228399.appser1_19010	PF00333	Ribosomal protein S5, N-terminal domain	11
228399.appser1_19010	PF03719	Ribosomal protein S5, C-terminal domain	11
228399.appser1_3430	PF01717	Cobalamin-independent synthase, Catalytic domain	5
228399.appser1_6750	PF03484	tRNA synthetase B5 domain	6
228399.appser1_6750	PF03147	Ferredoxin-fold anticodon binding domain	4
228399.Aple02002245	PF10150	Ribonuclease E/G family	6
228399.appser1_20980	PF04127	DNA / pantothenate metabolism flavoprotein	4
228399.appser1_7910	PF13710	ACT domain	5
228399.appser1_7590	PF00696	Amino acid kinase family	6
228399.appser1_12400	PF00849	RNA pseudouridylate synthase	5
228399.appser1_12400	PF01479	S4 domain	4
228399.appser1_10890	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	5
228399.appser1_2410	PF02824	TGS domain	5
228399.appser1_3350	PF00899	ThiF family	4
228399.appser1_12530	PF02367	Threonylcarbamoyl adenosine biosynthesis protein TsaE	12
228399.appser1_13330	PF03595	Voltage-dependent anion channel	5
228399.appser1_13930	PF00575	S1 RNA binding domain	5
228399.appser1_6240	PF05872	Bacterial protein of unknown function (DUF853)	5
228399.appser1_13750	PF00939	Sodium:sulfate symporter transmembrane region	6
228399.Aple02000636	PF04127	DNA / pantothenate metabolism flavoprotein	4
228399.Aple02000121	PF00849	RNA pseudouridylate synthase	5
228399.Aple02001409	PF03144	Elongation factor Tu domain 2	5
228399.Aple02001409	PF00009	Elongation factor Tu GTP binding domain	6
228399.Aple02000127	PF02403	Seryl-tRNA synthetase N-terminal domain	4
228399.Aple02000126	PF01668	SmpB protein	7
228399.appser1_9430	PF01121	Dephospho-CoA kinase	6
228399.Aple02001658	PF00696	Amino acid kinase family	6
228399.Aple02000255	PF01207	Dihydrouridine synthase (Dus)	5
228399.Aple02002140	PF00237	Ribosomal protein L22p/L17e	9
228399.Aple02001727	PF06250	Protein of unknown function (DUF1016)	8
228399.Aple02000385	PF03144	Elongation factor Tu domain 2	5
228399.Aple02000385	PF00009	Elongation factor Tu GTP binding domain	6
228399.Aple02000381	PF06071	Protein of unknown function (DUF933)	6
228399.Aple02001898	PF00209	Sodium:neurotransmitter symporter family	5
228399.Aple02002147	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24	8
228399.Aple02000414	PF00308	Bacterial dnaA  protein	5
228399.Aple02000417	PF03462	PCRF domain	7
228399.Aple02001477	PF01171	PP-loop family	4
228399.Aple02001473	PF01171	PP-loop family	4
228399.Aple02001074	PF01743	Poly A polymerase head domain	5
228399.Aple02001074	PF12627	Probable RNA and SrmB- binding site of polymerase A	5
228399.appser1_9290	PF00849	RNA pseudouridylate synthase	5
228399.Aple02001388	PF05167	Uncharacterised ACR (DUF711)	6
228399.appser1_18640	PF10576	Iron-sulfur binding domain of endonuclease III	5
228399.appser1_4240	PF03449	Transcription elongation factor, N-terminal	5
228399.appser1_10650	PF13718	GNAT acetyltransferase 2	12
228399.appser1_10650	PF02130	Uncharacterized protein family UPF0054	20
228399.appser1_4800	PF05496	Holliday junction DNA helicase ruvB N-terminus	5
228399.appser1_17880	PF05025	RbsD / FucU transport protein family	5
228399.appser1_3600	PF02769	AIR synthase related protein, C-terminal domain	6
228399.appser1_3600	PF00586	AIR synthase related protein, N-terminal domain	4
228399.appser1_19060	PF00416	Ribosomal protein S13/S18	10
228399.appser1_3420	PF00156	Phosphoribosyl transferase domain	4
228399.appser1_14150	PF00595	PDZ domain (Also known as DHR or GLGF)	6
228399.Aple02002122	PF13718	GNAT acetyltransferase 2	12
228399.Aple02002122	PF02130	Uncharacterized protein family UPF0054	20
228399.appser1_14370	PF01479	S4 domain	4
228399.appser1_10900	PF01755	Glycosyltransferase family 25 (LPS biosynthesis protein)	13
228399.appser1_7720	PF00696	Amino acid kinase family	6
228399.appser1_6740	PF01409	tRNA synthetases class II core domain (F)	5
228399.appser1_6740	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain	6
228399.Aple02000375	PF01018	GTP1/OBG	5
228399.appser1_18960	PF00673	ribosomal L5P family C-terminus	11
228399.appser1_18960	PF00281	Ribosomal protein L5	11
228399.Aple02000872	PF03144	Elongation factor Tu domain 2	5
228399.appser1_19670	PF00009	Elongation factor Tu GTP binding domain	6
228399.appser1_1550	PF00710	Asparaginase, N-terminal	4
228399.Aple02000135	PF01121	Dephospho-CoA kinase	6
228399.Aple02000131	PF08264	Anticodon-binding domain of tRNA	6
228399.Aple02000131	PF00133	tRNA synthetases class I (I, L, M and V)	4
228399.Aple02000131	PF13603	Leucyl-tRNA synthetase, Domain 2	5
228399.appser1_2770	PF00156	Phosphoribosyl transferase domain	4
228399.Aple02000240	PF00156	Phosphoribosyl transferase domain	4
228399.Aple02000247	PF05958	tRNA (Uracil-5-)-methyltransferase	8
228399.Aple02000719	PF04172	LrgB-like family	4
228399.Aple02000626	PF05958	tRNA (Uracil-5-)-methyltransferase	8
228399.Aple02000625	PF05958	tRNA (Uracil-5-)-methyltransferase	8
228399.Aple02001710	PF01491	Frataxin-like domain	4
228399.Aple02000392	PF00091	Tubulin/FtsZ family, GTPase domain	5
228399.Aple02000392	PF12327	FtsZ family, C-terminal domain	6
228399.Aple02000396	PF02875	Mur ligase family, glutamate ligase domain	4
228399.Aple02000396	PF08245	Mur ligase middle domain	5
228399.Aple02000396	PF01225	Mur ligase family, catalytic domain	6
228399.Aple02000399	PF02875	Mur ligase family, glutamate ligase domain	4
228399.Aple02000399	PF08245	Mur ligase middle domain	5
228399.appser1_21670	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	5
228399.Aple02000402	PF02875	Mur ligase family, glutamate ligase domain	4
228399.Aple02000402	PF08245	Mur ligase middle domain	5
228399.Aple02000402	PF01225	Mur ligase family, catalytic domain	6
228399.Aple02000401	PF02875	Mur ligase family, glutamate ligase domain	4
228399.Aple02000401	PF08245	Mur ligase middle domain	5
228399.Aple02000401	PF01225	Mur ligase family, catalytic domain	6
228399.Aple02000407	PF08496	Peptidase family S49 N-terminal	5
228399.Aple02000405	PF01795	MraW methylase family	5
228399.appser1_250	PF01795	MraW methylase family	5
228399.Aple02000248	PF00899	ThiF family	4
228399.appser1_17200	PF02410	Ribosomal silencing factor during starvation	6
228399.Aple02001040	PF10385	RNA polymerase beta subunit external 1 domain	5
228399.Aple02001040	PF04563	RNA polymerase beta subunit	5
228399.Aple02001040	PF04560	RNA polymerase Rpb2, domain 7	5
228399.Aple02001040	PF04561	RNA polymerase Rpb2, domain 2	5
228399.Aple02001040	PF00562	RNA polymerase Rpb2, domain 6	5
228399.Aple02001040	PF04565	RNA polymerase Rpb2, domain 3	5
228399.Aple02001280	PF03449	Transcription elongation factor, N-terminal	5
228399.appser1_21320	PF00156	Phosphoribosyl transferase domain	4
228399.appser1_9190	PF01717	Cobalamin-independent synthase, Catalytic domain	5
228399.appser1_18670	PF02881	SRP54-type protein, helical bundle domain	6
228399.appser1_18670	PF02978	Signal peptide binding domain	6
228399.appser1_9350	PF02403	Seryl-tRNA synthetase N-terminal domain	4
228399.appser1_4810	PF00950	ABC 3 transport family	5
228399.appser1_4650	PF00156	Phosphoribosyl transferase domain	4
228399.Aple02001897	PF00209	Sodium:neurotransmitter symporter family	5
228399.appser1_19070	PF00411	Ribosomal protein S11	11
228399.Aple02002006	PF00575	S1 RNA binding domain	5
228399.Aple02002007	PF02224	Cytidylate kinase	4
228399.Aple02001511	PF00986	DNA gyrase B subunit, carboxyl terminus	5
228399.Aple02001511	PF00204	DNA gyrase B	5
228399.Aple02002002	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family	5
228399.appser1_3090	PF03989	DNA gyrase C-terminal domain, beta-propeller	5
228399.appser1_3090	PF00521	DNA gyrase/topoisomerase IV, subunit A	5
228399.appser1_14740	PF03848	Tellurite resistance protein TehB	6
228399.Aple02002138	PF03947	Ribosomal Proteins L2, C-terminal domain	7
228399.Aple02002138	PF00181	Ribosomal Proteins L2, RNA binding domain	7
228399.Aple02002139	PF00203	Ribosomal protein S19	8
228399.Aple02002134	PF00338	Ribosomal protein S10p/S20e	10
228399.Aple02002135	PF00297	Ribosomal protein L3	10
228399.Aple02002136	PF00573	Ribosomal protein L4/L1 family	8
228399.appser1_16220	PF05697	Bacterial trigger factor protein (TF)	6
228399.appser1_3890	PF00849	RNA pseudouridylate synthase	5
228399.appser1_3890	PF01479	S4 domain	4
228399.Aple02000936	PF03222	Tryptophan/tyrosine permease family	7
228399.appser1_18060	PF05025	RbsD / FucU transport protein family	5
228399.Aple02000937	PF03222	Tryptophan/tyrosine permease family	7
228399.Aple02000892	PF05025	RbsD / FucU transport protein family	5
228399.Aple02000896	PF13507	CobB/CobQ-like glutamine amidotransferase domain	5
228399.Aple02000896	PF02769	AIR synthase related protein, C-terminal domain	6
228399.appser1_15340	PF03222	Tryptophan/tyrosine permease family	7
228399.appser1_6060	PF07650	KH domain	9
228399.appser1_12350	PF01491	Frataxin-like domain	4
228399.appser1_19440	PF01197	Ribosomal protein L31	5
228399.appser1_20920	PF03819	MazG nucleotide pyrophosphohydrolase domain	5
228399.Aple02000276	PF03989	DNA gyrase C-terminal domain, beta-propeller	5
228399.Aple02000276	PF00521	DNA gyrase/topoisomerase IV, subunit A	5
228399.Aple02000278	PF05496	Holliday junction DNA helicase ruvB N-terminus	5
228399.Aple02000278	PF05491	Holliday junction DNA helicase ruvB C-terminus	6
228399.Aple02001707	PF00814	Glycoprotease family	6
228399.Aple02000879	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family	5
228399.Aple02001705	PF00849	RNA pseudouridylate synthase	5
228399.Aple02001705	PF01479	S4 domain	4
228399.Aple02001355	PF16320	Ribosomal protein L7/L12 dimerisation domain	8
228399.appser1_310	PF02875	Mur ligase family, glutamate ligase domain	4
228399.appser1_310	PF08245	Mur ligase middle domain	5
228399.Aple02000478	PF01281	Ribosomal protein L9, N-terminal domain	8
228399.Aple02000478	PF03948	Ribosomal protein L9, C-terminal domain	8
228399.appser1_21680	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	5
228399.appser1_19480	PF13291	ACT domain	4
228399.appser1_19480	PF02824	TGS domain	5
228399.Aple02001900	PF01578	Cytochrome C assembly protein	6
228399.Aple02001050	PF06250	Protein of unknown function (DUF1016)	8
228399.appser1_12910	PF02844	Phosphoribosylglycinamide synthetase, N domain	4
228399.appser1_12910	PF02843	Phosphoribosylglycinamide synthetase, C domain	4
228399.appser1_12910	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain	10
228399.Aple02001291	PF03595	Voltage-dependent anion channel	5
228399.appser1_10580	PF03449	Transcription elongation factor, N-terminal	5
228399.appser1_4620	PF00764	Arginosuccinate synthase	6
228399.appser1_5930	PF00899	ThiF family	4
228399.appser1_3390	PF00849	RNA pseudouridylate synthase	5
228399.appser1_19040	PF00344	SecY translocase	5
228399.appser1_10850	PF01171	PP-loop family	4
228399.appser1_3570	PF12327	FtsZ family, C-terminal domain	6
228399.Aple02002104	PF00764	Arginosuccinate synthase	6
228399.Aple02002101	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	5
228399.appser1_14300	PF06250	Protein of unknown function (DUF1016)	8
228399.appser1_12740	PF00939	Sodium:sulfate symporter transmembrane region	6
228399.Aple02002213	PF00009	Elongation factor Tu GTP binding domain	6
228399.appser1_7410	PF00156	Phosphoribosyl transferase domain	4
228399.appser1_1710	PF00268	Ribonucleotide reductase, small chain	5
228399.appser1_13760	PF00986	DNA gyrase B subunit, carboxyl terminus	5
228399.appser1_13760	PF00204	DNA gyrase B	5
228399.appser1_1480	PF00950	ABC 3 transport family	5
228399.appser1_18870	PF03947	Ribosomal Proteins L2, C-terminal domain	7
228399.appser1_18870	PF00181	Ribosomal Proteins L2, RNA binding domain	7
228399.Aple02000268	PF00899	ThiF family	4
228399.Aple02001847	PF00696	Amino acid kinase family	6
228399.Aple02001840	PF03819	MazG nucleotide pyrophosphohydrolase domain	5
228399.Aple02001842	PF08245	Mur ligase middle domain	5
228399.appser1_2620	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	5
228399.appser1_1130	PF13710	ACT domain	5
228399.Aple02000469	PF00849	RNA pseudouridylate synthase	5
228399.Aple02000469	PF01479	S4 domain	4
228399.Aple02000464	PF01717	Cobalamin-independent synthase, Catalytic domain	5
228399.Aple02000465	PF00939	Sodium:sulfate symporter transmembrane region	6
228399.Aple02000466	PF00939	Sodium:sulfate symporter transmembrane region	6
228399.appser1_18900	PF07650	KH domain	9
228399.appser1_18900	PF00189	Ribosomal protein S3, C-terminal domain	10
228399.Aple02001115	PF00710	Asparaginase, N-terminal	4
228399.Aple02001114	PF06418	CTP synthase N-terminus	6
228399.Aple02000956	PF03989	DNA gyrase C-terminal domain, beta-propeller	5
228399.Aple02000956	PF00521	DNA gyrase/topoisomerase IV, subunit A	5
228399.appser1_230	PF08496	Peptidase family S49 N-terminal	5
228399.appser1_21080	PF05958	tRNA (Uracil-5-)-methyltransferase	8
228399.Aple02001728	PF06250	Protein of unknown function (DUF1016)	8
228399.Aple02001025	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	5
228399.Aple02001021	PF01207	Dihydrouridine synthase (Dus)	5
228399.Aple02000382	PF01195	Peptidyl-tRNA hydrolase	6
228399.appser1_16300	PF03918	Cytochrome C biogenesis protein	6
228399.Aple02001935	PF01016	Ribosomal L27 protein	7
228399.Aple02001934	PF00829	Ribosomal prokaryotic L21 protein	6
228399.appser1_18610	PF03749	Sugar fermentation stimulation protein	6
228399.Aple02001339	PF10571	Uncharacterised protein family UPF0547	13
228399.appser1_9390	PF08264	Anticodon-binding domain of tRNA	6
228399.appser1_9390	PF00133	tRNA synthetases class I (I, L, M and V)	4
228399.appser1_9390	PF13603	Leucyl-tRNA synthetase, Domain 2	5
228399.appser1_4520	PF00595	PDZ domain (Also known as DHR or GLGF)	6
228399.appser1_20540	PF01142	tRNA pseudouridine synthase D (TruD)	4
228399.appser1_18020	PF13507	CobB/CobQ-like glutamine amidotransferase domain	5
228399.appser1_18020	PF02769	AIR synthase related protein, C-terminal domain	6
228399.appser1_18940	PF00238	Ribosomal protein L14p/L23e	11
228399.appser1_3360	PF05958	tRNA (Uracil-5-)-methyltransferase	8
228399.Aple02002023	PF03144	Elongation factor Tu domain 2	5
228399.Aple02002023	PF00009	Elongation factor Tu GTP binding domain	6
228399.Aple02002020	PF01138	3' exoribonuclease family, domain 1	4
228399.Aple02002020	PF03725	3' exoribonuclease family, domain 2	4
228399.Aple02002290	PF03253	Urea transporter	8
228399.appser1_3500	PF03462	PCRF domain	7
228399.appser1_11880	PF08538	Protein of unknown function (DUF1749)	19
228399.Aple02002114	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain	10
228399.appser1_3180	PF00899	ThiF family	4
228399.appser1_10930	PF01197	Ribosomal protein L31	5
228399.appser1_7240	PF12344	Ultra-violet resistance protein B	5
228399.appser1_11150	PF00312	Ribosomal protein S15	12
228399.Aple02002206	PF00156	Phosphoribosyl transferase domain	4
228399.appser1_2100	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	5
228399.Aple02000986	PF00707	Translation initiation factor IF-3, C-terminal domain	4
228399.Aple02000985	PF01632	Ribosomal protein L35	6
228399.Aple02000984	PF00453	Ribosomal protein L20	9
228399.Aple02000980	PF00849	RNA pseudouridylate synthase	5
228399.appser1_1030	PF00849	RNA pseudouridylate synthase	5
228399.appser1_12370	PF01755	Glycosyltransferase family 25 (LPS biosynthesis protein)	13
228399.Aple02000077	PF03253	Urea transporter	8
228399.appser1_6440	PF03989	DNA gyrase C-terminal domain, beta-propeller	5
228399.appser1_6440	PF00521	DNA gyrase/topoisomerase IV, subunit A	5
228399.appser1_18860	PF00276	Ribosomal protein L23	10
228399.Aple02000853	PF04488	Glycosyltransferase sugar-binding region containing DXD motif	5
228399.Aple02000693	PF04172	LrgB-like family	4
228399.Aple02000692	PF03788	LrgA family	5
228399.Aple02000691	PF00575	S1 RNA binding domain	5
228399.Aple02000691	PF00773	RNB domain	4
228399.appser1_14920	PF16327	Cytochrome c-type biogenesis protein CcmF C-terminal	6
228399.appser1_14920	PF01578	Cytochrome C assembly protein	6
228399.Aple02001397	PF13518	Helix-turn-helix domain	11
228399.appser1_18910	PF00252	Ribosomal protein L16p/L10e	12
228399.Aple02000322	PF12344	Ultra-violet resistance protein B	5
228399.Aple02000458	PF00152	tRNA synthetases class II (D, K and N)	6
228399.Aple02000458	PF01336	OB-fold nucleic acid binding domain	4
228399.Aple02000458	PF02938	GAD domain	4
228399.Aple02001104	PF01207	Dihydrouridine synthase (Dus)	5
228399.Aple02001617	PF01197	Ribosomal protein L31	5
228399.Aple02001612	PF03602	Conserved hypothetical protein 95	6
228399.appser1_21220	PF02677	Uncharacterized BCR, COG1636	5
228399.appser1_19880	PF04488	Glycosyltransferase sugar-binding region containing DXD motif	5
228399.Aple02001589	PF03819	MazG nucleotide pyrophosphohydrolase domain	5
228399.Aple02001039	PF04983	RNA polymerase Rpb1, domain 3	4
228399.Aple02001039	PF04997	RNA polymerase Rpb1, domain 1	6
228399.Aple02001039	PF05000	RNA polymerase Rpb1, domain 4	5
228399.Aple02001039	PF00623	RNA polymerase Rpb1, domain 2	5
228399.Aple02001039	PF04998	RNA polymerase Rpb1, domain 5	5
228399.Aple02000522	PF03595	Voltage-dependent anion channel	5
228399.appser1_5220	PF03595	Voltage-dependent anion channel	5
228399.appser1_5640	PF10548	P22AR C-terminal domain	15
228399.Aple02001327	PF01142	tRNA pseudouridine synthase D (TruD)	4
228399.appser1_18730	PF16582	Middle domain of thiamine pyrophosphate	4
228399.appser1_4390	PF00156	Phosphoribosyl transferase domain	4
228399.appser1_2300	PF08032	RNA 2'-O ribose methyltransferase substrate binding	4
228399.appser1_14980	PF00308	Bacterial dnaA  protein	5
228399.appser1_8030	PF00575	S1 RNA binding domain	5
228399.Aple02000641	PF03819	MazG nucleotide pyrophosphohydrolase domain	5
228399.Aple02000203	PF08264	Anticodon-binding domain of tRNA	6
228399.appser1_9340	PF01668	SmpB protein	7
228399.appser1_680	PF03144	Elongation factor Tu domain 2	5
228399.appser1_680	PF00009	Elongation factor Tu GTP binding domain	6
228399.appser1_19080	PF00163	Ribosomal protein S4/S9 N-terminal domain	4
228399.appser1_19080	PF01479	S4 domain	4
228399.appser1_8210	PF03788	LrgA family	5
228399.appser1_7470	PF09330	D-lactate dehydrogenase, membrane binding	5
228399.appser1_2130	PF01207	Dihydrouridine synthase (Dus)	5
228399.Aple02001200	PF06968	Biotin and Thiamin Synthesis associated domain	4
228399.appser1_2720	PF00696	Amino acid kinase family	6
228399.appser1_6670	PF00380	Ribosomal protein S9/S16	11
228399.Aple02001708	PF01755	Glycosyltransferase family 25 (LPS biosynthesis protein)	13
228399.Aple02000924	PF02527	rRNA small subunit methyltransferase G	5
228399.Aple02000990	PF02824	TGS domain	5
228399.appser1_2000	PF01743	Poly A polymerase head domain	5
228399.appser1_2000	PF12627	Probable RNA and SrmB- binding site of polymerase A	5
228399.Aple02001709	PF01755	Glycosyltransferase family 25 (LPS biosynthesis protein)	13
228399.appser1_6050	PF14622	Ribonuclease-III-like	4
228399.appser1_12380	PF00814	Glycoprotease family	6
228399.appser1_700	PF01138	3' exoribonuclease family, domain 1	4
228399.appser1_700	PF03725	3' exoribonuclease family, domain 2	4
228399.Aple02000194	PF02677	Uncharacterized BCR, COG1636	5
228399.appser1_13630	PF01026	TatD related DNase	5
228399.Aple02000205	PF00343	Carbohydrate phosphorylase	4
228399.Aple02000200	PF00849	RNA pseudouridylate synthase	5
228399.Aple02000200	PF01479	S4 domain	4
228399.appser1_18850	PF00573	Ribosomal protein L4/L1 family	8
228399.appser1_18920	PF00831	Ribosomal L29 protein	9
228399.Aple02000331	PF00152	tRNA synthetases class II (D, K and N)	6
228399.Aple02000331	PF01336	OB-fold nucleic acid binding domain	4
228399.Aple02000338	PF00156	Phosphoribosyl transferase domain	4
228399.Aple02001621	PF02824	TGS domain	5
228399.Aple02001621	PF13291	ACT domain	4
228399.Aple02001622	PF01192	RNA polymerase Rpb6	5
228399.appser1_8730	PF00575	S1 RNA binding domain	5
228399.appser1_8730	PF10150	Ribonuclease E/G family	6
228399.Aple02001553	PF00595	PDZ domain (Also known as DHR or GLGF)	6
228399.Aple02001005	PF08032	RNA 2'-O ribose methyltransferase substrate binding	4
228399.Aple02001009	PF01029	NusB family	5
228399.Aple02001008	PF02769	AIR synthase related protein, C-terminal domain	6
228399.Aple02001008	PF00586	AIR synthase related protein, N-terminal domain	4
228399.Aple02001953	PF07650	KH domain	9
228399.appser1_16460	PF00152	tRNA synthetases class II (D, K and N)	6
228399.appser1_4610	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	5
228399.appser1_15950	PF00773	RNB domain	4
228399.appser1_15950	PF00575	S1 RNA binding domain	5
228399.appser1_18700	PF13541	Subunit ChlI of Mg-chelatase	4
228399.appser1_8040	PF02224	Cytidylate kinase	4
228399.appser1_8860	PF00986	DNA gyrase B subunit, carboxyl terminus	5
228399.appser1_8860	PF00204	DNA gyrase B	5
228399.appser1_14700	PF02881	SRP54-type protein, helical bundle domain	6
228399.appser1_6970	PF02576	Putative ribosome maturation factor RimP	4
228399.Aple02000294	PF02033	Ribosome-binding factor A	6
228399.appser1_19090	PF01000	RNA polymerase Rpb3/RpoA insert domain	6
228399.appser1_19090	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain	6
228399.appser1_1690	PF01207	Dihydrouridine synthase (Dus)	5
228399.appser1_6020	PF03144	Elongation factor Tu domain 2	5
228399.appser1_6020	PF00009	Elongation factor Tu GTP binding domain	6
228399.appser1_6020	PF06421	GTP-binding protein LepA C-terminus	6
228399.Aple02000059	PF02410	Ribosomal silencing factor during starvation	6
228399.appser1_16760	PF01649	Ribosomal protein S20	8
228399.appser1_6330	PF00889	Elongation factor TS	7
228399.appser1_1470	PF00950	ABC 3 transport family	5
228399.Aple02001527	PF00152	tRNA synthetases class II (D, K and N)	6
228399.Aple02001527	PF01336	OB-fold nucleic acid binding domain	4
228399.appser1_18840	PF00297	Ribosomal protein L3	10
228399.Aple02000838	PF00849	RNA pseudouridylate synthase	5
228399.Aple02000838	PF01479	S4 domain	4
228399.Aple02000833	PF16187	Middle or third domain of peptidase_M16	5
228399.appser1_590	PF08264	Anticodon-binding domain of tRNA	6
228399.appser1_590	PF00133	tRNA synthetases class I (I, L, M and V)	4
228399.Aple02001831	PF00814	Glycoprotease family	6
228399.appser1_16070	PF05167	Uncharacterised ACR (DUF711)	6
228399.appser1_2650	PF00696	Amino acid kinase family	6
228399.appser1_12360	PF01755	Glycosyltransferase family 25 (LPS biosynthesis protein)	13
228399.Aple02000230	PF03462	PCRF domain	7
228399.Aple02000945	PF05495	CHY zinc finger	9
228399.Aple02000238	PF01717	Cobalamin-independent synthase, Catalytic domain	5
228399.Aple02001633	PF03590	Aspartate-ammonia ligase	6
228399.appser1_18620	PF03749	Sugar fermentation stimulation protein	6
228399.appser1_8720	PF00152	tRNA synthetases class II (D, K and N)	6
228399.appser1_8720	PF01336	OB-fold nucleic acid binding domain	4
228399.Aple02000540	PF01755	Glycosyltransferase family 25 (LPS biosynthesis protein)	13
228399.Aple02001547	PF02875	Mur ligase family, glutamate ligase domain	4
228399.Aple02001547	PF08245	Mur ligase middle domain	5
228399.Aple02001547	PF01225	Mur ligase family, catalytic domain	6
228399.Aple02001019	PF00209	Sodium:neurotransmitter symporter family	5
228399.Aple02001123	PF05496	Holliday junction DNA helicase ruvB N-terminus	5
228399.Aple02001124	PF00950	ABC 3 transport family	5
228399.Aple02001940	PF00156	Phosphoribosyl transferase domain	4
228399.appser1_9230	PF03222	Tryptophan/tyrosine permease family	7
228399.appser1_18430	PF16320	Ribosomal protein L7/L12 dimerisation domain	8
228399.appser1_20420	PF10571	Uncharacterised protein family UPF0547	13
228399.Aple02000623	PF04384	Iron-sulphur cluster assembly	4
228399.Aple02002120	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	5
228399.appser1_18380	PF00584	SecE/Sec61-gamma subunits of protein translocation complex	7
228399.appser1_11380	PF01755	Glycosyltransferase family 25 (LPS biosynthesis protein)	13
228399.appser1_19390	PF13177	DNA polymerase III, delta subunit	5
228399.Aple02002090	PF00595	PDZ domain (Also known as DHR or GLGF)	6
228399.appser1_19770	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain	4
228399.Aple02002148	PF00673	ribosomal L5P family C-terminus	11
228399.Aple02002148	PF00281	Ribosomal protein L5	11
228399.Aple02001000	PF13518	Helix-turn-helix domain	11
228399.Aple02002141	PF07650	KH domain	9
228399.Aple02002141	PF00189	Ribosomal protein S3, C-terminal domain	10
228399.Aple02002143	PF00831	Ribosomal L29 protein	9
228399.Aple02002142	PF00252	Ribosomal protein L16p/L10e	12
228399.Aple02002144	PF00366	Ribosomal protein S17	10
228399.Aple02002146	PF00238	Ribosomal protein L14p/L23e	11
228399.appser1_21800	PF13518	Helix-turn-helix domain	11
228399.Aple02000140	PF13541	Subunit ChlI of Mg-chelatase	4
228399.appser1_14710	PF03602	Conserved hypothetical protein 95	6
228399.appser1_6850	PF00814	Glycoprotease family	6
228399.appser1_7320	PF00152	tRNA synthetases class II (D, K and N)	6
228399.appser1_7320	PF01336	OB-fold nucleic acid binding domain	4
228399.appser1_6580	PF00958	GMP synthase C terminal domain	5
228399.Aple02000645	PF01715	IPP transferase	5
228399.appser1_12120	PF02769	AIR synthase related protein, C-terminal domain	6
228399.appser1_12120	PF00586	AIR synthase related protein, N-terminal domain	4
228399.Aple02000865	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain	4
228399.Aple02000909	PF05025	RbsD / FucU transport protein family	5
228399.appser1_6320	PF00318	Ribosomal protein S2	9
228399.appser1_13720	PF00939	Sodium:sulfate symporter transmembrane region	6
228399.appser1_2460	PF01632	Ribosomal protein L35	6
228399.Aple02001801	PF13710	ACT domain	5
228399.Aple02000285	PF08459	UvrC Helix-hairpin-helix N-terminal	5
228399.Aple02001797	PF01336	OB-fold nucleic acid binding domain	4
228399.Aple02000315	PF00710	Asparaginase, N-terminal	4
228399.Aple02000957	PF01138	3' exoribonuclease family, domain 1	4
228399.Aple02000957	PF03725	3' exoribonuclease family, domain 2	4
228399.Aple02000957	PF00575	S1 RNA binding domain	5
228399.Aple02000957	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain	4
228399.Aple02000228	PF02769	AIR synthase related protein, C-terminal domain	6
228399.Aple02000228	PF00586	AIR synthase related protein, N-terminal domain	4
228399.Aple02001577	PF00575	S1 RNA binding domain	5
228399.appser1_9480	PF13541	Subunit ChlI of Mg-chelatase	4
228399.Aple02001113	PF10063	Uncharacterized integral membrane protein (DUF2301)	11
228399.Aple02001156	PF00950	ABC 3 transport family	5
228399.Aple02001155	PF00950	ABC 3 transport family	5
228399.appser1_160	PF00308	Bacterial dnaA  protein	5
228399.appser1_18890	PF00237	Ribosomal protein L22p/L17e	9
228399.Aple02001977	PF00575	S1 RNA binding domain	5
228399.Aple02001977	PF10150	Ribonuclease E/G family	6
228399.Aple02000589	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	5
228399.appser1_18420	PF00466	Ribosomal protein L10	8
228399.Aple02001206	PF03144	Elongation factor Tu domain 2	5
228399.Aple02001206	PF00009	Elongation factor Tu GTP binding domain	6
228399.Aple02001206	PF06421	GTP-binding protein LepA C-terminus	6
228399.Aple02001208	PF14622	Ribonuclease-III-like	4
228399.appser1_5940	PF05690	Thiazole biosynthesis protein ThiG	5
228399.appser1_17750	PF02527	rRNA small subunit methyltransferase G	5
228399.appser1_7990	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family	5
228399.appser1_19140	PF01245	Ribosomal protein L19	9
228399.Aple02002086	PF01026	TatD related DNase	5
228399.Aple02002153	PF03749	Sugar fermentation stimulation protein	6
228399.Aple02002151	PF10576	Iron-sulfur binding domain of endonuclease III	5
228399.appser1_7190	PF00710	Asparaginase, N-terminal	4
228399.appser1_10970	PF13518	Helix-turn-helix domain	11
228399.appser1_11020	PF00268	Ribonucleotide reductase, small chain	5
228399.appser1_6620	PF03222	Tryptophan/tyrosine permease family	7
228399.appser1_11620	PF03918	Cytochrome C biogenesis protein	6
228399.appser1_1580	PF10063	Uncharacterized integral membrane protein (DUF2301)	11
228399.appser1_6550	PF05495	CHY zinc finger	9
228399.appser1_16270	PF00009	Elongation factor Tu GTP binding domain	6
228399.appser1_13530	PF00343	Carbohydrate phosphorylase	4
228399.appser1_15290	PF02875	Mur ligase family, glutamate ligase domain	4
228399.appser1_15290	PF08245	Mur ligase middle domain	5
228399.appser1_15290	PF01225	Mur ligase family, catalytic domain	6
228399.Aple02001350	PF00584	SecE/Sec61-gamma subunits of protein translocation complex	7
228399.appser1_12220	PF01336	OB-fold nucleic acid binding domain	4
228399.Aple02000143	PF00696	Amino acid kinase family	6
228399.Aple02000145	PF10576	Iron-sulfur binding domain of endonuclease III	5
228399.appser1_2880	PF00156	Phosphoribosyl transferase domain	4
228399.appser1_2470	PF00453	Ribosomal protein L20	9
228399.appser1_570	PF08032	RNA 2'-O ribose methyltransferase substrate binding	4
228399.Aple02001787	PF02769	AIR synthase related protein, C-terminal domain	6
228399.Aple02001787	PF00586	AIR synthase related protein, N-terminal domain	4
228399.appser1_18950	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24	8
228399.Aple02000498	PF00165	Bacterial regulatory helix-turn-helix proteins, AraC family	6
228399.Aple02000965	PF00696	Amino acid kinase family	6
228399.Aple02000964	PF01765	Ribosome recycling factor	9
228399.Aple02000967	PF00889	Elongation factor TS	7
228399.Aple02000780	PF03602	Conserved hypothetical protein 95	6
228399.Aple02000968	PF00318	Ribosomal protein S2	9
228399.appser1_480	PF01195	Peptidyl-tRNA hydrolase	6
228399.Aple02001902	PF02620	Uncharacterized ACR, COG1399	4
228399.Aple02000761	PF02769	AIR synthase related protein, C-terminal domain	6
228399.Aple02000761	PF00586	AIR synthase related protein, N-terminal domain	4
228399.Aple02001145	PF06968	Biotin and Thiamin Synthesis associated domain	4
228399.Aple02001141	PF00303	Thymidylate synthase	5
228399.Aple02001142	PF00303	Thymidylate synthase	5
228399.Aple02001148	PF00595	PDZ domain (Also known as DHR or GLGF)	6
228399.appser1_18880	PF00203	Ribosomal protein S19	8
228399.Aple02001365	PF00575	S1 RNA binding domain	5
228399.Aple02001365	PF10150	Ribonuclease E/G family	6
228399.Aple02001367	PF13518	Helix-turn-helix domain	11
228399.Aple02001213	PF13177	DNA polymerase III, delta subunit	5
228399.Aple02001216	PF01026	TatD related DNase	5
228399.appser1_18410	PF00687	Ribosomal protein L1p/L10e family	10
228399.appser1_5950	PF06968	Biotin and Thiamin Synthesis associated domain	4
228399.appser1_4420	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal	6
228399.appser1_10360	PF04384	Iron-sulphur cluster assembly	4
228399.appser1_14410	PF00696	Amino acid kinase family	6
228399.Aple02001777	PF16582	Middle domain of thiamine pyrophosphate	4
228399.Aple02001239	PF01782	RimM N-terminal domain	5
228399.appser1_19280	PF05746	DALR anticodon binding domain	4
228399.appser1_15600	PF00575	S1 RNA binding domain	5
228399.appser1_15600	PF10150	Ribonuclease E/G family	6
228399.appser1_2260	PF01029	NusB family	5
228399.appser1_19350	PF01026	TatD related DNase	5
228399.appser1_18180	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family	5
228399.appser1_6940	PF03819	MazG nucleotide pyrophosphohydrolase domain	5
228399.Aple02001785	PF02881	SRP54-type protein, helical bundle domain	6
228399.Aple02001785	PF02978	Signal peptide binding domain	6
228399.Aple02000244	PF00849	RNA pseudouridylate synthase	5
228399.Aple02001780	PF13541	Subunit ChlI of Mg-chelatase	4
228399.appser1_1400	PF00595	PDZ domain (Also known as DHR or GLGF)	6
228399.Aple02000020	PF00009	Elongation factor Tu GTP binding domain	6
228399.Aple02000805	PF01578	Cytochrome C assembly protein	6
228399.Aple02000802	PF16327	Cytochrome c-type biogenesis protein CcmF C-terminal	6
228399.Aple02000802	PF01578	Cytochrome C assembly protein	6
228399.Aple02000808	PF00308	Bacterial dnaA  protein	5
228399.Aple02000376	PF05746	DALR anticodon binding domain	4
228399.Aple02000370	PF01687	Riboflavin kinase	4
228399.Aple02000371	PF08264	Anticodon-binding domain of tRNA	6
228399.Aple02000371	PF00133	tRNA synthetases class I (I, L, M and V)	4
228399.Aple02000373	PF08032	RNA 2'-O ribose methyltransferase substrate binding	4
228399.Aple02000978	PF03652	Holliday junction resolvase	4
228399.Aple02000973	PF05872	Bacterial protein of unknown function (DUF853)	5
228399.appser1_490	PF06071	Protein of unknown function (DUF933)	6
228399.Aple02000776	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region	6
228399.Aple02000779	PF02881	SRP54-type protein, helical bundle domain	6
228399.Aple02000784	PF03848	Tellurite resistance protein TehB	6
228399.Aple02000575	PF00268	Ribonucleotide reductase, small chain	5
228399.appser1_21720	PF00009	Elongation factor Tu GTP binding domain	6
228399.Aple02001510	PF00939	Sodium:sulfate symporter transmembrane region	6
228399.Aple02000482	PF02844	Phosphoribosylglycinamide synthetase, N domain	4
228399.Aple02000482	PF02843	Phosphoribosylglycinamide synthetase, C domain	4
228399.Aple02000482	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain	10
228399.appser1_380	PF00091	Tubulin/FtsZ family, GTPase domain	5
228399.appser1_380	PF12327	FtsZ family, C-terminal domain	6
228399.Aple02000481	PF01250	Ribosomal protein S6	9
228399.appser1_140	PF03462	PCRF domain	7
228399.Aple02001992	PF13710	ACT domain	5
228399.Aple02001196	PF00899	ThiF family	4
228399.Aple02001195	PF00899	ThiF family	4
228399.Aple02001199	PF05690	Thiazole biosynthesis protein ThiG	5
228399.Aple02001198	PF05690	Thiazole biosynthesis protein ThiG	5
228399.appser1_18980	PF00410	Ribosomal protein S8	11
228399.Aple02001353	PF00687	Ribosomal protein L1p/L10e family	10
228399.Aple02001352	PF03946	Ribosomal protein L11, N-terminal domain	8
228399.Aple02001352	PF00298	Ribosomal protein L11, RNA binding domain	8
228399.Aple02001354	PF00466	Ribosomal protein L10	8
228399.appser1_19600	PF03590	Aspartate-ammonia ligase	6
228399.Aple02001223	PF05746	DALR anticodon binding domain	4
228399.appser1_18400	PF03946	Ribosomal protein L11, N-terminal domain	8
228399.appser1_18400	PF00298	Ribosomal protein L11, RNA binding domain	8
228399.appser1_15930	PF01479	S4 domain	4
228399.appser1_3010	PF01026	TatD related DNase	5
228399.appser1_3300	PF01207	Dihydrouridine synthase (Dus)	5
228399.appser1_8420	PF04172	LrgB-like family	4
228399.Aple02000562	PF00312	Ribosomal protein S15	12
228399.appser1_14670	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region	6
228399.Aple02002190	PF00764	Arginosuccinate synthase	6
228399.Aple02002194	PF00156	Phosphoribosyl transferase domain	4
228399.appser1_7040	PF13500	AAA domain	6
228399.appser1_2870	PF13177	DNA polymerase III, delta subunit	5
228399.appser1_10520	PF13500	AAA domain	6
228399.appser1_2270	PF02769	AIR synthase related protein, C-terminal domain	6
228399.appser1_2270	PF00586	AIR synthase related protein, N-terminal domain	4
228399.appser1_12730	PF01717	Cobalamin-independent synthase, Catalytic domain	5
228399.appser1_11640	PF16327	Cytochrome c-type biogenesis protein CcmF C-terminal	6
228399.appser1_11640	PF01578	Cytochrome C assembly protein	6
228399.appser1_7550	PF02130	Uncharacterized protein family UPF0054	20
228399.appser1_7000	PF02033	Ribosome-binding factor A	6
228399.appser1_15320	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain	10
228399.Aple02000019	PF01029	NusB family	5
228399.Aple02000017	PF01649	Ribosomal protein S20	8
228399.appser1_2450	PF00707	Translation initiation factor IF-3, C-terminal domain	4
228399.appser1_550	PF01018	GTP1/OBG	5
228399.appser1_21280	PF01016	Ribosomal L27 protein	7
228399.Aple02001763	PF13518	Helix-turn-helix domain	11
228399.Aple02001764	PF13500	AAA domain	6
228399.appser1_340	PF02875	Mur ligase family, glutamate ligase domain	4
228399.appser1_340	PF08245	Mur ligase middle domain	5
228399.appser1_340	PF01225	Mur ligase family, catalytic domain	6
228399.Aple02000743	PF01479	S4 domain	4
228399.Aple02001690	PF02367	Threonylcarbamoyl adenosine biosynthesis protein TsaE	12
228399.Aple02000588	PF01197	Ribosomal protein L31	5
228399.Aple02001508	PF00939	Sodium:sulfate symporter transmembrane region	6
228399.Aple02000581	PF13518	Helix-turn-helix domain	11
228399.Aple02001507	PF00162	Phosphoglycerate kinase	5
228399.Aple02000586	PF13518	Helix-turn-helix domain	11
228399.Aple02000344	PF09330	D-lactate dehydrogenase, membrane binding	5
228399.appser1_16580	PF01171	PP-loop family	4
228399.appser1_20880	PF01715	IPP transferase	5
228399.Aple02001985	PF05958	tRNA (Uracil-5-)-methyltransferase	8
228399.Aple02001430	PF16327	Cytochrome c-type biogenesis protein CcmF C-terminal	6
228399.Aple02001430	PF01578	Cytochrome C assembly protein	6
228399.Aple02001432	PF03918	Cytochrome C biogenesis protein	6
228399.appser1_20030	PF00849	RNA pseudouridylate synthase	5
228399.appser1_20030	PF01479	S4 domain	4
228399.appser1_18990	PF00347	Ribosomal protein L6	11
228399.appser1_20080	PF16187	Middle or third domain of peptidase_M16	5
228399.Aple02001238	PF01746	tRNA (Guanine-1)-methyltransferase	6
228399.appser1_11900	PF05872	Bacterial protein of unknown function (DUF853)	5
228399.Aple02001237	PF01245	Ribosomal protein L19	9
228399.Aple02002119	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	5
228399.Aple02001446	PF03918	Cytochrome C biogenesis protein	6
228399.appser1_19110	PF00886	Ribosomal protein S16	7
228399.appser1_8430	PF03788	LrgA family	5
228399.appser1_19020	PF00327	Ribosomal protein L30p/L7e	4
228399.appser1_2990	PF08459	UvrC Helix-hairpin-helix N-terminal	5
228399.Aple02002058	PF03222	Tryptophan/tyrosine permease family	7
228399.appser1_12900	PF01250	Ribosomal protein S6	9
228399.appser1_6780	PF13500	AAA domain	6
228399.appser1_14530	PF02769	AIR synthase related protein, C-terminal domain	6
228399.appser1_14530	PF00586	AIR synthase related protein, N-terminal domain	4
228399.appser1_15130	PF01578	Cytochrome C assembly protein	6
228399.appser1_2510	PF00849	RNA pseudouridylate synthase	5
228399.appser1_7560	PF13718	GNAT acetyltransferase 2	12
228399.appser1_7560	PF05127	Helicase	6
228399.appser1_600	PF01687	Riboflavin kinase	4
228399.appser1_6960	PF08245	Mur ligase middle domain	5
228399.appser1_3860	PF08264	Anticodon-binding domain of tRNA	6
228399.appser1_540	PF05746	DALR anticodon binding domain	4
228399.appser1_6360	PF01765	Ribosome recycling factor	9
228399.appser1_12300	PF05958	tRNA (Uracil-5-)-methyltransferase	8
228399.appser1_18830	PF00338	Ribosomal protein S10p/S20e	10
228399.Aple02001759	PF03484	tRNA synthetase B5 domain	6
228399.Aple02001759	PF03147	Ferredoxin-fold anticodon binding domain	4
228399.Aple02001758	PF01409	tRNA synthetases class II core domain (F)	5
228399.Aple02001758	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain	6
228399.Aple02001751	PF00380	Ribosomal protein S9/S16	11
228399.Aple02000174	PF01743	Poly A polymerase head domain	5
228399.Aple02000174	PF12627	Probable RNA and SrmB- binding site of polymerase A	5
228399.Aple02000175	PF13518	Helix-turn-helix domain	11
228399.Aple02000914	PF13518	Helix-turn-helix domain	11
228399.appser1_18930	PF00366	Ribosomal protein S17	10
228399.Aple02000590	PF01755	Glycosyltransferase family 25 (LPS biosynthesis protein)	13
228399.Aple02000591	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	5
228399.Aple02000356	PF00696	Amino acid kinase family	6
228399.Aple02000352	PF02130	Uncharacterized protein family UPF0054	20
228399.Aple02000353	PF13718	GNAT acetyltransferase 2	12
228399.Aple02000353	PF05127	Helicase	6
228399.appser1_1350	PF00303	Thymidylate synthase	5
228399.Aple02000942	PF00958	GMP synthase C terminal domain	5
228399.Aple02000748	PF00696	Amino acid kinase family	6
228399.Aple02001404	PF05697	Bacterial trigger factor protein (TF)	6
228399.appser1_21700	PF00177	Ribosomal protein S7p/S5e	10
228399.Aple02001886	PF00156	Phosphoribosyl transferase domain	4
228399.Aple02001249	PF00327	Ribosomal protein L30p/L7e	4
228399.Aple02001248	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	10
228399.Aple02001247	PF00344	SecY translocase	5
228399.Aple02001245	PF00416	Ribosomal protein S13/S18	10
228399.Aple02001244	PF00411	Ribosomal protein S11	11
228399.Aple02001243	PF00163	Ribosomal protein S4/S9 N-terminal domain	4
228399.Aple02001243	PF01479	S4 domain	4
228399.Aple02001242	PF01000	RNA polymerase Rpb3/RpoA insert domain	6
228399.Aple02001242	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain	6
228399.Aple02001241	PF01196	Ribosomal protein L17	8
228399.Aple02001240	PF00886	Ribosomal protein S16	7
228399.appser1_17400	PF03253	Urea transporter	8
228399.appser1_8220	PF04172	LrgB-like family	4
228399.appser1_18510	PF10385	RNA polymerase beta subunit external 1 domain	5
228399.appser1_18510	PF04563	RNA polymerase beta subunit	5
228399.appser1_18510	PF04560	RNA polymerase Rpb2, domain 7	5
228399.appser1_18510	PF04561	RNA polymerase Rpb2, domain 2	5
228399.appser1_18510	PF00562	RNA polymerase Rpb2, domain 6	5
228399.appser1_18510	PF04565	RNA polymerase Rpb2, domain 3	5
228399.appser1_19100	PF01196	Ribosomal protein L17	8
228399.appser1_4450	PF13291	ACT domain	4
228399.appser1_4450	PF02824	TGS domain	5
228399.appser1_19030	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	10
228399.appser1_3070	PF05496	Holliday junction DNA helicase ruvB N-terminus	5
228399.appser1_3070	PF05491	Holliday junction DNA helicase ruvB C-terminus	6
228399.Aple02002041	PF00849	RNA pseudouridylate synthase	5
228399.Aple02001426	PF13518	Helix-turn-helix domain	11
228399.Aple02002288	PF00950	ABC 3 transport family	5
228399.appser1_3580	PF00091	Tubulin/FtsZ family, GTPase domain	5
228399.Aple02002285	PF02367	Threonylcarbamoyl adenosine biosynthesis protein TsaE	12
228399.appser1_12870	PF01281	Ribosomal protein L9, N-terminal domain	8
228399.appser1_12870	PF03948	Ribosomal protein L9, C-terminal domain	8
228399.appser1_15120	PF02620	Uncharacterized ACR, COG1399	4
228399.appser1_6990	PF11987	Translation-initiation factor 2	5
228399.appser1_6990	PF00009	Elongation factor Tu GTP binding domain	6
228399.appser1_6350	PF00696	Amino acid kinase family	6
228399.appser1_16160	PF08264	Anticodon-binding domain of tRNA	6
228399.appser1_16160	PF00133	tRNA synthetases class I (I, L, M and V)	4
228399.appser1_280	PF02875	Mur ligase family, glutamate ligase domain	4
228399.appser1_280	PF08245	Mur ligase middle domain	5
228399.appser1_280	PF01225	Mur ligase family, catalytic domain	6
228399.appser1_13710	PF00162	Phosphoglycerate kinase	5
228399.Aple02000295	PF01509	TruB family pseudouridylate synthase (N terminal domain)	6
228399.Aple02000293	PF11987	Translation-initiation factor 2	5
228399.Aple02000293	PF00009	Elongation factor Tu GTP binding domain	6
228399.Aple02000292	PF13184	NusA-like KH domain	5
228399.Aple02000291	PF02576	Putative ribosome maturation factor RimP	4
228399.Aple02000298	PF13500	AAA domain	6
228399.Aple02000720	PF03788	LrgA family	5
228399.appser1_9510	PF00696	Amino acid kinase family	6
228399.Aple02000437	PF06250	Protein of unknown function (DUF1016)	8
228399.appser1_16780	PF01029	NusB family	5
228399.Aple02001410	PF03144	Elongation factor Tu domain 2	5
228399.Aple02001410	PF00009	Elongation factor Tu GTP binding domain	6
228399.Aple02001411	PF00177	Ribosomal protein S7p/S5e	10
228399.appser1_21710	PF03144	Elongation factor Tu domain 2	5
228399.appser1_21710	PF00009	Elongation factor Tu GTP binding domain	6
228399.Aple02001250	PF00333	Ribosomal protein S5, N-terminal domain	11
228399.Aple02001250	PF03719	Ribosomal protein S5, C-terminal domain	11
228399.Aple02001251	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast	11
228399.Aple02001252	PF00347	Ribosomal protein L6	11
228399.Aple02001253	PF00410	Ribosomal protein S8	11
228399.appser1_10320	PF01743	Poly A polymerase head domain	5
228399.appser1_10320	PF12627	Probable RNA and SrmB- binding site of polymerase A	5
228399.Aple02002137	PF00276	Ribosomal protein L23	10
228399.appser1_19130	PF01746	tRNA (Guanine-1)-methyltransferase	6
228399.appser1_19000	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast	11
228399.Aple02002075	PF00343	Carbohydrate phosphorylase	4
228399.appser1_7010	PF01509	TruB family pseudouridylate synthase (N terminal domain)	6
228399.appser1_12670	PF00152	tRNA synthetases class II (D, K and N)	6
228399.appser1_12670	PF01336	OB-fold nucleic acid binding domain	4
228399.appser1_12670	PF02938	GAD domain	4
228399.appser1_14310	PF06250	Protein of unknown function (DUF1016)	8
228399.appser1_15150	PF00209	Sodium:neurotransmitter symporter family	5
228399.appser1_3840	PF00343	Carbohydrate phosphorylase	4
228399.appser1_12780	PF00849	RNA pseudouridylate synthase	5
228399.appser1_12780	PF01479	S4 domain	4
228399.appser1_2530	PF03652	Holliday junction resolvase	4
228399.appser1_6980	PF13184	NusA-like KH domain	5
228399.appser1_2150	PF00209	Sodium:neurotransmitter symporter family	5
228399.appser1_6430	PF01138	3' exoribonuclease family, domain 1	4
228399.appser1_6430	PF03725	3' exoribonuclease family, domain 2	4
228399.appser1_6430	PF00575	S1 RNA binding domain	5
228399.appser1_6430	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain	4
228399.appser1_1570	PF06418	CTP synthase N-terminus	6
228399.appser1_290	PF02875	Mur ligase family, glutamate ligase domain	4
228399.appser1_290	PF08245	Mur ligase middle domain	5
228399.appser1_290	PF01225	Mur ligase family, catalytic domain	6
228399.Aple02000608	PF13500	AAA domain	6
228399.Aple02000602	PF03449	Transcription elongation factor, N-terminal	5
228399.Aple02000110	PF01717	Cobalamin-independent synthase, Catalytic domain	5
228399.Aple02000113	PF03222	Tryptophan/tyrosine permease family	7
228399.Aple02000284	PF01026	TatD related DNase	5
228399.appser1_19490	PF01192	RNA polymerase Rpb6	5
228399.appser1_450	PF03144	Elongation factor Tu domain 2	5
228399.appser1_450	PF00009	Elongation factor Tu GTP binding domain	6
228399.appser1_1370	PF06968	Biotin and Thiamin Synthesis associated domain	4
228399.appser1_13120	PF04664	Opioid growth factor receptor (OGFr) conserved region	7
228399.appser1_6630	PF03222	Tryptophan/tyrosine permease family	7
228399.Aple02001647	PF00696	Amino acid kinase family	6
228399.Aple02001644	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	5
228399.Aple02001737	PF00986	DNA gyrase B subunit, carboxyl terminus	5
228399.Aple02001737	PF00204	DNA gyrase B	5
228399.Aple02001887	PF13177	DNA polymerase III, delta subunit	5
228399.Aple02001399	PF08264	Anticodon-binding domain of tRNA	6
228399.Aple02001399	PF00133	tRNA synthetases class I (I, L, M and V)	4
228399.appser1_16790	PF03144	Elongation factor Tu domain 2	5
228399.appser1_16790	PF00009	Elongation factor Tu GTP binding domain	6
228399.Aple02001462	PF00152	tRNA synthetases class II (D, K and N)	6
228399.appser1_21270	PF00829	Ribosomal prokaryotic L21 protein	6
228399.appser1_14950	PF01578	Cytochrome C assembly protein	6
228399.appser1_9530	PF10576	Iron-sulfur binding domain of endonuclease III	5
228399.Aple02001066	PF01479	S4 domain	4
228399.Aple02001068	PF00773	RNB domain	4
228399.Aple02001068	PF00575	S1 RNA binding domain	5
228399.Aple02001260	PF13291	ACT domain	4
228399.Aple02001260	PF02824	TGS domain	5
228399.Aple02001262	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal	6
228399.Aple02001264	PF00156	Phosphoribosyl transferase domain	4
228399.Aple02001103	PF00268	Ribonucleotide reductase, small chain	5
228399.appser1_8200	PF00575	S1 RNA binding domain	5
228399.appser1_8200	PF00773	RNB domain	4
228399.appser1_18530	PF00623	RNA polymerase Rpb1, domain 2	5
228399.appser1_18530	PF04998	RNA polymerase Rpb1, domain 5	5
228399.appser1_18530	PF04997	RNA polymerase Rpb1, domain 1	6
228399.appser1_18530	PF04983	RNA polymerase Rpb1, domain 3	4
228399.appser1_18530	PF05000	RNA polymerase Rpb1, domain 4	5
228399.appser1_19120	PF01782	RimM N-terminal domain	5