Metamenu

Effective results for Neisseria bacilliformis ATCC BAA-1200 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 19 proteins (0 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
888742.HMPREF9123_0072(PF12762)ER; (ER)
888742.HMPREF9123_1414(PF01679)ER
888742.HMPREF9123_1250(PF01679)ER
888742.HMPREF9123_0516(PF06472)ER
888742.HMPREF9123_2710(PF06472)mitochondrial
888742.HMPREF9123_0225(PF03083)(mitochondrial)
888742.HMPREF9123_0083(PF12762)(mitochondrial)
888742.HMPREF9123_1153(PF04383)
888742.HMPREF9123_2219(PF05167)
888742.HMPREF9123_1999(PF05167)
888742.HMPREF9123_2964(PF12762)
888742.HMPREF9123_0073(PF12762)
888742.HMPREF9123_0689(PF14832)
888742.HMPREF9123_2233(PF06472)
888742.HMPREF9123_2534(PF11969)
888742.HMPREF9123_1135(PF04383)
888742.HMPREF9123_1746(PF03083)
888742.HMPREF9123_1100(PF04383)
888742.HMPREF9123_0517(PF06472)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
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