321327.CYA_2798	PF13326	Photosystem II Pbs27	6
321327.CYA_2577	PF11460	Protein of unknown function (DUF3007)	6
321327.CYA_2573	PF12323	Helix-turn-helix domain	13
321327.CYA_2573	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2572	PF00239	Resolvase, N terminal domain	6
321327.CYA_2578	PF10716	NADH dehydrogenase transmembrane subunit	7
321327.CYA_1716	PF11317	Protein of unknown function (DUF3119)	6
321327.CYA_1959	PF12323	Helix-turn-helix domain	13
321327.CYA_1959	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_1956	PF12323	Helix-turn-helix domain	13
321327.CYA_1956	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0536	PF02531	PsaD	6
321327.CYA_1001	PF11016	Protein of unknown function (DUF2854)	6
321327.CYA_1028	PF11909	NADH-quinone oxidoreductase cyanobacterial subunit N	6
321327.CYA_1849	PF00124	Photosynthetic reaction centre protein	8
321327.CYA_1485	PF02392	Ycf4	6
321327.CYA_1487	PF11378	Protein of unknown function (DUF3181)	6
321327.CYA_0444	PF01457	Leishmanolysin	7
321327.CYA_0226	PF12323	Helix-turn-helix domain	13
321327.CYA_0226	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_1133	PF11341	Protein of unknown function (DUF3143)	6
321327.CYA_1136	PF12323	Helix-turn-helix domain	13
321327.CYA_1136	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_1325	PF02468	Photosystem II reaction centre N protein (psbN)	6
321327.CYA_2560	PF03040	CemA family	4
321327.CYA_2568	PF06206	CpeT/CpcT family (DUF1001)	9
321327.CYA_2685	PF12323	Helix-turn-helix domain	13
321327.CYA_2685	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_1927	PF11282	Protein of unknown function (DUF3082)	6
321327.CYA_1850	PF05491	Holliday junction DNA helicase ruvB C-terminus	6
321327.CYA_1585	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_1037	PF16166	Chloroplast import apparatus Tic20-like	6
321327.CYA_2034	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2036	PF12046	Protein of unknown function (DUF3529)	6
321327.CYA_2581	PF12323	Helix-turn-helix domain	13
321327.CYA_2581	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0293	PF02605	Photosystem I reaction centre subunit XI	13
321327.CYA_0294	PF01701	Photosystem I reaction centre subunit IX / PsaJ	6
321327.CYA_0295	PF02507	Photosystem I reaction centre subunit III	6
321327.CYA_1457	PF02366	Dolichyl-phosphate-mannose-protein mannosyltransferase	4
321327.CYA_2636	PF12323	Helix-turn-helix domain	13
321327.CYA_2636	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0858	PF04481	Protein of unknown function (DUF561)	6
321327.CYA_0678	PF01169	Uncharacterized protein family UPF0016	6
321327.CYA_2357	PF08041	PetM family of cytochrome b6f complex subunit 7	6
321327.CYA_2359	PF00421	Photosystem II protein	5
321327.CYA_2358	PF00124	Photosynthetic reaction centre protein	8
321327.CYA_1938	PF12323	Helix-turn-helix domain	13
321327.CYA_1938	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_1939	PF11152	Protein of unknown function (DUF2930)	6
321327.CYA_1933	PF02533	Photosystem II 4 kDa reaction centre component	7
321327.CYA_1937	PF00239	Resolvase, N terminal domain	6
321327.CYA_1029	PF12617	Iron-Sulfur binding protein C terminal	6
321327.CYA_2001	PF12323	Helix-turn-helix domain	13
321327.CYA_2001	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2002	PF00239	Resolvase, N terminal domain	6
321327.CYA_1118	PF08695	Cytochrome oxidase complex assembly protein 1	5
321327.CYA_2642	PF03092	BT1 family	5
321327.CYA_2647	PF00124	Photosynthetic reaction centre protein	8
321327.CYA_0645	PF01405	Photosystem II reaction centre T protein	8
321327.CYA_0644	PF00421	Photosystem II protein	5
321327.CYA_0642	PF05151	Photosystem II reaction centre M protein (PsbM)	8
321327.CYA_0887	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2750	PF02941	Ferredoxin thioredoxin reductase variable alpha chain	7
321327.CYA_2343	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2834	PF00504	Chlorophyll A-B binding protein	6
321327.CYA_0507	PF13301	Protein of unknown function (DUF4079)	6
321327.CYA_2012	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2010	PF13518	Helix-turn-helix domain	8
321327.CYA_1977	PF12323	Helix-turn-helix domain	13
321327.CYA_1977	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_1471	PF12323	Helix-turn-helix domain	13
321327.CYA_1471	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_1472	PF00239	Resolvase, N terminal domain	6
321327.CYA_1870	PF12204	Domain of unknown function (DUF3598)	4
321327.CYA_2557	PF02943	Ferredoxin thioredoxin reductase catalytic beta chain	9
321327.CYA_0654	PF14249	Tocopherol cyclase	9
321327.CYA_0896	PF14249	Tocopherol cyclase	9
321327.CYA_1274	PF00124	Photosynthetic reaction centre protein	8
321327.CYA_1279	PF13518	Helix-turn-helix domain	8
321327.CYA_0096	PF10674	Protein of unknown function (DUF2488)	6
321327.CYA_0090	PF01737	YCF9	6
321327.CYA_0091	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0259	PF06298	Photosystem II protein Y (PsbY)	6
321327.CYA_0661	PF06206	CpeT/CpcT family (DUF1001)	9
321327.CYA_2331	PF01744	GLTT repeat (6 copies)	5
321327.CYA_2482	PF12049	Protein of unknown function (DUF3531)	6
321327.CYA_2245	PF10184	Uncharacterized conserved protein (DUF2358)	5
321327.CYA_2241	PF08847	Domain of unknown function (DUF1817)	7
321327.CYA_2249	PF12323	Helix-turn-helix domain	13
321327.CYA_2249	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2070	PF11210	Protein of unknown function (DUF2996)	6
321327.CYA_2063	PF12323	Helix-turn-helix domain	13
321327.CYA_2063	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2795	PF04278	Tic22-like family	6
321327.CYA_2069	PF10664	Cyanobacterial and plastid NDH-1 subunit M	6
321327.CYA_2664	PF02529	Cytochrome B6-F complex subunit 5	8
321327.CYA_1862	PF01765	Ribosome recycling factor	9
321327.CYA_1311	PF13518	Helix-turn-helix domain	8
321327.CYA_2250	PF00239	Resolvase, N terminal domain	6
321327.CYA_2787	PF11947	Protein of unknown function (DUF3464)	6
321327.CYA_0410	PF04983	RNA polymerase Rpb1, domain 3	4
321327.CYA_0411	PF04983	RNA polymerase Rpb1, domain 3	4
321327.CYA_1891	PF00239	Resolvase, N terminal domain	6
321327.CYA_1890	PF12323	Helix-turn-helix domain	13
321327.CYA_1890	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0231	PF12527	Protein of unknown function (DUF3727)	6
321327.CYA_0142	PF00504	Chlorophyll A-B binding protein	6
321327.CYA_0121	PF12159	Protein of unknown function (DUF3593)	6
321327.CYA_0122	PF10693	Protein of unknown function (DUF2499)	6
321327.CYA_2044	PF06206	CpeT/CpcT family (DUF1001)	9
321327.CYA_1660	PF05277	Protein of unknown function (DUF726)	7
321327.CYA_0427	PF00101	Ribulose bisphosphate carboxylase, small chain	6
321327.CYA_1402	PF11267	Domain of unknown function (DUF3067)	6
321327.CYA_2684	PF00239	Resolvase, N terminal domain	6
321327.CYA_1404	PF16639	Apocytochrome F, N-terminal	6
321327.CYA_1404	PF01333	Apocytochrome F, C-terminal	6
321327.CYA_2682	PF05757	Oxygen evolving enhancer protein 3 (PsbQ)	16
321327.CYA_2449	PF03647	Transmembrane proteins 14C	8
321327.CYA_0687	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0331	PF04839	Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)	6
321327.CYA_1080	PF02366	Dolichyl-phosphate-mannose-protein mannosyltransferase	4
321327.CYA_0205	PF00504	Chlorophyll A-B binding protein	6
321327.CYA_0204	PF02427	Photosystem I reaction centre subunit IV / PsaE	6
321327.CYA_0113	PF03130	PBS lyase HEAT-like repeat	7
321327.CYA_1689	PF02366	Dolichyl-phosphate-mannose-protein mannosyltransferase	4
321327.CYA_1439	PF00239	Resolvase, N terminal domain	6
321327.CYA_1438	PF12323	Helix-turn-helix domain	13
321327.CYA_1438	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2694	PF00239	Resolvase, N terminal domain	6
321327.CYA_2695	PF12323	Helix-turn-helix domain	13
321327.CYA_2695	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0217	PF03130	PBS lyase HEAT-like repeat	7
321327.CYA_1341	PF12095	Protein of unknown function (DUF3571)	6
321327.CYA_0694	PF13301	Protein of unknown function (DUF4079)	6
321327.CYA_0695	PF11347	Protein of unknown function (DUF3148)	12
321327.CYA_0690	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2845	PF13518	Helix-turn-helix domain	8
321327.CYA_1646	PF12323	Helix-turn-helix domain	13
321327.CYA_1646	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_1645	PF00239	Resolvase, N terminal domain	6
321327.CYA_1642	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2423	PF01169	Uncharacterized protein family UPF0016	6
321327.CYA_2427	PF01788	PsbJ	7
321327.CYA_2425	PF00239	Resolvase, N terminal domain	6
321327.CYA_2424	PF12323	Helix-turn-helix domain	13
321327.CYA_2424	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2429	PF00283	Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits	6
321327.CYA_2428	PF02419	PsbL protein	11
321327.CYA_0595	PF00239	Resolvase, N terminal domain	6
321327.CYA_0596	PF12323	Helix-turn-helix domain	13
321327.CYA_0596	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0620	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2040	PF03130	PBS lyase HEAT-like repeat	7
321327.CYA_0777	PF12323	Helix-turn-helix domain	13
321327.CYA_0777	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_1355	PF11347	Protein of unknown function (DUF3148)	12
321327.CYA_1359	PF12323	Helix-turn-helix domain	13
321327.CYA_1181	PF12323	Helix-turn-helix domain	13
321327.CYA_1181	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0981	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_1744	PF05421	Protein of unknown function (DUF751)	6
321327.CYA_1748	PF00124	Photosynthetic reaction centre protein	8
321327.CYA_2430	PF00284	Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit	6
321327.CYA_2430	PF00283	Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits	6
321327.CYA_2439	PF00239	Resolvase, N terminal domain	6
321327.CYA_1103	PF11805	Protein of unknown function (DUF3326)	6
321327.CYA_0345	PF12323	Helix-turn-helix domain	13
321327.CYA_0345	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0346	PF00239	Resolvase, N terminal domain	6
321327.CYA_2722	PF13518	Helix-turn-helix domain	8
321327.CYA_0767	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0013	PF09353	Domain of unknown function (DUF1995)	6
321327.CYA_1196	PF00101	Ribulose bisphosphate carboxylase, small chain	6
321327.CYA_1195	PF02341	RbcX protein	8
321327.CYA_2158	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2406	PF06799	Protein of unknown function (DUF1230)	6
321327.CYA_1326	PF00737	Photosystem II 10 kDa phosphoprotein	6
321327.CYA_0807	PF12323	Helix-turn-helix domain	13
321327.CYA_0807	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0808	PF00239	Resolvase, N terminal domain	6
321327.CYA_0573	PF11360	Protein of unknown function (DUF3110)	6
321327.CYA_0712	PF13301	Protein of unknown function (DUF4079)	6
321327.CYA_1374	PF00239	Resolvase, N terminal domain	6
321327.CYA_1375	PF12323	Helix-turn-helix domain	13
321327.CYA_1375	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0158	PF12323	Helix-turn-helix domain	13
321327.CYA_0158	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0397	PF00239	Resolvase, N terminal domain	6
321327.CYA_0395	PF12323	Helix-turn-helix domain	13
321327.CYA_0395	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2440	PF12323	Helix-turn-helix domain	13
321327.CYA_2440	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_1607	PF11910	Cyanobacterial and plant NDH-1 subunit O	6
321327.CYA_2892	PF11833	Protein of unknown function (DUF3353)	6
321327.CYA_2522	PF00223	Photosystem I psaA/psaB protein	5
321327.CYA_2097	PF06514	Photosystem II 12 kDa extrinsic protein (PsbU)	6
321327.CYA_1812	PF05491	Holliday junction DNA helicase ruvB C-terminus	6
321327.CYA_1811	PF00124	Photosynthetic reaction centre protein	8
321327.CYA_0569	PF12600	Protein of unknown function (DUF3769)	6
321327.CYA_1614	PF00101	Ribulose bisphosphate carboxylase, small chain	6
321327.CYA_0703	PF01765	Ribosome recycling factor	9
321327.CYA_0704	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0706	PF01169	Uncharacterized protein family UPF0016	6
321327.CYA_0707	PF03652	Holliday junction resolvase	4
321327.CYA_0494	PF11998	Protein of unknown function (DUF3493)	7
321327.CYA_0430	PF11623	Protein of unknown function (DUF3252)	6
321327.CYA_2521	PF00223	Photosystem I psaA/psaB protein	5
321327.CYA_0389	PF00504	Chlorophyll A-B binding protein	6
321327.CYA_0383	PF07082	Protein of unknown function (DUF1350)	5
321327.CYA_0036	PF00796	Photosystem I reaction centre subunit VIII	8
321327.CYA_0037	PF13518	Helix-turn-helix domain	8
321327.CYA_0034	PF01169	Uncharacterized protein family UPF0016	6
321327.CYA_0035	PF02605	Photosystem I reaction centre subunit XI	13
321327.CYA_2558	PF06596	Photosystem II reaction centre X protein (PsbX)	14
321327.CYA_1604	PF13518	Helix-turn-helix domain	8
321327.CYA_2393	PF12323	Helix-turn-helix domain	13
321327.CYA_2393	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2392	PF00239	Resolvase, N terminal domain	6
321327.CYA_1772	PF00239	Resolvase, N terminal domain	6
321327.CYA_1773	PF12323	Helix-turn-helix domain	13
321327.CYA_1773	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2176	PF11264	Thylakoid formation protein	6
321327.CYA_2776	PF03742	PetN	10
321327.CYA_0739	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_2606	PF00421	Photosystem II protein	5
321327.CYA_2604	PF02605	Photosystem I reaction centre subunit XI	13
321327.CYA_2604	PF00421	Photosystem II protein	5
321327.CYA_2601	PF02943	Ferredoxin thioredoxin reductase catalytic beta chain	9
321327.CYA_2600	PF06596	Photosystem II reaction centre X protein (PsbX)	14
321327.CYA_0047	PF03130	PBS lyase HEAT-like repeat	7
321327.CYA_1943	PF01789	PsbP	4
321327.CYA_0544	PF05969	Photosystem II complex subunit Ycf12	8
321327.CYA_2765	PF02532	Photosystem II reaction centre I protein (PSII 4.8 kDa protein)	9
321327.CYA_0726	PF12323	Helix-turn-helix domain	13
321327.CYA_0726	PF07282	Putative transposase DNA-binding domain	9
321327.CYA_0727	PF00239	Resolvase, N terminal domain	6
321327.CYA_1236	PF03652	Holliday junction resolvase	4
321327.CYA_1233	PF01716	Manganese-stabilising protein / photosystem II polypeptide	6
321327.CYA_1384	PF08855	Domain of unknown function (DUF1825)	6
321327.CYA_1380	PF01947	Protein of unknown function (DUF98)	5
321327.CYA_0053	PF13518	Helix-turn-helix domain	8
321327.CYA_0059	PF10999	Protein of unknown function (DUF2839)	4