0992				(PF02689)
862515.HMPREF0658_0998				(PF13306)
862515.HMPREF0658_0761				(PF13155)
862515.HMPREF0658_1963				(PF04991)
862515.HMPREF0658_0141				(PF16314)
862515.HMPREF0658_0811				(PF14771)
862515.HMPREF0658_1817				(PF03051)
862515.HMPREF0658_0556				(PF03432)
862515.HMPREF0658_1045				(PF03630)
862515.HMPREF0658_0008				(PF03432)
862515.HMPREF0658_0006				(PF13155)
862515.HMPREF0658_0225				(PF01715)
862515.HMPREF0658_1193				(PF13155)
862515.HMPREF0658_1195				(PF03432)
862515.HMPREF0658_2195				PF16269
862515.HMPREF0658_1703				(PF14330)
862515.HMPREF0658_1686				(PF04991)
862515.HMPREF0658_1747				(PF04991)
862515.HMPREF0658_1215				(PF03432)
862515.HMPREF0658_2069				(PF05693)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================